Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35991 * 116.99611 * 2 1 4 4 C 1.38570 * 120.07609 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99853 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14748 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.14888 * 359.97438 * 6 5 4 8 8 C 1.38569 * 119.99490 * 359.72588 * 7 6 5 9 9 O 1.35996 * 120.06909 * 180.26778 * 8 7 6 10 10 C 1.42897 * 117.00298 * 0.28399 * 9 8 7 11 11 C 1.52995 * 109.47299 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47262 * 179.97438 * 11 10 9 13 13 O 1.21298 * 120.00095 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00248 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99926 * 359.97438 * 14 12 11 16 16 C 1.37093 * 120.00365 * 180.02562 * 14 12 11 17 17 H 1.07996 * 119.99940 * 24.38719 * 16 14 12 18 18 C 1.38952 * 120.00057 * 204.39373 * 16 14 12 19 19 N 1.31411 * 120.00200 * 12.63649 * 18 16 14 20 20 Si 1.86797 * 119.99989 * 192.63516 * 18 16 14 21 21 H 1.48498 * 109.47127 * 90.00142 * 20 18 16 22 22 H 1.48499 * 109.47154 * 209.99972 * 20 18 16 23 23 H 1.48498 * 109.47126 * 329.99846 * 20 18 16 24 24 H 1.08997 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47245 * 299.99872 * 1 2 3 26 26 H 1.08996 * 109.47572 * 60.00174 * 1 2 3 27 27 H 1.07999 * 120.00008 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.92263 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.92556 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00321 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46917 * 299.99332 * 10 9 8 32 32 H 1.09004 * 109.47342 * 59.99281 * 10 9 8 33 33 H 1.08994 * 109.47552 * 299.99602 * 11 10 9 34 34 H 1.09001 * 109.47360 * 60.00067 * 11 10 9 35 35 H 1.08997 * 109.46929 * 85.86048 * 15 14 12 36 36 H 1.09002 * 109.47121 * 205.86734 * 15 14 12 37 37 H 1.09003 * 109.47069 * 325.86664 * 15 14 12 38 38 H 0.96995 * 120.00517 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3028 3.6799 -0.0016 7 6 4.0602 2.5234 -0.0011 8 6 3.4359 1.2864 0.0057 9 8 4.1795 0.1478 0.0118 10 6 5.6003 0.3008 0.0170 11 6 6.2618 -1.0787 0.0240 12 6 7.7601 -0.9173 0.0289 13 8 8.2507 0.1920 0.0274 14 7 8.5552 -2.0056 0.0349 15 6 7.9627 -3.3455 0.0372 16 6 9.9182 -1.8588 0.0398 17 1 10.3623 -0.9531 0.4254 18 6 10.7282 -2.8754 -0.4513 19 7 10.2001 -3.8608 -1.1419 20 14 12.5681 -2.8412 -0.1300 21 1 12.8626 -3.5571 1.1373 22 1 13.2788 -3.5067 -1.2512 23 1 13.0254 -1.4326 -0.0206 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2145 2.3197 -0.0014 28 1 1.3340 4.5116 -0.0019 29 1 3.7906 4.6434 -0.0024 30 1 5.1385 2.5841 -0.0019 31 1 5.9100 0.8481 -0.8733 32 1 5.9030 0.8531 0.9067 33 1 5.9521 -1.6257 0.9144 34 1 5.9592 -1.6313 -0.8655 35 1 7.7513 -3.6510 -0.9875 36 1 8.6601 -4.0503 0.4900 37 1 7.0360 -3.3320 0.6109 38 1 10.7654 -4.5706 -1.4844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = -95.519103 kcal Electronic energy + Delta-G solvation = -21124.010455 eV Core-core repulsion = 17739.105521 eV Total energy + Delta-G solvation = -3384.904934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51286 -40.49317 -39.39825 -37.79820 -36.73413 -33.84672 -32.85169 -31.27421 -30.58114 -28.26508 -28.02517 -26.80818 -25.06587 -23.24656 -22.64432 -20.61503 -19.64171 -18.91485 -18.40741 -17.65818 -17.45729 -17.25023 -16.62236 -16.42759 -15.97791 -15.78958 -15.64567 -15.57956 -15.09876 -14.29770 -14.19255 -13.94176 -13.56792 -13.32079 -13.16210 -12.98746 -12.92637 -12.86786 -12.62496 -12.35362 -12.13938 -12.05044 -11.97977 -11.95233 -11.74101 -11.02011 -10.46255 -9.72965 -9.71124 -8.81661 -8.36680 -6.02783 0.30492 0.46117 1.36988 1.40878 1.53260 1.94223 1.99788 2.31790 2.39823 2.76421 3.05991 3.17113 3.75055 3.90074 3.94642 4.02284 4.08310 4.15200 4.31611 4.42179 4.44589 4.47853 4.50418 4.64166 4.73614 4.76772 4.77862 4.82518 5.01708 5.23281 5.34361 5.35414 5.42923 5.54223 5.77030 6.06552 6.10733 6.43573 6.62548 7.11767 7.41090 7.95935 8.66666 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.035082 B = 0.003238 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.934343 B = 8644.607297 C = 9355.355660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.078 3.922 4 C -0.171 4.171 5 C -0.115 4.115 6 C -0.121 4.121 7 C -0.186 4.186 8 C 0.069 3.931 9 O -0.322 6.322 10 C 0.093 3.907 11 C -0.114 4.114 12 C 0.441 3.559 13 O -0.632 6.632 14 N -0.459 5.459 15 C 0.118 3.882 16 C -0.348 4.348 17 H 0.073 0.927 18 C -0.002 4.002 19 N -0.895 5.895 20 Si 0.992 3.008 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.275 1.275 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.921 7.842 2.363 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.033 3.967 4 C -0.189 4.189 5 C -0.133 4.133 6 C -0.139 4.139 7 C -0.205 4.205 8 C 0.024 3.976 9 O -0.236 6.236 10 C 0.017 3.983 11 C -0.153 4.153 12 C 0.231 3.769 13 O -0.520 6.520 14 N -0.177 5.177 15 C -0.025 4.025 16 C -0.476 4.476 17 H 0.091 0.909 18 C -0.204 4.204 19 N -0.534 5.534 20 Si 0.815 3.185 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.200 1.200 24 H 0.131 0.869 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.182 0.818 28 H 0.179 0.821 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.595 7.740 2.264 21.190 hybrid contribution 1.183 -0.065 -0.080 1.187 sum -18.412 7.675 2.183 20.067 Atomic orbital electron populations 1.23354 0.76434 1.05432 1.02411 1.86158 1.23409 1.26293 1.89186 1.18562 0.88850 0.86392 1.02889 1.21426 1.01187 0.90747 1.05540 1.21283 0.94279 0.98049 0.99655 1.21225 0.94491 0.97957 1.00205 1.21362 1.01034 0.91736 1.06349 1.18721 0.89139 0.86390 1.03354 1.86026 1.18768 1.29575 1.89250 1.22201 0.76940 0.97401 1.01748 1.21224 0.90601 0.97718 1.05805 1.20578 0.89232 0.84485 0.82598 1.90479 1.77580 1.26312 1.57661 1.43809 1.05742 1.05707 1.62423 1.21494 0.96636 0.83600 1.00799 1.19656 0.81649 1.04807 1.41510 0.90871 1.26140 1.04668 0.95420 0.94160 1.70063 1.38012 1.12464 1.32814 0.84954 0.76676 0.78402 0.78430 1.18893 1.19814 1.20001 0.86900 0.91316 0.91373 0.81847 0.82122 0.83340 0.85281 0.92433 0.91997 0.87294 0.88035 0.93685 0.92148 0.91368 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.95 10.28 -79.59 -0.82 -9.77 16 3 C 0.08 2.13 6.70 22.57 0.15 2.28 16 4 C -0.17 -3.29 9.04 22.35 0.20 -3.09 16 5 C -0.11 -2.01 10.04 22.27 0.22 -1.78 16 6 C -0.12 -2.57 10.04 22.27 0.22 -2.35 16 7 C -0.19 -5.25 9.04 22.35 0.20 -5.05 16 8 C 0.07 2.20 6.70 22.57 0.15 2.35 16 9 O -0.32 -11.49 9.92 -79.64 -0.79 -12.28 16 10 C 0.09 3.41 4.03 71.98 0.29 3.70 16 11 C -0.11 -4.36 4.68 29.85 0.14 -4.22 16 12 C 0.44 22.18 7.63 87.66 0.67 22.85 16 13 O -0.63 -36.12 15.70 -3.08 -0.05 -36.17 16 14 N -0.46 -24.25 3.01 -658.87 -1.98 -26.23 16 15 C 0.12 5.28 8.44 127.77 1.08 6.36 16 16 C -0.35 -20.13 9.24 84.04 0.78 -19.36 16 17 H 0.07 4.49 7.45 -2.91 -0.02 4.47 16 18 C 0.00 -0.10 5.04 84.93 0.43 0.33 16 19 N -0.90 -47.98 10.84 21.66 0.23 -47.74 16 20 Si 0.99 42.73 29.57 68.60 2.03 44.76 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 26 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 27 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 28 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.13 3.79 6.30 -2.91 -0.02 3.78 16 31 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 32 H 0.06 2.30 7.63 -2.38 -0.02 2.28 16 33 H 0.11 3.70 7.41 -2.39 -0.02 3.68 16 34 H 0.10 3.67 8.11 -2.39 -0.02 3.65 16 35 H 0.04 2.07 7.83 -2.39 -0.02 2.05 16 36 H 0.06 2.86 6.80 -2.39 -0.02 2.84 16 37 H 0.07 2.47 6.61 -2.39 -0.02 2.45 16 38 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -72.31 321.00 5.34 -66.98 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.07 Total: 17.05 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.65 Total: 3.40 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.75 Total: -73.97 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -1.66 Total: -58.21 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.31 5.34 -66.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.540 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds