Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 116.99931 * 2 1 4 4 C 1.38678 * 120.03433 * 0.02562 * 3 2 1 5 5 C 1.38203 * 120.08062 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.91060 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.46784 * 90.00146 * 6 5 4 8 8 C 1.46904 * 110.99887 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47478 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47361 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99658 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99903 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00047 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46974 * 89.99645 * 14 12 10 16 16 H 1.48493 * 109.47271 * 209.99955 * 14 12 10 17 17 H 1.48502 * 109.46904 * 330.00149 * 14 12 10 18 18 C 1.38244 * 120.18045 * 0.02562 * 5 4 3 19 19 C 1.38640 * 120.12764 * 359.97438 * 18 5 4 20 20 C 1.38939 * 120.02484 * 179.72599 * 3 2 1 21 21 O 1.36597 * 131.52841 * 0.65578 * 20 3 2 22 22 C 1.43991 * 105.53292 * 162.28035 * 21 20 3 23 23 O 1.36514 * 131.48161 * 180.02562 * 19 18 5 24 24 H 1.09001 * 109.47103 * 300.00177 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99681 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.95588 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47310 * 210.00261 * 6 5 4 29 29 H 1.09000 * 109.46988 * 330.00323 * 6 5 4 30 30 H 1.00893 * 111.00424 * 56.05171 * 7 6 5 31 31 H 1.09007 * 109.47054 * 299.99976 * 8 7 6 32 32 H 1.08996 * 109.47426 * 59.99562 * 8 7 6 33 33 H 1.09007 * 109.46827 * 299.99953 * 9 8 7 34 34 H 1.09004 * 109.47019 * 59.99290 * 9 8 7 35 35 H 0.96998 * 119.99827 * 179.97438 * 13 12 10 36 36 H 1.08004 * 119.93085 * 180.02562 * 18 5 4 37 37 H 1.09001 * 110.57851 * 268.29615 * 22 21 20 38 38 H 1.08994 * 110.70557 * 145.47156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2918 2.3752 0.0005 5 6 1.9182 3.6071 0.0011 6 6 1.0945 4.8691 0.0011 7 7 0.8263 5.2787 1.3861 8 6 0.0231 6.5081 1.4253 9 6 -0.2345 6.9028 2.8809 10 6 -1.0580 8.1643 2.9211 11 1 -1.3664 8.6374 2.0005 12 6 -1.4177 8.7144 4.1331 13 7 -1.0426 8.1379 5.2542 14 14 -2.4391 10.2776 4.1831 15 1 -3.8818 9.9260 4.1959 16 1 -2.1062 11.0475 5.4084 17 1 -2.1412 11.1019 2.9843 18 6 3.2985 3.6850 0.0005 19 6 4.0608 2.5269 0.0000 20 6 3.4339 1.2851 0.0058 21 8 4.3923 0.3117 0.0002 22 6 5.6060 0.9680 -0.4115 23 8 5.4122 2.3340 -0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2133 2.3185 0.0005 28 1 1.6412 5.6599 -0.5124 29 1 0.1508 4.6869 -0.5131 30 1 1.6856 5.3914 1.9027 31 1 0.5621 7.3106 0.9216 32 1 -0.9280 6.3370 0.9211 33 1 -0.7734 6.1004 3.3850 34 1 0.7168 7.0740 3.3847 35 1 -1.2953 8.5252 6.1068 36 1 3.7838 4.6498 0.0014 37 1 5.7263 0.9075 -1.4932 38 1 6.4690 0.5343 0.0936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273068061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -98.726904 kcal Electronic energy + Delta-G solvation = -20954.015620 eV Core-core repulsion = 17568.971585 eV Total energy + Delta-G solvation = -3385.044035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19358 -40.58947 -38.74702 -37.21845 -36.86446 -34.96539 -32.51348 -30.92660 -30.51093 -28.31338 -27.32392 -26.34581 -25.00583 -23.59360 -22.68526 -22.39823 -19.31219 -18.96064 -18.60775 -18.46296 -17.93167 -17.00556 -16.66635 -16.46844 -16.27959 -16.07885 -15.53416 -15.37425 -15.20059 -14.51719 -14.38975 -14.20149 -13.98866 -13.64020 -13.59400 -13.28299 -12.82547 -12.71858 -12.66685 -12.46257 -12.28635 -12.23752 -11.89170 -11.64538 -11.36743 -11.20606 -10.54352 -9.38289 -9.30989 -9.02897 -8.18168 -6.29574 -0.02521 0.17588 1.42512 1.43863 1.54809 1.72104 2.16707 2.38795 2.44440 2.49138 3.15582 3.47063 3.62337 3.67810 3.82942 3.95576 4.04812 4.16824 4.28544 4.35132 4.41074 4.45788 4.54290 4.61091 4.69523 4.73657 4.76452 4.98443 4.99161 5.11304 5.30572 5.42057 5.47650 5.70350 5.80386 5.88815 6.13963 6.27647 6.31962 6.50592 6.88609 7.39892 8.93948 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.003066 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.261987 B = 9128.895247 C = 9701.848861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.139 3.861 4 C -0.174 4.174 5 C -0.026 4.026 6 C 0.103 3.897 7 N -0.694 5.694 8 C 0.084 3.916 9 C 0.029 3.971 10 C -0.542 4.542 11 H 0.063 0.937 12 C -0.001 4.001 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.134 4.134 19 C 0.063 3.937 20 C -0.030 4.030 21 O -0.322 6.322 22 C 0.204 3.796 23 O -0.319 6.319 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.161 0.839 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.339 0.661 31 H 0.024 0.976 32 H 0.066 0.934 33 H -0.006 1.006 34 H -0.011 1.011 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.105 0.895 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.691 -15.301 -15.588 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.093 3.907 4 C -0.193 4.193 5 C -0.027 4.027 6 C -0.026 4.026 7 N -0.325 5.325 8 C -0.044 4.044 9 C -0.008 4.008 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.199 4.199 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.185 1.185 18 C -0.154 4.154 19 C 0.018 3.982 20 C -0.074 4.074 21 O -0.239 6.239 22 C 0.094 3.906 23 O -0.236 6.236 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.179 0.821 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.156 0.844 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.012 0.988 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.123 0.877 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.391 -15.987 -15.256 23.638 hybrid contribution 0.299 1.274 0.292 1.341 sum 8.690 -14.713 -14.964 22.714 Atomic orbital electron populations 1.23430 0.75790 1.05893 1.02661 1.86117 1.23891 1.25714 1.88680 1.17967 0.87401 0.86141 0.99213 1.21099 1.01231 0.89757 1.07223 1.19386 0.91885 0.94999 0.96428 1.20895 0.99104 0.92350 0.90217 1.60544 1.23783 1.35302 1.12843 1.21808 0.96564 0.88437 0.97601 1.18943 0.94934 0.94730 0.92218 1.21635 1.33484 1.10200 0.92769 0.91836 1.25989 0.97451 1.01148 0.95315 1.70117 1.47380 1.41796 0.98035 0.85424 0.78789 0.78838 0.77840 1.19774 1.20969 1.18547 1.20060 0.92227 0.96401 1.06672 1.19543 0.82758 0.93854 1.02063 1.19057 0.89337 0.87086 1.11941 1.87358 1.18279 1.32512 1.85785 1.26116 0.88611 0.73963 1.01939 1.87340 1.18939 1.32273 1.85004 0.91970 0.90884 0.85931 0.82124 0.92827 0.88712 0.84399 0.95752 0.91591 0.98757 0.99235 0.92825 0.83544 0.87704 0.82112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -8.21 10.50 -93.49 -0.98 -9.19 16 3 C 0.14 3.69 6.69 22.54 0.15 3.84 16 4 C -0.17 -4.19 8.68 22.37 0.19 -4.00 16 5 C -0.03 -0.65 5.39 -19.87 -0.11 -0.75 16 6 C 0.10 2.60 5.81 85.56 0.50 3.10 16 7 N -0.69 -23.31 6.49 -517.92 -3.36 -26.68 16 8 C 0.08 3.36 5.62 86.30 0.49 3.85 16 9 C 0.03 1.54 5.23 29.85 0.16 1.69 16 10 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 11 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 12 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 13 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 14 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 C -0.13 -3.36 9.71 22.37 0.22 -3.14 16 19 C 0.06 1.67 7.15 22.58 0.16 1.83 16 20 C -0.03 -0.83 7.09 22.65 0.16 -0.67 16 21 O -0.32 -8.40 11.40 -76.91 -0.88 -9.28 16 22 C 0.20 3.56 8.90 113.37 1.01 4.57 16 23 O -0.32 -7.71 11.40 -76.21 -0.87 -8.58 16 24 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 25 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 26 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.16 3.26 6.29 -2.91 -0.02 3.24 16 28 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 29 H 0.09 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.34 11.51 8.72 -89.70 -0.78 10.73 16 31 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 34 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.02 326.21 1.25 -69.78 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.29 Total: 13.03 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.73 Total: -18.22 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.08 Total: -83.45 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -2.73 Total: -27.04 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.02 1.25 -69.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273068061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.951 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds