Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 116.99678 * 2 1 4 4 C 1.38570 * 120.07484 * 359.97036 * 3 2 1 5 5 C 1.38239 * 120.00100 * 180.02562 * 4 3 2 6 6 C 1.38246 * 120.14776 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.14612 * 0.04756 * 6 5 4 8 8 C 1.50702 * 119.99984 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46845 * 264.97279 * 8 7 6 10 10 O 1.21300 * 120.00136 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99891 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00031 * 0.02562 * 11 9 8 13 13 C 1.37101 * 119.99638 * 179.97438 * 11 9 8 14 14 H 1.07999 * 120.00402 * 322.83136 * 13 11 9 15 15 C 1.38954 * 119.99545 * 142.83057 * 13 11 9 16 16 N 1.31413 * 119.99912 * 158.40362 * 15 13 11 17 17 Si 1.86796 * 119.99876 * 338.41048 * 15 13 11 18 18 H 1.48500 * 109.47449 * 95.72347 * 17 15 13 19 19 H 1.48499 * 109.47110 * 215.71733 * 17 15 13 20 20 H 1.48494 * 109.47262 * 335.71818 * 17 15 13 21 21 C 1.38560 * 119.99839 * 359.95009 * 7 6 5 22 22 O 1.35995 * 120.07283 * 180.29610 * 21 7 6 23 23 C 1.42897 * 117.00281 * 269.72626 * 22 21 7 24 24 H 1.09003 * 109.47220 * 60.00445 * 1 2 3 25 25 H 1.09006 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47205 * 300.00095 * 1 2 3 27 27 H 1.08006 * 119.99701 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.92869 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.93339 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47163 * 24.97131 * 8 7 6 31 31 H 1.09000 * 109.46708 * 144.97782 * 8 7 6 32 32 H 1.09003 * 109.47137 * 85.13233 * 12 11 9 33 33 H 1.08995 * 109.46897 * 205.13084 * 12 11 9 34 34 H 1.08994 * 109.47164 * 325.13217 * 12 11 9 35 35 H 0.96998 * 119.99894 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.47307 * 299.99877 * 23 22 21 37 37 H 1.09005 * 109.47146 * 60.00388 * 23 22 21 38 38 H 1.08997 * 109.47143 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3749 -0.0006 5 6 1.9222 3.6058 -0.0012 6 6 3.3027 3.6800 -0.0005 7 6 4.0602 2.5235 -0.0004 8 6 5.5648 2.6082 -0.0003 9 6 6.0734 2.5120 -1.4156 10 8 5.2909 2.3874 -2.3341 11 7 7.3976 2.5655 -1.6609 12 6 8.3425 2.7165 -0.5517 13 6 7.8602 2.4774 -2.9485 14 1 7.3741 1.8190 -3.6532 15 6 8.9546 3.2354 -3.3468 16 7 9.6600 2.8711 -4.3940 17 14 9.4233 4.7719 -2.3935 18 1 10.4813 4.4385 -1.4062 19 1 9.9314 5.8024 -3.3343 20 1 8.2299 5.2963 -1.6822 21 6 3.4359 1.2865 0.0002 22 8 4.1795 0.1479 0.0065 23 6 4.5347 -0.4020 -1.2637 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2145 2.3196 -0.0007 28 1 1.3340 4.5115 -0.0012 29 1 3.7906 4.6435 -0.0005 30 1 5.8752 3.5588 0.4335 31 1 5.9748 1.7884 0.5896 32 1 8.5682 1.7368 -0.1306 33 1 9.2613 3.1753 -0.9170 34 1 7.9013 3.3499 0.2178 35 1 10.4242 3.4000 -4.6718 36 1 3.6297 -0.6465 -1.8198 37 1 5.1200 0.3269 -1.8244 38 1 5.1259 -1.3057 -1.1159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259587568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = -85.554338 kcal Electronic energy + Delta-G solvation = -22414.872386 eV Core-core repulsion = 19030.399557 eV Total energy + Delta-G solvation = -3384.472829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67713 -40.41821 -39.04101 -37.90775 -36.66802 -34.20065 -33.26249 -31.03134 -29.26501 -28.27124 -28.05065 -27.48178 -26.18124 -23.27727 -22.65022 -20.62653 -19.04481 -18.98379 -18.16849 -17.94832 -17.77807 -17.27331 -16.84555 -16.20189 -16.08065 -15.84031 -15.50787 -15.34560 -14.78326 -14.52082 -14.39212 -14.16503 -14.10976 -13.49722 -13.32999 -13.14181 -12.78790 -12.71295 -12.65487 -12.47797 -12.22763 -11.95756 -11.92524 -11.79467 -11.04963 -10.90210 -10.43939 -9.67766 -9.62293 -9.09818 -8.50310 -6.12846 0.17838 0.39863 1.21697 1.34254 1.46964 1.96142 2.19422 2.31173 2.42241 2.76388 2.96490 3.15064 3.70338 3.95027 4.05386 4.12984 4.24538 4.32238 4.36073 4.37376 4.39551 4.42308 4.48584 4.54698 4.58303 4.70378 4.71051 4.80099 4.83592 4.89764 5.23764 5.39131 5.53261 5.54403 5.72159 6.04270 6.18213 6.56913 6.66160 6.95264 7.30566 7.88587 8.67060 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.004981 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.403977 B = 5619.450817 C = 6006.495260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.095 3.905 4 C -0.201 4.201 5 C -0.079 4.079 6 C -0.145 4.145 7 C -0.053 4.053 8 C -0.091 4.091 9 C 0.467 3.533 10 O -0.602 6.602 11 N -0.485 5.485 12 C 0.055 3.945 13 C -0.333 4.333 14 H 0.042 0.958 15 C 0.009 3.991 16 N -0.913 5.913 17 Si 0.955 3.045 18 H -0.240 1.240 19 H -0.292 1.292 20 H -0.255 1.255 21 C 0.042 3.958 22 O -0.337 6.337 23 C 0.035 3.965 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.280 0.720 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 1.197 14.927 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.049 3.951 4 C -0.219 4.219 5 C -0.097 4.097 6 C -0.163 4.163 7 C -0.054 4.054 8 C -0.131 4.131 9 C 0.257 3.743 10 O -0.486 6.486 11 N -0.207 5.207 12 C -0.087 4.087 13 C -0.461 4.461 14 H 0.060 0.940 15 C -0.192 4.192 16 N -0.551 5.551 17 Si 0.778 3.222 18 H -0.165 1.165 19 H -0.219 1.219 20 H -0.178 1.178 21 C -0.002 4.002 22 O -0.254 6.254 23 C -0.059 4.059 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.091 0.909 27 H 0.180 0.820 28 H 0.181 0.819 29 H 0.160 0.840 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.337 0.837 14.494 20.404 hybrid contribution 0.374 0.350 -0.809 0.957 sum -13.963 1.187 13.685 19.587 Atomic orbital electron populations 1.23384 0.76392 1.05547 1.02432 1.86123 1.23542 1.26387 1.88686 1.19545 0.91239 0.86035 0.98309 1.21465 1.01270 0.91137 1.08027 1.21316 0.93956 0.98260 0.96177 1.21165 0.94688 0.97555 1.02889 1.19684 0.95177 0.92443 0.98090 1.20627 0.92001 1.06266 0.94168 1.20925 0.82077 0.80057 0.91242 1.90529 1.55999 1.53831 1.48260 1.43806 1.04832 1.66000 1.06066 1.22268 0.93636 1.03061 0.89738 1.18628 1.14053 1.25056 0.88353 0.93978 1.26199 0.95278 1.00366 0.97406 1.69879 1.17388 1.39118 1.28735 0.85745 0.79675 0.78188 0.78568 1.16493 1.21928 1.17826 1.18098 0.87386 0.86561 1.08199 1.85932 1.70797 1.39066 1.29556 1.23073 0.99485 0.98860 0.84528 0.91900 0.86512 0.90930 0.82046 0.81882 0.83952 0.85533 0.87230 0.90927 0.92474 0.88386 0.91091 0.94424 0.94353 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -9.74 10.28 -79.65 -0.82 -10.56 16 3 C 0.09 2.98 6.70 22.57 0.15 3.13 16 4 C -0.20 -4.91 9.04 22.35 0.20 -4.70 16 5 C -0.08 -1.87 10.04 22.27 0.22 -1.65 16 6 C -0.14 -4.16 9.67 22.27 0.22 -3.95 16 7 C -0.05 -1.84 4.38 -19.78 -0.09 -1.92 16 8 C -0.09 -3.13 4.17 29.10 0.12 -3.01 16 9 C 0.47 21.72 6.48 87.66 0.57 22.29 16 10 O -0.60 -33.25 14.14 -3.09 -0.04 -33.30 16 11 N -0.48 -23.47 2.58 -658.89 -1.70 -25.17 16 12 C 0.05 2.01 8.78 127.77 1.12 3.13 16 13 C -0.33 -19.69 9.37 84.04 0.79 -18.90 16 14 H 0.04 2.93 7.90 -2.91 -0.02 2.91 16 15 C 0.01 0.52 5.29 84.93 0.45 0.97 16 16 N -0.91 -54.75 13.96 21.66 0.30 -54.45 16 17 Si 0.96 41.52 24.96 68.60 1.71 43.24 16 18 H -0.24 -9.06 6.69 99.48 0.67 -8.40 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 21 C 0.04 1.53 5.71 22.57 0.13 1.66 16 22 O -0.34 -12.97 9.33 -79.63 -0.74 -13.71 16 23 C 0.03 1.34 11.13 113.37 1.26 2.60 16 24 H 0.06 0.94 7.66 -2.39 -0.02 0.93 16 25 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 27 H 0.16 2.71 6.30 -2.91 -0.02 2.69 16 28 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.13 3.42 7.32 -2.39 -0.02 3.40 16 31 H 0.11 3.49 7.65 -2.39 -0.02 3.47 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.18 3.43 -2.39 -0.01 2.17 16 34 H 0.10 2.71 6.64 -2.39 -0.02 2.69 16 35 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.76 4.75 -2.38 -0.01 1.74 16 38 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -79.16 313.06 6.00 -73.16 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.04 Total: 19.75 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.26 Total: 1.04 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -1.40 Total: -79.62 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.61 Total: -57.56 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.71 Total: 43.24 kcal Total: -79.16 6.00 -73.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259587568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.392 kcal (2) G-P(sol) polarization free energy of solvation -79.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds