Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35983 * 116.99849 * 2 1 4 4 C 1.38700 * 120.00501 * 0.28012 * 3 2 1 5 5 C 1.38121 * 120.00167 * 180.23366 * 4 3 2 6 6 C 1.38704 * 120.00307 * 359.48523 * 5 4 3 7 7 O 1.35981 * 120.00350 * 180.27737 * 6 5 4 8 8 C 1.42896 * 117.00085 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47058 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46769 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00577 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99621 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00261 * 0.02562 * 12 10 9 14 14 C 1.37103 * 119.99851 * 179.97438 * 12 10 9 15 15 H 1.08003 * 119.99902 * 22.41376 * 14 12 10 16 16 C 1.38948 * 120.00085 * 202.41098 * 14 12 10 17 17 N 1.31416 * 119.99865 * 11.58861 * 16 14 12 18 18 Si 1.86798 * 120.00089 * 191.59537 * 16 14 12 19 19 H 1.48494 * 109.47347 * 89.99946 * 18 16 14 20 20 H 1.48505 * 109.46936 * 209.99972 * 18 16 14 21 21 H 1.48501 * 109.47020 * 329.99472 * 18 16 14 22 22 C 1.38705 * 119.99656 * 0.25680 * 6 5 4 23 23 C 1.38137 * 119.99756 * 0.02562 * 22 6 5 24 24 H 1.09006 * 109.47231 * 299.99959 * 1 2 3 25 25 H 1.09005 * 109.47397 * 59.99915 * 1 2 3 26 26 H 1.09001 * 109.47523 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99335 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.00088 * 179.76381 * 5 4 3 29 29 H 1.09000 * 109.47052 * 300.00413 * 8 7 6 30 30 H 1.09002 * 109.47063 * 60.00139 * 8 7 6 31 31 H 1.09000 * 109.47269 * 299.99965 * 9 8 7 32 32 H 1.08995 * 109.47506 * 60.00644 * 9 8 7 33 33 H 1.09004 * 109.46674 * 92.15918 * 13 12 10 34 34 H 1.09001 * 109.47548 * 212.15017 * 13 12 10 35 35 H 1.08997 * 109.47127 * 332.15749 * 13 12 10 36 36 H 0.96998 * 119.99890 * 180.02562 * 17 16 14 37 37 H 1.07994 * 119.99987 * 180.02562 * 22 6 5 38 38 H 1.07993 * 119.99262 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3749 0.0059 5 6 1.9180 3.6056 0.0010 6 6 3.3031 3.6782 0.0010 7 8 3.9205 4.8898 0.0019 8 6 5.3495 4.8898 0.0024 9 6 5.8594 6.3323 0.0041 10 6 7.3665 6.3322 0.0040 11 8 7.9730 5.2818 0.0032 12 7 8.0404 7.4994 0.0048 13 6 7.3079 8.7682 0.0063 14 6 9.4114 7.4994 0.0053 15 1 9.9515 6.6349 -0.3516 16 6 10.1060 8.6116 0.4648 17 7 9.4688 9.5656 1.1058 18 14 11.9455 8.7510 0.1712 19 1 12.1897 9.4414 -1.1206 20 1 12.5651 9.5296 1.2735 21 1 12.5441 7.3926 0.1274 22 6 4.0586 2.5149 0.0005 23 6 3.4314 1.2842 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2124 2.3183 0.0100 28 1 1.3298 4.5113 0.0017 29 1 5.7125 4.3754 0.8922 30 1 5.7131 4.3765 -0.8877 31 1 5.4964 6.8470 -0.8855 32 1 5.4959 6.8452 0.8944 33 1 7.1603 9.1012 1.0337 34 1 7.8795 9.5184 -0.5401 35 1 6.3391 8.6290 -0.4734 36 1 9.9536 10.3422 1.4263 37 1 5.1370 2.5714 0.0010 38 1 4.0196 0.3785 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260127917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = -96.378438 kcal Electronic energy + Delta-G solvation = -20766.408311 eV Core-core repulsion = 17381.466113 eV Total energy + Delta-G solvation = -3384.942197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40584 -40.52937 -39.80931 -37.36057 -36.70805 -33.82009 -32.83042 -32.04876 -30.08162 -28.36359 -27.89871 -26.70073 -25.02126 -23.61884 -22.46022 -20.58201 -19.46795 -18.93450 -18.70627 -17.68474 -17.37093 -17.29214 -16.58422 -16.44392 -15.99609 -15.85904 -15.66591 -15.42023 -14.53991 -14.35455 -14.25295 -13.93564 -13.70089 -13.55542 -13.31660 -13.11797 -12.98183 -12.92555 -12.66175 -12.48037 -12.22570 -12.13760 -12.05287 -11.61073 -11.29790 -11.03098 -10.45082 -10.09973 -9.72918 -8.73194 -8.34621 -6.00853 0.24366 0.45303 1.36873 1.40936 1.53040 1.95891 2.01410 2.31591 2.43988 2.72285 3.07605 3.19904 3.74443 3.85213 3.89661 3.97898 4.06961 4.14390 4.32863 4.39800 4.45299 4.45528 4.61628 4.68079 4.74882 4.78860 4.81110 4.96100 5.02182 5.05701 5.28630 5.35865 5.39625 5.43617 5.58787 6.06401 6.29845 6.44283 6.52621 7.13037 7.43185 7.97125 8.66908 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.053489 B = 0.002741 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.349121 B =10211.527922 C =10654.014849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.080 3.920 4 C -0.162 4.162 5 C -0.116 4.116 6 C 0.076 3.924 7 O -0.322 6.322 8 C 0.092 3.908 9 C -0.114 4.114 10 C 0.439 3.561 11 O -0.634 6.634 12 N -0.460 5.460 13 C 0.119 3.881 14 C -0.345 4.345 15 H 0.073 0.927 16 C -0.003 4.003 17 N -0.896 5.896 18 Si 0.991 3.009 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.178 4.178 23 C -0.124 4.124 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.165 0.835 28 H 0.152 0.848 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.274 0.726 37 H 0.131 0.869 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 -9.984 -2.253 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.036 3.964 4 C -0.181 4.181 5 C -0.134 4.134 6 C 0.031 3.969 7 O -0.237 6.237 8 C 0.016 3.984 9 C -0.154 4.154 10 C 0.229 3.771 11 O -0.523 6.523 12 N -0.179 5.179 13 C -0.024 4.024 14 C -0.473 4.473 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.534 5.534 18 Si 0.815 3.185 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.197 4.197 23 C -0.142 4.142 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.135 0.865 27 H 0.182 0.818 28 H 0.169 0.831 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.773 -10.247 -2.162 21.497 hybrid contribution 1.232 0.249 0.065 1.259 sum -17.541 -9.999 -2.097 20.299 Atomic orbital electron populations 1.23353 0.76477 1.05560 1.02356 1.86054 1.23444 1.26368 1.89248 1.19026 0.92188 0.85098 1.00131 1.21325 1.01402 0.90371 1.04986 1.20495 0.90635 0.99305 1.02987 1.19229 0.93117 0.84144 1.00405 1.85948 1.21185 1.27306 1.89216 1.22198 0.77167 0.97239 1.01803 1.21241 0.91018 0.97028 1.06089 1.20627 0.90101 0.83677 0.82676 1.90486 1.71634 1.32397 1.57760 1.43850 1.06077 1.05534 1.62410 1.21519 0.94278 0.85205 1.01432 1.19639 0.81870 1.03146 1.42666 0.90918 1.26120 1.04581 0.95387 0.94446 1.70073 1.38227 1.10101 1.35010 0.84961 0.76879 0.78219 0.78449 1.18985 1.19798 1.20110 1.21264 1.00637 0.91970 1.05853 1.20377 0.92252 0.97973 1.03636 0.91600 0.91574 0.86462 0.81754 0.83058 0.92475 0.92071 0.86974 0.87645 0.93320 0.92761 0.90970 0.91622 0.85124 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.75 10.50 -93.36 -0.98 -7.73 16 3 C 0.08 1.81 6.69 22.49 0.15 1.96 16 4 C -0.16 -3.12 9.03 22.35 0.20 -2.92 16 5 C -0.12 -2.61 9.98 22.35 0.22 -2.39 16 6 C 0.08 2.15 6.69 22.49 0.15 2.30 16 7 O -0.32 -9.98 10.14 -93.34 -0.95 -10.92 16 8 C 0.09 3.12 4.03 71.98 0.29 3.41 16 9 C -0.11 -4.07 4.59 29.85 0.14 -3.93 16 10 C 0.44 21.42 7.63 87.66 0.67 22.09 16 11 O -0.63 -35.63 15.67 -3.06 -0.05 -35.68 16 12 N -0.46 -23.84 3.02 -658.88 -1.99 -25.83 16 13 C 0.12 5.17 8.52 127.77 1.09 6.26 16 14 C -0.35 -19.71 9.29 84.04 0.78 -18.93 16 15 H 0.07 4.43 7.41 -2.91 -0.02 4.41 16 16 C 0.00 -0.18 5.11 84.93 0.43 0.25 16 17 N -0.90 -47.35 10.61 21.66 0.23 -47.12 16 18 Si 0.99 42.51 29.57 68.60 2.03 44.54 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.18 -5.00 9.03 22.36 0.20 -4.80 16 23 C -0.12 -3.11 9.98 22.36 0.22 -2.89 16 24 H 0.07 0.54 7.65 -2.38 -0.02 0.52 16 25 H 0.07 0.54 7.67 -2.38 -0.02 0.52 16 26 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.17 1.98 6.29 -2.91 -0.02 1.96 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.06 2.06 7.62 -2.39 -0.02 2.04 16 30 H 0.06 2.15 7.62 -2.39 -0.02 2.13 16 31 H 0.11 3.46 7.41 -2.39 -0.02 3.44 16 32 H 0.11 3.46 8.11 -2.39 -0.02 3.44 16 33 H 0.05 2.21 7.54 -2.38 -0.02 2.19 16 34 H 0.05 2.50 7.06 -2.39 -0.02 2.49 16 35 H 0.07 2.47 6.36 -2.39 -0.02 2.45 16 36 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 37 H 0.13 3.81 6.29 -2.91 -0.02 3.79 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -69.23 320.79 5.02 -64.21 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.07 Total: 16.82 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.66 Total: 1.70 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.76 Total: -72.95 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -1.97 Total: -54.32 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -69.23 5.02 -64.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.168 kcal (2) G-P(sol) polarization free energy of solvation -69.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds