Wall clock time and date at job start Wed Apr 15 2020 11:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47189 * 64.99623 * 9 8 7 11 11 C 1.46500 * 120.00253 * 269.99798 * 10 9 8 12 12 C 1.34776 * 120.00152 * 89.99993 * 10 9 8 13 13 O 1.21693 * 120.00130 * 0.02562 * 12 10 9 14 14 C 1.46379 * 120.00204 * 179.97438 * 12 10 9 15 15 H 1.07995 * 119.99966 * 359.97438 * 14 12 10 16 16 C 1.40051 * 119.99684 * 180.02562 * 14 12 10 17 17 N 1.30664 * 120.00212 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99520 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47704 * 59.99702 * 18 16 14 20 20 H 1.48499 * 109.47082 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47161 * 299.99477 * 18 16 14 22 22 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 23 23 C 1.38135 * 119.99861 * 359.97438 * 22 6 5 24 24 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 25 25 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 27 27 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 29 29 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 30 30 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 31 31 H 1.09000 * 109.47134 * 184.99848 * 9 8 7 32 32 H 1.08997 * 109.47167 * 304.99548 * 9 8 7 33 33 H 1.09000 * 109.47301 * 90.00139 * 11 10 9 34 34 H 1.09003 * 109.47542 * 210.00241 * 11 10 9 35 35 H 1.09003 * 109.46811 * 330.00350 * 11 10 9 36 36 H 0.97005 * 119.99686 * 180.02562 * 17 16 14 37 37 H 1.08005 * 120.00034 * 180.02562 * 22 6 5 38 38 H 1.08001 * 119.99636 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 7 5.4719 6.9870 1.2539 11 6 4.1941 7.6977 1.3444 12 6 6.2913 6.9352 2.3227 13 8 7.3531 6.3453 2.2474 14 6 5.9047 7.5895 3.5737 15 1 4.9631 8.1141 3.6402 16 6 6.7565 7.5361 4.6841 17 7 7.8961 6.9019 4.6035 18 14 6.2628 8.3705 6.2808 19 1 4.9921 7.7819 6.7748 20 1 7.3285 8.1685 7.2950 21 1 6.0751 9.8242 6.0423 22 6 4.0584 2.5152 0.0004 23 6 3.4313 1.2844 0.0006 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2123 2.3183 0.0098 28 1 1.3296 4.5114 0.0014 29 1 5.7129 4.3755 0.8906 30 1 5.7123 4.3770 -0.8893 31 1 6.9454 6.3341 -0.0883 32 1 5.4242 6.8720 -0.8397 33 1 3.4178 7.0086 1.6771 34 1 4.2834 8.5164 2.0584 35 1 3.9302 8.0968 0.3650 36 1 8.4858 6.8646 5.3728 37 1 5.1370 2.5718 0.0009 38 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274016046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:55 Heat of formation + Delta-G solvation = -79.403649 kcal Electronic energy + Delta-G solvation = -21327.981371 eV Core-core repulsion = 17943.775255 eV Total energy + Delta-G solvation = -3384.206115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29918 -38.94868 -37.60725 -36.15308 -33.87572 -32.43826 -31.28475 -30.10359 -28.92807 -27.16500 -26.14431 -25.21959 -23.31873 -22.33639 -21.32445 -19.08885 -18.40069 -17.56450 -16.43216 -16.25673 -15.88415 -15.63654 -15.53042 -14.77350 -14.64250 -14.14062 -14.04575 -13.71622 -13.39948 -13.05916 -12.68621 -12.45801 -12.28811 -11.99888 -11.68631 -11.51889 -11.42087 -11.26248 -11.14068 -10.99607 -10.88425 -10.53022 -10.29446 -10.13391 -10.10512 -9.05431 -8.84843 -7.63110 -7.59334 -7.23089 -6.19763 -4.64462 1.28879 1.55840 3.15815 3.20779 3.22079 3.22599 3.56666 3.80177 4.09393 4.53800 4.60521 4.76567 4.82877 4.95085 4.97940 5.17339 5.27535 5.32729 5.50240 5.56321 5.63784 5.69942 5.84488 5.90422 5.99916 6.13208 6.23052 6.30704 6.35210 6.45209 6.56584 6.64604 6.68861 7.30682 7.45024 7.61868 7.71672 8.13853 8.35459 9.02257 9.41401 10.56464 10.75239 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.003748 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.275802 B = 7469.848617 C = 7863.957363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.077 3.923 4 C -0.168 4.168 5 C -0.119 4.119 6 C 0.110 3.890 7 O -0.305 6.305 8 C 0.044 3.956 9 C 0.131 3.869 10 N -0.644 5.644 11 C 0.109 3.891 12 C 0.556 3.444 13 O -0.581 6.581 14 C -0.542 4.542 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.171 4.171 23 C -0.109 4.109 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.269 0.731 37 H 0.136 0.864 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 -8.138 -9.468 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.032 3.968 4 C -0.186 4.186 5 C -0.138 4.138 6 C 0.064 3.936 7 O -0.219 6.219 8 C -0.032 4.032 9 C 0.006 3.994 10 N -0.382 5.382 11 C -0.035 4.035 12 C 0.362 3.638 13 O -0.464 6.464 14 C -0.578 4.578 15 H 0.090 0.910 16 C -0.133 4.133 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.189 4.189 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.505 -8.495 -9.410 17.807 hybrid contribution -0.457 0.336 0.821 0.999 sum -12.962 -8.159 -8.588 17.560 Atomic orbital electron populations 1.22990 0.78906 1.03559 1.01184 1.86054 1.20924 1.26939 1.89666 1.18839 0.92231 0.84089 1.01615 1.20983 0.99735 0.91502 1.06413 1.20202 0.91627 0.97852 1.04108 1.19015 0.92225 0.85060 0.97342 1.86134 1.22114 1.25595 1.88032 1.23555 0.77422 1.01234 1.01009 1.21077 1.00427 0.89386 0.88473 1.47916 1.20954 1.57608 1.11731 1.21352 0.86050 0.96265 0.99852 1.18265 0.82568 0.80458 0.82517 1.90587 1.24479 1.47979 1.83356 1.20983 1.05857 1.35927 0.95067 0.90975 1.25740 0.94044 0.93763 0.99722 1.70007 1.07800 1.31884 1.29949 0.86451 0.78896 0.80273 0.81261 1.19255 1.20559 1.19230 1.21179 1.00558 0.91448 1.05762 1.20188 0.91308 0.97994 1.03299 0.92897 0.88569 0.92812 0.85176 0.85004 0.91310 0.92567 0.88779 0.91815 0.94774 0.91387 0.94188 0.92071 0.84645 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.89 10.50 -19.72 -0.21 -4.09 16 3 C 0.08 1.02 6.69 -39.24 -0.26 0.75 16 4 C -0.17 -2.07 9.03 -39.45 -0.36 -2.43 16 5 C -0.12 -1.66 9.98 -39.45 -0.39 -2.05 16 6 C 0.11 1.74 6.69 -39.24 -0.26 1.48 16 7 O -0.31 -5.33 9.70 -19.68 -0.19 -5.52 16 8 C 0.04 0.78 5.08 37.16 0.19 0.97 16 9 C 0.13 2.50 5.86 -4.05 -0.02 2.48 16 10 N -0.64 -14.73 2.84 -183.25 -0.52 -15.25 16 11 C 0.11 2.11 9.79 59.85 0.59 2.69 16 12 C 0.56 15.77 7.61 -12.99 -0.10 15.67 16 13 O -0.58 -18.45 14.60 5.20 0.08 -18.37 16 14 C -0.54 -15.29 8.74 -35.63 -0.31 -15.60 16 15 H 0.07 1.87 5.99 -52.49 -0.31 1.55 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 17 N -0.77 -22.96 11.83 55.55 0.66 -22.30 16 18 Si 0.91 20.18 29.56 -169.99 -5.02 15.16 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.17 -2.54 9.03 -39.45 -0.36 -2.89 16 23 C -0.11 -1.50 9.98 -39.45 -0.39 -1.89 16 24 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 27 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 30 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 31 H 0.09 1.90 7.42 -51.93 -0.39 1.51 16 32 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.34 6.09 -51.93 -0.32 1.02 16 35 H 0.04 0.65 7.89 -51.93 -0.41 0.24 16 36 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 37 H 0.14 1.92 6.29 -52.48 -0.33 1.59 16 38 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -34.77 323.34 -6.04 -40.81 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.91 Total: 1.97 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.79 Total: 2.73 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.14 Total: -37.55 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.32 Total: -27.99 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.77 -6.04 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274016046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.594 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds