Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 116.99931 * 2 1 4 4 C 1.38678 * 120.03433 * 0.02562 * 3 2 1 5 5 C 1.38203 * 120.08062 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.91060 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.46784 * 90.00146 * 6 5 4 8 8 C 1.46904 * 110.99887 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47478 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47361 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99658 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99903 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00047 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46974 * 89.99645 * 14 12 10 16 16 H 1.48493 * 109.47271 * 209.99955 * 14 12 10 17 17 H 1.48502 * 109.46904 * 330.00149 * 14 12 10 18 18 C 1.38244 * 120.18045 * 0.02562 * 5 4 3 19 19 C 1.38640 * 120.12764 * 359.97438 * 18 5 4 20 20 C 1.38939 * 120.02484 * 179.72599 * 3 2 1 21 21 O 1.36597 * 131.52841 * 0.65578 * 20 3 2 22 22 C 1.43991 * 105.53292 * 162.28035 * 21 20 3 23 23 O 1.36514 * 131.48161 * 180.02562 * 19 18 5 24 24 H 1.09001 * 109.47103 * 300.00177 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99681 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.95588 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47310 * 210.00261 * 6 5 4 29 29 H 1.09000 * 109.46988 * 330.00323 * 6 5 4 30 30 H 1.00893 * 111.00424 * 56.05171 * 7 6 5 31 31 H 1.09007 * 109.47054 * 299.99976 * 8 7 6 32 32 H 1.08996 * 109.47426 * 59.99562 * 8 7 6 33 33 H 1.09007 * 109.46827 * 299.99953 * 9 8 7 34 34 H 1.09004 * 109.47019 * 59.99290 * 9 8 7 35 35 H 0.96998 * 119.99827 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.93085 * 180.02562 * 18 5 4 37 37 H 1.09001 * 110.57851 * 268.29615 * 22 21 20 38 38 H 1.08994 * 110.70557 * 145.47156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2918 2.3752 0.0005 5 6 1.9182 3.6071 0.0011 6 6 1.0945 4.8691 0.0011 7 7 0.8263 5.2787 1.3861 8 6 0.0231 6.5081 1.4253 9 6 -0.2345 6.9028 2.8809 10 6 -1.0580 8.1643 2.9211 11 1 -1.3664 8.6374 2.0005 12 6 -1.4177 8.7144 4.1331 13 7 -1.0426 8.1379 5.2542 14 14 -2.4391 10.2776 4.1831 15 1 -3.8818 9.9260 4.1959 16 1 -2.1062 11.0475 5.4084 17 1 -2.1412 11.1019 2.9843 18 6 3.2985 3.6850 0.0005 19 6 4.0608 2.5269 0.0000 20 6 3.4339 1.2851 0.0058 21 8 4.3923 0.3117 0.0002 22 6 5.6060 0.9680 -0.4115 23 8 5.4122 2.3340 -0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2133 2.3185 0.0005 28 1 1.6412 5.6599 -0.5124 29 1 0.1508 4.6869 -0.5131 30 1 1.6856 5.3914 1.9027 31 1 0.5621 7.3106 0.9216 32 1 -0.9280 6.3370 0.9211 33 1 -0.7734 6.1004 3.3850 34 1 0.7168 7.0740 3.3847 35 1 -1.2953 8.5252 6.1068 36 1 3.7838 4.6498 0.0014 37 1 5.7263 0.9075 -1.4932 38 1 6.4690 0.5343 0.0936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273068061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -75.517624 kcal Electronic energy + Delta-G solvation = -20953.009190 eV Core-core repulsion = 17568.971585 eV Total energy + Delta-G solvation = -3384.037605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28188 -39.67717 -37.69930 -36.25771 -35.47823 -33.01189 -31.11753 -29.98048 -28.99557 -27.46322 -26.25379 -25.06370 -23.43937 -22.65706 -21.64562 -20.58756 -18.37596 -17.99900 -17.71794 -17.03140 -16.32683 -16.06088 -15.69372 -15.26255 -15.06047 -14.51573 -14.38977 -14.14718 -14.04741 -13.44065 -13.11553 -13.04826 -12.85912 -12.40269 -12.14135 -11.90293 -11.72795 -11.51839 -11.35716 -11.06522 -10.92641 -10.72124 -10.52675 -10.02595 -9.42482 -9.16954 -8.41844 -8.36432 -8.12797 -7.85766 -6.00497 -4.03462 0.97611 1.16241 2.59720 3.01024 3.29181 3.31585 3.37763 3.40361 3.42702 4.42955 4.47730 4.56146 4.59148 4.68962 4.84456 4.97569 5.03383 5.04899 5.07669 5.21104 5.34546 5.35436 5.44256 5.57695 5.73481 5.94473 5.96797 6.24581 6.28606 6.32746 6.44361 6.78700 6.94034 7.21894 7.40152 7.70373 7.78051 7.90718 8.06265 8.41526 9.03857 9.60439 11.10860 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.003066 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.261987 B = 9128.895247 C = 9701.848861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.149 3.851 4 C -0.176 4.176 5 C -0.021 4.021 6 C 0.097 3.903 7 N -0.686 5.686 8 C 0.065 3.935 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.131 4.131 19 C 0.072 3.928 20 C -0.012 4.012 21 O -0.303 6.303 22 C 0.213 3.787 23 O -0.307 6.307 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.146 0.854 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.340 0.660 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.261 0.739 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 -15.637 -14.152 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.103 3.897 4 C -0.195 4.195 5 C -0.022 4.022 6 C -0.032 4.032 7 N -0.317 5.317 8 C -0.062 4.062 9 C -0.013 4.013 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.150 4.150 19 C 0.027 3.973 20 C -0.057 4.057 21 O -0.219 6.219 22 C 0.101 3.899 23 O -0.223 6.223 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.164 0.836 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.728 -16.307 -13.792 23.072 hybrid contribution 0.133 1.496 -0.141 1.509 sum 8.861 -14.811 -13.933 22.182 Atomic orbital electron populations 1.23143 0.77767 1.04119 1.02002 1.86137 1.21782 1.25892 1.88755 1.17787 0.87229 0.85559 0.99108 1.20926 1.00489 0.90139 1.07956 1.19439 0.91868 0.95153 0.95761 1.20878 0.98061 0.91818 0.92396 1.60656 1.23790 1.37052 1.10247 1.22203 0.95542 0.86913 1.01578 1.19075 0.96979 0.96214 0.89009 1.21166 1.33329 1.09362 0.92273 0.92726 1.25008 0.96192 0.97450 0.95731 1.69975 1.45963 1.39902 0.97331 0.86583 0.80548 0.83315 0.77472 1.20635 1.21224 1.19915 1.19899 0.92103 0.95991 1.07008 1.19401 0.82216 0.93800 1.01877 1.18749 0.88727 0.86583 1.11597 1.87402 1.17289 1.31812 1.85417 1.25574 0.89029 0.75370 0.99941 1.87372 1.19513 1.30642 1.84753 0.91881 0.92380 0.88128 0.83594 0.94250 0.89991 0.84274 0.96421 0.92169 0.95601 0.96737 0.92963 0.84591 0.90142 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.98 10.50 -19.72 -0.21 -4.19 16 3 C 0.15 2.02 6.69 -39.16 -0.26 1.75 16 4 C -0.18 -2.21 8.68 -39.43 -0.34 -2.55 16 5 C -0.02 -0.28 5.39 -104.63 -0.56 -0.84 16 6 C 0.10 1.32 5.81 -4.97 -0.03 1.30 16 7 N -0.69 -11.82 6.49 -115.05 -0.75 -12.56 16 8 C 0.07 1.33 5.62 -3.82 -0.02 1.31 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.13 -1.69 9.71 -39.43 -0.38 -2.07 16 19 C 0.07 0.97 7.15 -39.11 -0.28 0.69 16 20 C -0.01 -0.17 7.09 -39.00 -0.28 -0.45 16 21 O -0.30 -4.02 11.40 -46.30 -0.53 -4.55 16 22 C 0.21 2.00 8.90 101.05 0.90 2.90 16 23 O -0.31 -3.83 11.40 -45.74 -0.52 -4.35 16 24 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.15 1.60 6.29 -52.48 -0.33 1.27 16 28 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.34 5.81 8.72 -39.30 -0.34 5.47 16 31 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -32.83 326.21 -7.43 -40.26 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.23 Total: -0.18 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -0.82 Total: -9.73 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.01 Total: -38.70 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.26 Total: -13.09 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.83 -7.43 -40.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273068061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.259 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds