Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35991 * 116.99611 * 2 1 4 4 C 1.38570 * 120.07609 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99853 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14748 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.14888 * 359.97438 * 6 5 4 8 8 C 1.38569 * 119.99490 * 359.72588 * 7 6 5 9 9 O 1.35996 * 120.06909 * 180.26778 * 8 7 6 10 10 C 1.42897 * 117.00298 * 0.28399 * 9 8 7 11 11 C 1.52995 * 109.47299 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47262 * 179.97438 * 11 10 9 13 13 O 1.21298 * 120.00095 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00248 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99926 * 359.97438 * 14 12 11 16 16 C 1.37093 * 120.00365 * 180.02562 * 14 12 11 17 17 H 1.07996 * 119.99940 * 24.38719 * 16 14 12 18 18 C 1.38952 * 120.00057 * 204.39373 * 16 14 12 19 19 N 1.31411 * 120.00200 * 12.63649 * 18 16 14 20 20 Si 1.86797 * 119.99989 * 192.63516 * 18 16 14 21 21 H 1.48498 * 109.47127 * 90.00142 * 20 18 16 22 22 H 1.48499 * 109.47154 * 209.99972 * 20 18 16 23 23 H 1.48498 * 109.47126 * 329.99846 * 20 18 16 24 24 H 1.08997 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47245 * 299.99872 * 1 2 3 26 26 H 1.08996 * 109.47572 * 60.00174 * 1 2 3 27 27 H 1.07999 * 120.00008 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.92263 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.92556 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00321 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46917 * 299.99332 * 10 9 8 32 32 H 1.09004 * 109.47342 * 59.99281 * 10 9 8 33 33 H 1.08994 * 109.47552 * 299.99602 * 11 10 9 34 34 H 1.09001 * 109.47360 * 60.00067 * 11 10 9 35 35 H 1.08997 * 109.46929 * 85.86048 * 15 14 12 36 36 H 1.09002 * 109.47121 * 205.86734 * 15 14 12 37 37 H 1.09003 * 109.47069 * 325.86664 * 15 14 12 38 38 H 0.96995 * 120.00517 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3028 3.6799 -0.0016 7 6 4.0602 2.5234 -0.0011 8 6 3.4359 1.2864 0.0057 9 8 4.1795 0.1478 0.0118 10 6 5.6003 0.3008 0.0170 11 6 6.2618 -1.0787 0.0240 12 6 7.7601 -0.9173 0.0289 13 8 8.2507 0.1920 0.0274 14 7 8.5552 -2.0056 0.0349 15 6 7.9627 -3.3455 0.0372 16 6 9.9182 -1.8588 0.0398 17 1 10.3623 -0.9531 0.4254 18 6 10.7282 -2.8754 -0.4513 19 7 10.2001 -3.8608 -1.1419 20 14 12.5681 -2.8412 -0.1300 21 1 12.8626 -3.5571 1.1373 22 1 13.2788 -3.5067 -1.2512 23 1 13.0254 -1.4326 -0.0206 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2145 2.3197 -0.0014 28 1 1.3340 4.5116 -0.0019 29 1 3.7906 4.6434 -0.0024 30 1 5.1385 2.5841 -0.0019 31 1 5.9100 0.8481 -0.8733 32 1 5.9030 0.8531 0.9067 33 1 5.9521 -1.6257 0.9144 34 1 5.9592 -1.6313 -0.8655 35 1 7.7513 -3.6510 -0.9875 36 1 8.6601 -4.0503 0.4900 37 1 7.0360 -3.3320 0.6109 38 1 10.7654 -4.5706 -1.4844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -75.317685 kcal Electronic energy + Delta-G solvation = -21123.134456 eV Core-core repulsion = 17739.105521 eV Total energy + Delta-G solvation = -3384.028935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48936 -38.78956 -38.11704 -36.79999 -34.73533 -31.95072 -31.24583 -30.34209 -29.50473 -27.29218 -26.35543 -25.03895 -23.49743 -22.28833 -21.49480 -18.95649 -18.41095 -17.32681 -16.84792 -16.40602 -16.18979 -15.73932 -15.52953 -14.87204 -14.69917 -14.41155 -14.26884 -14.12453 -13.88967 -12.89281 -12.87916 -12.38368 -12.21689 -12.05637 -11.73504 -11.51064 -11.31501 -11.27284 -11.19009 -11.17858 -10.92591 -10.72115 -10.42792 -10.35466 -10.21397 -9.02046 -8.78142 -8.46207 -7.79854 -7.68294 -6.33577 -3.90459 1.24932 1.41901 3.16002 3.21055 3.23272 3.26665 3.33331 3.70781 3.86452 4.15425 4.70724 4.81011 4.94895 4.97790 5.00221 5.08448 5.10927 5.29235 5.32887 5.39121 5.41547 5.43410 5.64886 5.74726 5.98363 6.12510 6.19028 6.24186 6.29433 6.42971 6.46343 6.65816 6.85706 7.11911 7.20080 7.55704 7.66982 8.12050 8.46168 9.15924 9.39900 9.94760 10.71323 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.035082 B = 0.003238 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.934343 B = 8644.607297 C = 9355.355660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.092 3.908 4 C -0.176 4.176 5 C -0.127 4.127 6 C -0.115 4.115 7 C -0.174 4.174 8 C 0.113 3.887 9 O -0.308 6.308 10 C 0.079 3.921 11 C -0.127 4.127 12 C 0.450 3.550 13 O -0.594 6.594 14 N -0.442 5.442 15 C 0.109 3.891 16 C -0.308 4.308 17 H 0.099 0.901 18 C 0.031 3.969 19 N -0.881 5.881 20 Si 0.927 3.073 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.269 1.269 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.131 0.869 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.141 0.859 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 7.366 2.165 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.046 3.954 4 C -0.195 4.195 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.192 4.192 8 C 0.067 3.933 9 O -0.222 6.222 10 C 0.004 3.996 11 C -0.167 4.167 12 C 0.238 3.762 13 O -0.480 6.480 14 N -0.161 5.161 15 C -0.035 4.035 16 C -0.436 4.436 17 H 0.116 0.884 18 C -0.173 4.173 19 N -0.520 5.520 20 Si 0.754 3.246 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.193 1.193 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.680 7.287 2.067 19.234 hybrid contribution 0.745 0.016 0.004 0.745 sum -16.935 7.303 2.071 18.558 Atomic orbital electron populations 1.23031 0.78977 1.03837 1.00926 1.86208 1.20646 1.25942 1.89085 1.18294 0.89232 0.85194 1.02666 1.21009 0.99665 0.91631 1.07169 1.20798 0.94573 0.96823 1.02306 1.20882 0.93666 0.97933 1.00871 1.21289 1.01205 0.91086 1.05652 1.18308 0.88208 0.86508 1.00316 1.86098 1.19639 1.28177 1.88297 1.22522 0.75984 0.98589 1.02528 1.21377 0.94619 0.96439 1.04312 1.19737 0.87109 0.85332 0.84042 1.90517 1.76270 1.24878 1.56314 1.43540 1.06003 1.04232 1.62292 1.21523 0.95621 0.85502 1.00809 1.19667 0.79988 1.04660 1.39318 0.88357 1.25366 1.00539 0.96272 0.95077 1.69994 1.36427 1.12327 1.33234 0.85908 0.82110 0.78731 0.77854 1.20340 1.20930 1.19330 0.88320 0.92935 0.92915 0.85100 0.85875 0.85647 0.84149 0.91297 0.91380 0.89467 0.89232 0.92851 0.90653 0.95322 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.21 10.28 -34.22 -0.35 -4.56 16 3 C 0.09 1.29 6.70 -39.12 -0.26 1.02 16 4 C -0.18 -1.95 9.04 -39.46 -0.36 -2.31 16 5 C -0.13 -1.32 10.04 -39.57 -0.40 -1.72 16 6 C -0.12 -1.33 10.04 -39.57 -0.40 -1.73 16 7 C -0.17 -2.42 9.04 -39.46 -0.36 -2.77 16 8 C 0.11 1.77 6.70 -39.12 -0.26 1.51 16 9 O -0.31 -5.38 9.92 -34.23 -0.34 -5.72 16 10 C 0.08 1.40 4.03 37.15 0.15 1.55 16 11 C -0.13 -2.43 4.68 -27.88 -0.13 -2.56 16 12 C 0.45 11.01 7.63 -10.98 -0.08 10.93 16 13 O -0.59 -16.28 15.70 5.54 0.09 -16.19 16 14 N -0.44 -11.45 3.01 -122.19 -0.37 -11.82 16 15 C 0.11 2.46 8.44 59.85 0.51 2.96 16 16 C -0.31 -8.66 9.24 -14.93 -0.14 -8.80 16 17 H 0.10 2.87 7.45 -52.49 -0.39 2.48 16 18 C 0.03 0.82 5.04 -17.47 -0.09 0.73 16 19 N -0.88 -23.61 10.84 55.50 0.60 -23.01 16 20 Si 0.93 20.79 29.57 -169.99 -5.03 15.76 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.13 1.08 6.30 -52.49 -0.33 0.74 16 28 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.94 6.30 -52.49 -0.33 1.61 16 31 H 0.07 1.24 7.61 -51.93 -0.40 0.85 16 32 H 0.07 1.20 7.63 -51.93 -0.40 0.81 16 33 H 0.09 1.52 7.41 -51.93 -0.38 1.14 16 34 H 0.09 1.63 8.11 -51.93 -0.42 1.21 16 35 H 0.05 1.23 7.83 -51.93 -0.41 0.82 16 36 H 0.07 1.78 6.80 -51.93 -0.35 1.43 16 37 H 0.03 0.53 6.61 -51.93 -0.34 0.19 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -32.37 321.00 -6.34 -38.71 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.95 Total: 1.95 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.83 Total: 0.04 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.23 Total: -34.83 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.60 Total: -26.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.37 -6.34 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.612 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds