Wall clock time and date at job start Wed Apr 15 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35983 * 116.99849 * 2 1 4 4 C 1.38700 * 120.00501 * 0.28012 * 3 2 1 5 5 C 1.38121 * 120.00167 * 180.23366 * 4 3 2 6 6 C 1.38704 * 120.00307 * 359.48523 * 5 4 3 7 7 O 1.35981 * 120.00350 * 180.27737 * 6 5 4 8 8 C 1.42896 * 117.00085 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47058 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46769 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00577 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99621 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00261 * 0.02562 * 12 10 9 14 14 C 1.37103 * 119.99851 * 179.97438 * 12 10 9 15 15 H 1.08003 * 119.99902 * 22.41376 * 14 12 10 16 16 C 1.38948 * 120.00085 * 202.41098 * 14 12 10 17 17 N 1.31416 * 119.99865 * 11.58861 * 16 14 12 18 18 Si 1.86798 * 120.00089 * 191.59537 * 16 14 12 19 19 H 1.48494 * 109.47347 * 89.99946 * 18 16 14 20 20 H 1.48505 * 109.46936 * 209.99972 * 18 16 14 21 21 H 1.48501 * 109.47020 * 329.99472 * 18 16 14 22 22 C 1.38705 * 119.99656 * 0.25680 * 6 5 4 23 23 C 1.38137 * 119.99756 * 0.02562 * 22 6 5 24 24 H 1.09006 * 109.47231 * 299.99959 * 1 2 3 25 25 H 1.09005 * 109.47397 * 59.99915 * 1 2 3 26 26 H 1.09001 * 109.47523 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99335 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.00088 * 179.76381 * 5 4 3 29 29 H 1.09000 * 109.47052 * 300.00413 * 8 7 6 30 30 H 1.09002 * 109.47063 * 60.00139 * 8 7 6 31 31 H 1.09000 * 109.47269 * 299.99965 * 9 8 7 32 32 H 1.08995 * 109.47506 * 60.00644 * 9 8 7 33 33 H 1.09004 * 109.46674 * 92.15918 * 13 12 10 34 34 H 1.09001 * 109.47548 * 212.15017 * 13 12 10 35 35 H 1.08997 * 109.47127 * 332.15749 * 13 12 10 36 36 H 0.96998 * 119.99890 * 180.02562 * 17 16 14 37 37 H 1.07994 * 119.99987 * 180.02562 * 22 6 5 38 38 H 1.07993 * 119.99262 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3749 0.0059 5 6 1.9180 3.6056 0.0010 6 6 3.3031 3.6782 0.0010 7 8 3.9205 4.8898 0.0019 8 6 5.3495 4.8898 0.0024 9 6 5.8594 6.3323 0.0041 10 6 7.3665 6.3322 0.0040 11 8 7.9730 5.2818 0.0032 12 7 8.0404 7.4994 0.0048 13 6 7.3079 8.7682 0.0063 14 6 9.4114 7.4994 0.0053 15 1 9.9515 6.6349 -0.3516 16 6 10.1060 8.6116 0.4648 17 7 9.4688 9.5656 1.1058 18 14 11.9455 8.7510 0.1712 19 1 12.1897 9.4414 -1.1206 20 1 12.5651 9.5296 1.2735 21 1 12.5441 7.3926 0.1274 22 6 4.0586 2.5149 0.0005 23 6 3.4314 1.2842 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2124 2.3183 0.0100 28 1 1.3298 4.5113 0.0017 29 1 5.7125 4.3754 0.8922 30 1 5.7131 4.3765 -0.8877 31 1 5.4964 6.8470 -0.8855 32 1 5.4959 6.8452 0.8944 33 1 7.1603 9.1012 1.0337 34 1 7.8795 9.5184 -0.5401 35 1 6.3391 8.6290 -0.4734 36 1 9.9536 10.3422 1.4263 37 1 5.1370 2.5714 0.0010 38 1 4.0196 0.3785 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260127917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:42 Heat of formation + Delta-G solvation = -76.659755 kcal Electronic energy + Delta-G solvation = -20765.553244 eV Core-core repulsion = 17381.466113 eV Total energy + Delta-G solvation = -3384.087131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41566 -39.12531 -38.35916 -36.34185 -34.75689 -31.96116 -31.44473 -30.87233 -29.13619 -27.30805 -26.34704 -24.98902 -23.55225 -22.56530 -21.38987 -18.87472 -18.38804 -17.71047 -16.88606 -16.42816 -16.07034 -15.84645 -15.76830 -14.86796 -14.62782 -14.39160 -14.20209 -13.99724 -13.60238 -13.08792 -12.92535 -12.73854 -12.33986 -12.22491 -12.09897 -11.62305 -11.44728 -11.32177 -11.16448 -10.96827 -10.88552 -10.59728 -10.36980 -10.27519 -10.15987 -9.15245 -9.05752 -8.49014 -7.74576 -7.72631 -6.34194 -3.91440 1.19005 1.44088 3.12339 3.14664 3.23287 3.27229 3.34908 3.69198 3.83523 4.13879 4.67121 4.73291 4.86405 4.90506 4.95209 5.07721 5.09367 5.20454 5.23673 5.37894 5.39947 5.57510 5.69500 5.78018 5.89397 5.99747 6.17201 6.20438 6.23101 6.34062 6.40456 6.55355 6.86383 7.21067 7.21383 7.53921 7.57025 8.08436 8.43774 9.14003 9.38083 9.91998 10.69276 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.053489 B = 0.002741 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.349121 B =10211.527922 C =10654.014849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.080 3.920 4 C -0.169 4.169 5 C -0.119 4.119 6 C 0.106 3.894 7 O -0.319 6.319 8 C 0.079 3.921 9 C -0.127 4.127 10 C 0.448 3.552 11 O -0.594 6.594 12 N -0.443 5.443 13 C 0.110 3.890 14 C -0.307 4.307 15 H 0.100 0.900 16 C 0.030 3.970 17 N -0.882 5.882 18 Si 0.928 3.072 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.168 4.168 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.268 0.732 37 H 0.141 0.859 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 -10.171 -2.068 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.035 3.965 4 C -0.188 4.188 5 C -0.137 4.137 6 C 0.061 3.939 7 O -0.234 6.234 8 C 0.004 3.996 9 C -0.168 4.168 10 C 0.236 3.764 11 O -0.480 6.480 12 N -0.161 5.161 13 C -0.034 4.034 14 C -0.435 4.435 15 H 0.117 0.883 16 C -0.174 4.174 17 N -0.522 5.522 18 Si 0.755 3.245 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.193 1.193 22 C -0.187 4.187 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.695 -10.449 -1.978 19.795 hybrid contribution 0.738 0.427 -0.011 0.853 sum -15.957 -10.022 -1.989 18.948 Atomic orbital electron populations 1.23003 0.78827 1.03654 1.01191 1.86062 1.20984 1.26891 1.89555 1.18876 0.92261 0.84128 1.01186 1.20987 0.99796 0.91462 1.06572 1.20203 0.91522 0.97919 1.04081 1.18932 0.92114 0.84672 0.98210 1.86003 1.22472 1.26335 1.88548 1.22508 0.76046 0.98376 1.02631 1.21385 0.95514 0.95657 1.04224 1.19700 0.87728 0.84664 0.84337 1.90520 1.70055 1.31034 1.56433 1.43574 1.06347 1.04017 1.62165 1.21555 0.92991 0.86940 1.01900 1.19684 0.80267 1.03027 1.40493 0.88260 1.25369 1.00495 0.96195 0.95292 1.70003 1.36734 1.09973 1.35456 0.85887 0.82115 0.78619 0.77863 1.20342 1.20912 1.19334 1.21281 1.00954 0.91340 1.05076 1.20229 0.91284 0.98114 1.03153 0.92820 0.92833 0.88496 0.85086 0.84942 0.91263 0.91331 0.89488 0.89269 0.92228 0.91196 0.95269 0.92194 0.84112 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.55 10.50 -19.69 -0.21 -3.75 16 3 C 0.08 0.97 6.69 -39.24 -0.26 0.70 16 4 C -0.17 -1.86 9.03 -39.45 -0.36 -2.21 16 5 C -0.12 -1.46 9.98 -39.45 -0.39 -1.85 16 6 C 0.11 1.54 6.69 -39.24 -0.26 1.27 16 7 O -0.32 -5.07 10.14 -19.68 -0.20 -5.27 16 8 C 0.08 1.35 4.03 37.16 0.15 1.50 16 9 C -0.13 -2.34 4.59 -27.88 -0.13 -2.46 16 10 C 0.45 10.76 7.63 -10.98 -0.08 10.68 16 11 O -0.59 -16.11 15.67 5.55 0.09 -16.02 16 12 N -0.44 -11.32 3.02 -122.19 -0.37 -11.68 16 13 C 0.11 2.43 8.52 59.85 0.51 2.94 16 14 C -0.31 -8.53 9.29 -14.93 -0.14 -8.67 16 15 H 0.10 2.88 7.41 -52.48 -0.39 2.50 16 16 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 17 N -0.88 -23.41 10.61 55.50 0.59 -22.82 16 18 Si 0.93 20.69 29.57 -169.99 -5.03 15.66 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C -0.17 -2.31 9.03 -39.45 -0.36 -2.67 16 23 C -0.11 -1.38 9.98 -39.45 -0.39 -1.78 16 24 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 25 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.13 1.06 6.29 -52.48 -0.33 0.73 16 28 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.07 1.21 7.62 -51.93 -0.40 0.81 16 30 H 0.07 1.17 7.62 -51.93 -0.40 0.78 16 31 H 0.09 1.44 7.41 -51.93 -0.38 1.06 16 32 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 33 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16 34 H 0.07 1.62 7.06 -51.93 -0.37 1.26 16 35 H 0.03 0.53 6.36 -51.93 -0.33 0.20 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.14 1.93 6.29 -52.49 -0.33 1.60 16 38 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 320.79 15.07 4.83 4.83 Total: -1.00 -31.49 320.79 -6.04 -37.53 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.93 Total: 2.20 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.81 Total: -0.68 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.22 Total: -34.50 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.32 Total: -25.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.49 -6.04 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.133 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds