Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00326 * 2 1 4 4 C 1.52993 * 109.47506 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46775 * 65.00385 * 4 3 2 6 6 C 1.35665 * 116.99962 * 179.97438 * 5 4 3 7 7 C 1.38681 * 120.14911 * 359.95282 * 6 5 4 8 8 C 1.38082 * 120.08855 * 180.02562 * 7 6 5 9 9 C 1.38569 * 120.39781 * 0.02562 * 8 7 6 10 10 C 1.37765 * 120.30686 * 0.02562 * 9 8 7 11 11 C 1.39764 * 119.90358 * 359.97438 * 10 9 8 12 12 C 1.47431 * 120.19701 * 180.02562 * 11 10 9 13 13 O 1.21630 * 119.99818 * 125.97414 * 12 11 10 14 14 N 1.34774 * 120.00006 * 305.97051 * 12 11 10 15 15 C 1.46497 * 120.00009 * 3.69852 * 14 12 11 16 16 C 1.36912 * 119.99873 * 183.69229 * 14 12 11 17 17 H 1.07991 * 119.99813 * 7.80381 * 16 14 12 18 18 C 1.39017 * 119.99814 * 187.79436 * 16 14 12 19 19 N 1.31391 * 120.00101 * 7.90843 * 18 16 14 20 20 Si 1.86796 * 120.00025 * 187.90233 * 18 16 14 21 21 H 1.48499 * 109.47208 * 90.00706 * 20 18 16 22 22 H 1.48506 * 109.47272 * 210.00361 * 20 18 16 23 23 H 1.48492 * 109.47235 * 330.00226 * 20 18 16 24 24 H 1.09000 * 109.46964 * 299.99445 * 1 2 3 25 25 H 1.09002 * 109.47205 * 59.99875 * 1 2 3 26 26 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46436 * 60.00020 * 3 2 1 28 28 H 1.09003 * 109.46936 * 300.00767 * 3 2 1 29 29 H 1.09002 * 109.47501 * 305.00309 * 4 3 2 30 30 H 1.09000 * 109.47260 * 184.99887 * 4 3 2 31 31 H 1.07995 * 119.95948 * 0.04819 * 7 6 5 32 32 H 1.08000 * 119.79914 * 180.28166 * 8 7 6 33 33 H 1.08001 * 119.84146 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.04825 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47319 * 354.12565 * 15 14 12 36 36 H 1.09001 * 109.47243 * 114.12660 * 15 14 12 37 37 H 1.09003 * 109.47289 * 234.12847 * 15 14 12 38 38 H 0.96999 * 119.99833 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5793 -1.2202 6 6 5.3007 0.3987 -1.3810 7 6 6.1820 0.7956 -0.3866 8 6 7.5405 0.6117 -0.5518 9 6 8.0338 0.0311 -1.7093 10 6 7.1731 -0.3683 -2.7080 11 6 5.7957 -0.1882 -2.5541 12 6 4.8687 -0.6138 -3.6186 13 8 3.9467 -1.3632 -3.3583 14 7 5.0428 -0.1723 -4.8801 15 6 6.1989 0.6646 -5.2102 16 6 4.1392 -0.5062 -5.8530 17 1 3.2240 -1.0147 -5.5883 18 6 4.3998 -0.1904 -7.1815 19 7 5.5751 0.2859 -7.5252 20 14 3.0791 -0.4433 -8.4780 21 1 2.2651 0.7924 -8.6031 22 1 3.7185 -0.7489 -9.7830 23 1 2.2037 -1.5744 -8.0788 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0902 31 1 5.8054 1.2489 0.5184 32 1 8.2224 0.9184 0.2275 33 1 9.0981 -0.1081 -1.8293 34 1 7.5621 -0.8208 -3.6083 35 1 6.7430 0.9089 -4.2978 36 1 6.8561 0.1240 -5.8914 37 1 5.8580 1.5836 -5.6870 38 1 5.7568 0.5066 -8.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263812005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = -90.900718 kcal Electronic energy + Delta-G solvation = -22032.997698 eV Core-core repulsion = 18648.293033 eV Total energy + Delta-G solvation = -3384.704666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46047 -39.97364 -38.85816 -37.96198 -36.68096 -33.75476 -32.29073 -31.74383 -30.31743 -28.26885 -27.29162 -26.61924 -24.69465 -24.03257 -22.50657 -21.15946 -19.22977 -18.88720 -18.09221 -17.80881 -17.20173 -16.84230 -16.58153 -16.21988 -16.00171 -15.86205 -15.64267 -15.33212 -15.13381 -14.37845 -14.06944 -13.76357 -13.61638 -13.42623 -13.19096 -12.87395 -12.78989 -12.66077 -12.49667 -12.35629 -12.17046 -12.14585 -11.93852 -11.75975 -11.09032 -10.69369 -10.43208 -9.88851 -9.78615 -9.11342 -8.27813 -5.93963 0.18862 0.50520 1.35350 1.36804 1.50757 2.05102 2.23929 2.27747 2.79346 2.82000 3.04955 3.18554 3.80755 3.93747 4.02225 4.08971 4.20502 4.25870 4.29947 4.42854 4.47199 4.49405 4.51638 4.60608 4.66765 4.74563 4.79814 4.98835 5.10820 5.31587 5.39557 5.44629 5.46958 5.55856 5.90280 6.00918 6.18890 6.45665 6.57382 7.13947 7.44318 8.02971 8.64369 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.006351 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.829873 B = 4407.970909 C = 6163.886857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.421 6.421 3 C 0.059 3.941 4 C 0.048 3.952 5 O -0.330 6.330 6 C 0.142 3.858 7 C -0.211 4.211 8 C -0.058 4.058 9 C -0.156 4.156 10 C -0.066 4.066 11 C -0.171 4.171 12 C 0.475 3.525 13 O -0.634 6.634 14 N -0.455 5.455 15 C 0.123 3.877 16 C -0.344 4.344 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.894 5.894 20 Si 0.996 3.004 21 H -0.267 1.267 22 H -0.264 1.264 23 H -0.277 1.277 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 7.410 15.774 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.341 6.341 3 C -0.017 4.017 4 C -0.026 4.026 5 O -0.243 6.243 6 C 0.095 3.905 7 C -0.229 4.229 8 C -0.076 4.076 9 C -0.174 4.174 10 C -0.085 4.085 11 C -0.175 4.175 12 C 0.265 3.735 13 O -0.523 6.523 14 N -0.172 5.172 15 C -0.020 4.020 16 C -0.471 4.471 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.533 5.533 20 Si 0.819 3.181 21 H -0.193 1.193 22 H -0.188 1.188 23 H -0.202 1.202 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.180 0.820 32 H 0.191 0.809 33 H 0.180 0.820 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.081 6.926 15.534 17.135 hybrid contribution -1.067 -0.097 -1.040 1.493 sum 1.014 6.829 14.494 16.054 Atomic orbital electron populations 1.22899 0.79503 1.03535 1.00949 1.87972 1.21667 1.28853 1.95601 1.22788 0.91377 0.85147 1.02436 1.23264 0.94535 0.99415 0.85426 1.86267 1.20511 1.76710 1.40856 1.19279 0.83249 0.94456 0.93495 1.21505 0.94396 1.07530 0.99483 1.21529 0.94274 0.94351 0.97452 1.21339 1.00856 1.01594 0.93588 1.21257 0.90054 0.97289 0.99897 1.19442 0.94836 1.08119 0.95078 1.18479 0.87122 0.84600 0.83273 1.90558 1.37174 1.41514 1.83024 1.43830 1.23169 1.43361 1.06850 1.21813 0.87626 0.94319 0.98211 1.19719 1.00978 1.38809 0.87631 0.91110 1.26118 0.99541 0.95798 0.99069 1.70188 1.20957 1.42970 1.19232 0.84908 0.77535 0.78725 0.76966 1.19251 1.18802 1.20249 0.91116 0.94416 0.89499 0.86867 0.93538 0.90054 0.87313 0.81978 0.80921 0.82013 0.85814 0.91758 0.91267 0.94351 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.42 -13.99 10.67 -144.34 -1.54 -15.53 16 3 C 0.06 1.51 6.32 71.98 0.45 1.96 16 4 C 0.05 1.29 5.12 71.98 0.37 1.66 16 5 O -0.33 -13.86 9.30 -77.04 -0.72 -14.57 16 6 C 0.14 5.59 6.69 22.85 0.15 5.75 16 7 C -0.21 -5.62 9.03 22.34 0.20 -5.42 16 8 C -0.06 -1.27 10.03 22.31 0.22 -1.04 16 9 C -0.16 -3.97 10.02 22.24 0.22 -3.75 16 10 C -0.07 -2.40 7.39 22.53 0.17 -2.23 16 11 C -0.17 -7.78 4.87 -20.01 -0.10 -7.88 16 12 C 0.47 27.63 6.79 86.67 0.59 28.22 16 13 O -0.63 -42.53 16.35 -0.94 -0.02 -42.55 16 14 N -0.45 -26.63 3.02 -662.64 -2.00 -28.63 16 15 C 0.12 6.14 7.95 127.77 1.02 7.16 16 16 C -0.34 -21.43 9.53 84.09 0.80 -20.63 16 17 H 0.07 4.76 7.21 -2.92 -0.02 4.74 16 18 C 0.00 -0.24 5.38 84.95 0.46 0.22 16 19 N -0.89 -48.91 9.67 21.68 0.21 -48.70 16 20 Si 1.00 44.83 29.56 68.60 2.03 46.86 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.92 7.66 -2.39 -0.02 1.90 16 30 H 0.11 2.07 7.66 -2.39 -0.02 2.05 16 31 H 0.16 3.02 6.30 -2.91 -0.02 3.00 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 33 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.12 4.56 7.35 -2.91 -0.02 4.54 16 35 H 0.06 2.76 4.60 -2.39 -0.01 2.75 16 36 H 0.07 3.56 6.74 -2.39 -0.02 3.54 16 37 H 0.04 1.99 7.43 -2.39 -0.02 1.97 16 38 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -85.65 320.11 4.83 -80.81 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.06 Total: 16.38 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.80 Total: 5.92 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -1.79 Total: -77.33 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -2.27 Total: -72.65 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -85.65 4.83 -80.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263812005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal (2) G-P(sol) polarization free energy of solvation -85.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds