Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00326 * 2 1 4 4 C 1.52993 * 109.47506 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46775 * 65.00385 * 4 3 2 6 6 C 1.35665 * 116.99962 * 179.97438 * 5 4 3 7 7 C 1.38681 * 120.14911 * 359.95282 * 6 5 4 8 8 C 1.38082 * 120.08855 * 180.02562 * 7 6 5 9 9 C 1.38569 * 120.39781 * 0.02562 * 8 7 6 10 10 C 1.37765 * 120.30686 * 0.02562 * 9 8 7 11 11 C 1.39764 * 119.90358 * 359.97438 * 10 9 8 12 12 C 1.47431 * 120.19701 * 180.02562 * 11 10 9 13 13 O 1.21630 * 119.99818 * 125.97414 * 12 11 10 14 14 N 1.34774 * 120.00006 * 305.97051 * 12 11 10 15 15 C 1.46497 * 120.00009 * 3.69852 * 14 12 11 16 16 C 1.36912 * 119.99873 * 183.69229 * 14 12 11 17 17 H 1.07991 * 119.99813 * 7.80381 * 16 14 12 18 18 C 1.39017 * 119.99814 * 187.79436 * 16 14 12 19 19 N 1.31391 * 120.00101 * 7.90843 * 18 16 14 20 20 Si 1.86796 * 120.00025 * 187.90233 * 18 16 14 21 21 H 1.48499 * 109.47208 * 90.00706 * 20 18 16 22 22 H 1.48506 * 109.47272 * 210.00361 * 20 18 16 23 23 H 1.48492 * 109.47235 * 330.00226 * 20 18 16 24 24 H 1.09000 * 109.46964 * 299.99445 * 1 2 3 25 25 H 1.09002 * 109.47205 * 59.99875 * 1 2 3 26 26 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46436 * 60.00020 * 3 2 1 28 28 H 1.09003 * 109.46936 * 300.00767 * 3 2 1 29 29 H 1.09002 * 109.47501 * 305.00309 * 4 3 2 30 30 H 1.09000 * 109.47260 * 184.99887 * 4 3 2 31 31 H 1.07995 * 119.95948 * 0.04819 * 7 6 5 32 32 H 1.08000 * 119.79914 * 180.28166 * 8 7 6 33 33 H 1.08001 * 119.84146 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.04825 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47319 * 354.12565 * 15 14 12 36 36 H 1.09001 * 109.47243 * 114.12660 * 15 14 12 37 37 H 1.09003 * 109.47289 * 234.12847 * 15 14 12 38 38 H 0.96999 * 119.99833 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5793 -1.2202 6 6 5.3007 0.3987 -1.3810 7 6 6.1820 0.7956 -0.3866 8 6 7.5405 0.6117 -0.5518 9 6 8.0338 0.0311 -1.7093 10 6 7.1731 -0.3683 -2.7080 11 6 5.7957 -0.1882 -2.5541 12 6 4.8687 -0.6138 -3.6186 13 8 3.9467 -1.3632 -3.3583 14 7 5.0428 -0.1723 -4.8801 15 6 6.1989 0.6646 -5.2102 16 6 4.1392 -0.5062 -5.8530 17 1 3.2240 -1.0147 -5.5883 18 6 4.3998 -0.1904 -7.1815 19 7 5.5751 0.2859 -7.5252 20 14 3.0791 -0.4433 -8.4780 21 1 2.2651 0.7924 -8.6031 22 1 3.7185 -0.7489 -9.7830 23 1 2.2037 -1.5744 -8.0788 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0902 31 1 5.8054 1.2489 0.5184 32 1 8.2224 0.9184 0.2275 33 1 9.0981 -0.1081 -1.8293 34 1 7.5621 -0.8208 -3.6083 35 1 6.7430 0.9089 -4.2978 36 1 6.8561 0.1240 -5.8914 37 1 5.8580 1.5836 -5.6870 38 1 5.7568 0.5066 -8.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263812005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = -65.902840 kcal Electronic energy + Delta-G solvation = -22031.913709 eV Core-core repulsion = 18648.293033 eV Total energy + Delta-G solvation = -3383.620676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02112 -38.31594 -37.53654 -36.64489 -34.54035 -31.75838 -31.01297 -30.37341 -29.05445 -26.35498 -26.17928 -24.66474 -23.50302 -22.48223 -21.30146 -19.44066 -17.79992 -16.87785 -16.75641 -16.25455 -15.88722 -15.55640 -15.04391 -14.84920 -14.70975 -14.25741 -14.02188 -13.70358 -13.48674 -12.88483 -12.52288 -12.47630 -12.18234 -11.78566 -11.59793 -11.49393 -11.30864 -11.04515 -10.96503 -10.82199 -10.66915 -10.56015 -10.30412 -10.12533 -9.65144 -8.99787 -8.54654 -8.24299 -7.78801 -7.71290 -6.18044 -3.72325 1.53130 1.78503 3.20500 3.27982 3.34785 3.44374 3.76809 3.85424 4.15484 4.31748 4.85349 4.91465 5.09695 5.11910 5.20175 5.22843 5.24745 5.33838 5.35367 5.45054 5.47843 5.65391 5.72893 5.74353 5.85659 5.99947 6.26677 6.49708 6.61927 6.67380 6.82137 7.09813 7.14075 7.18041 7.47020 7.63392 7.78021 8.16798 8.58750 9.27808 9.52838 10.11069 10.76273 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.006351 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.829873 B = 4407.970909 C = 6163.886857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.064 3.936 4 C 0.058 3.942 5 O -0.282 6.282 6 C 0.161 3.839 7 C -0.221 4.221 8 C -0.081 4.081 9 C -0.167 4.167 10 C -0.055 4.055 11 C -0.120 4.120 12 C 0.483 3.517 13 O -0.577 6.577 14 N -0.440 5.440 15 C 0.105 3.895 16 C -0.293 4.293 17 H 0.104 0.896 18 C 0.024 3.976 19 N -0.887 5.887 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 H 0.036 0.964 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 5.584 13.752 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.296 6.296 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.194 6.194 6 C 0.114 3.886 7 C -0.240 4.240 8 C -0.100 4.100 9 C -0.185 4.185 10 C -0.074 4.074 11 C -0.124 4.124 12 C 0.271 3.729 13 O -0.462 6.462 14 N -0.158 5.158 15 C -0.038 4.038 16 C -0.421 4.421 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.528 5.528 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.123 5.064 13.514 14.432 hybrid contribution -0.529 0.441 -0.535 0.872 sum -0.406 5.505 12.979 14.104 Atomic orbital electron populations 1.22733 0.81142 1.02939 0.99592 1.88035 1.19550 1.26727 1.95291 1.22528 0.91715 0.86016 1.01016 1.22816 0.93904 0.97813 0.87188 1.86319 1.19614 1.75753 1.37711 1.18987 0.82593 0.93826 0.93175 1.21071 0.94257 1.08905 0.99737 1.20878 0.94292 0.97564 0.97226 1.20904 0.99560 1.03427 0.94637 1.21229 0.91096 0.96503 0.98604 1.19637 0.94223 1.03523 0.95056 1.17549 0.87103 0.85875 0.82407 1.90640 1.34465 1.39151 1.81928 1.43593 1.22667 1.42912 1.06603 1.21969 0.88763 0.95962 0.97098 1.19812 1.00634 1.35849 0.85830 0.87801 1.25321 0.97266 0.97060 0.98071 1.70110 1.20214 1.44184 1.18278 0.85842 0.80220 0.78836 0.79333 1.20449 1.20915 1.19357 0.94508 0.93865 0.89539 0.91551 0.91993 0.91348 0.90792 0.85765 0.86201 0.85953 0.84890 0.94929 0.90160 0.92706 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.13 10.67 -40.08 -0.43 -6.56 16 3 C 0.06 0.84 6.32 37.15 0.23 1.08 16 4 C 0.06 0.83 5.12 37.15 0.19 1.02 16 5 O -0.28 -5.76 9.30 -32.06 -0.30 -6.06 16 6 C 0.16 3.19 6.69 -38.68 -0.26 2.93 16 7 C -0.22 -3.37 9.03 -39.48 -0.36 -3.72 16 8 C -0.08 -1.11 10.03 -39.52 -0.40 -1.51 16 9 C -0.17 -2.47 10.02 -39.63 -0.40 -2.86 16 10 C -0.06 -1.02 7.39 -39.18 -0.29 -1.31 16 11 C -0.12 -2.66 4.87 -104.85 -0.51 -3.17 16 12 C 0.48 13.10 6.79 -12.52 -0.08 13.02 16 13 O -0.58 -17.80 16.35 1.92 0.03 -17.77 16 14 N -0.44 -12.10 3.02 -123.42 -0.37 -12.47 16 15 C 0.11 2.54 7.95 59.85 0.48 3.01 16 16 C -0.29 -8.57 9.53 -14.99 -0.14 -8.71 16 17 H 0.10 3.19 7.21 -52.49 -0.38 2.81 16 18 C 0.02 0.66 5.38 -17.45 -0.09 0.57 16 19 N -0.89 -23.89 9.67 55.50 0.54 -23.35 16 20 Si 0.93 21.39 29.56 -169.99 -5.02 16.37 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.88 7.66 -51.93 -0.40 0.49 16 30 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 31 H 0.12 1.49 6.30 -52.49 -0.33 1.16 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 2.40 7.35 -52.49 -0.39 2.02 16 35 H 0.03 0.68 4.60 -51.93 -0.24 0.44 16 36 H 0.08 2.00 6.74 -51.93 -0.35 1.65 16 37 H 0.05 1.38 7.43 -51.93 -0.39 0.99 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -35.29 320.11 -6.21 -41.50 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.96 Total: 1.68 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.52 Total: 1.85 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.16 Total: -35.82 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.69 Total: -30.39 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.29 -6.21 -41.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263812005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.407 kcal (2) G-P(sol) polarization free energy of solvation -35.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds