Wall clock time and date at job start Wed Apr 15 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47189 * 64.99623 * 9 8 7 11 11 C 1.46500 * 120.00253 * 269.99798 * 10 9 8 12 12 C 1.34776 * 120.00152 * 89.99993 * 10 9 8 13 13 O 1.21693 * 120.00130 * 0.02562 * 12 10 9 14 14 C 1.46379 * 120.00204 * 179.97438 * 12 10 9 15 15 H 1.07995 * 119.99966 * 359.97438 * 14 12 10 16 16 C 1.40051 * 119.99684 * 180.02562 * 14 12 10 17 17 N 1.30664 * 120.00212 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99520 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47704 * 59.99702 * 18 16 14 20 20 H 1.48499 * 109.47082 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47161 * 299.99477 * 18 16 14 22 22 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 23 23 C 1.38135 * 119.99861 * 359.97438 * 22 6 5 24 24 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 25 25 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 27 27 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 28 28 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 29 29 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 30 30 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 31 31 H 1.09000 * 109.47134 * 184.99848 * 9 8 7 32 32 H 1.08997 * 109.47167 * 304.99548 * 9 8 7 33 33 H 1.09000 * 109.47301 * 90.00139 * 11 10 9 34 34 H 1.09003 * 109.47542 * 210.00241 * 11 10 9 35 35 H 1.09003 * 109.46811 * 330.00350 * 11 10 9 36 36 H 0.97005 * 119.99686 * 180.02562 * 17 16 14 37 37 H 1.08005 * 120.00034 * 180.02562 * 22 6 5 38 38 H 1.08001 * 119.99636 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 7 5.4719 6.9870 1.2539 11 6 4.1941 7.6977 1.3444 12 6 6.2913 6.9352 2.3227 13 8 7.3531 6.3453 2.2474 14 6 5.9047 7.5895 3.5737 15 1 4.9631 8.1141 3.6402 16 6 6.7565 7.5361 4.6841 17 7 7.8961 6.9019 4.6035 18 14 6.2628 8.3705 6.2808 19 1 4.9921 7.7819 6.7748 20 1 7.3285 8.1685 7.2950 21 1 6.0751 9.8242 6.0423 22 6 4.0584 2.5152 0.0004 23 6 3.4313 1.2844 0.0006 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2123 2.3183 0.0098 28 1 1.3296 4.5114 0.0014 29 1 5.7129 4.3755 0.8906 30 1 5.7123 4.3770 -0.8893 31 1 6.9454 6.3341 -0.0883 32 1 5.4242 6.8720 -0.8397 33 1 3.4178 7.0086 1.6771 34 1 4.2834 8.5164 2.0584 35 1 3.9302 8.0968 0.3650 36 1 8.4858 6.8646 5.3728 37 1 5.1370 2.5718 0.0009 38 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274016046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:54 Heat of formation + Delta-G solvation = -103.052963 kcal Electronic energy + Delta-G solvation = -21329.006882 eV Core-core repulsion = 17943.775255 eV Total energy + Delta-G solvation = -3385.231627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37132 -40.17141 -39.39517 -37.32938 -35.75717 -34.58555 -32.39004 -31.52634 -29.99742 -28.33054 -27.85957 -26.83765 -24.73627 -23.52417 -22.55418 -20.93917 -19.47500 -18.74588 -18.25720 -17.59420 -17.38807 -17.18484 -16.57785 -16.12600 -15.90149 -15.73087 -15.63724 -15.07137 -14.51714 -14.36278 -14.01856 -13.74066 -13.53595 -13.39198 -13.21854 -13.07297 -12.93569 -12.90161 -12.69078 -12.48904 -12.27712 -12.07483 -12.03220 -11.61307 -11.31700 -10.91308 -10.10606 -9.79635 -9.10342 -8.70876 -8.28424 -6.83379 0.23696 0.46535 1.39493 1.42757 1.54127 2.21665 2.26168 2.43431 2.48237 2.72469 2.89030 3.59812 3.79159 3.84934 4.01013 4.11156 4.18266 4.27954 4.32080 4.42807 4.43827 4.57814 4.63910 4.68381 4.74964 4.82461 4.93871 4.96831 5.00234 5.10927 5.27785 5.35625 5.37745 5.58164 5.76327 6.14322 6.31979 6.42166 6.54983 6.88447 7.40990 8.46974 8.67490 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.003748 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.275802 B = 7469.848617 C = 7863.957363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.077 3.923 4 C -0.162 4.162 5 C -0.121 4.121 6 C 0.078 3.922 7 O -0.315 6.315 8 C 0.058 3.942 9 C 0.128 3.872 10 N -0.647 5.647 11 C 0.110 3.890 12 C 0.539 3.461 13 O -0.630 6.630 14 C -0.570 4.570 15 H 0.090 0.910 16 C 0.029 3.971 17 N -0.821 5.821 18 Si 0.994 3.006 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.252 1.252 22 C -0.181 4.181 23 C -0.123 4.123 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.274 0.726 37 H 0.132 0.868 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 -7.857 -9.538 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.032 3.968 4 C -0.180 4.180 5 C -0.139 4.139 6 C 0.032 3.968 7 O -0.229 6.229 8 C -0.019 4.019 9 C 0.004 3.996 10 N -0.383 5.383 11 C -0.033 4.033 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.606 4.606 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.451 5.451 18 Si 0.813 3.187 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.176 1.176 22 C -0.200 4.200 23 C -0.141 4.141 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.181 0.819 28 H 0.165 0.835 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.150 0.850 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.473 -8.215 -9.528 19.942 hybrid contribution 0.313 0.121 0.732 0.805 sum -15.160 -8.094 -8.796 19.306 Atomic orbital electron populations 1.23343 0.76544 1.05549 1.02273 1.86049 1.23388 1.26287 1.89332 1.19002 0.92235 0.85031 1.00490 1.21308 1.01328 0.90441 1.04950 1.20474 0.90873 0.99169 1.03404 1.19318 0.93209 0.84650 0.99585 1.86065 1.21388 1.26726 1.88764 1.23240 0.78145 0.99892 1.00621 1.21256 0.99827 0.90596 0.87939 1.47788 1.21322 1.57468 1.11687 1.21471 0.84216 0.95756 1.01906 1.18620 0.82621 0.80157 0.84127 1.90536 1.26686 1.49883 1.84599 1.21516 1.06899 1.36454 0.95768 0.89161 1.26976 0.93566 0.93990 1.04106 1.70180 1.09512 1.33769 1.31609 0.85134 0.78768 0.79447 0.75364 1.18077 1.19926 1.17573 1.21232 1.00556 0.91910 1.06269 1.20377 0.92222 0.97965 1.03564 0.91463 0.86358 0.91930 0.81924 0.83544 0.95174 0.89533 0.90635 0.88073 0.94660 0.91991 0.90497 0.91661 0.85038 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.40 10.50 -93.49 -0.98 -8.38 16 3 C 0.08 1.92 6.69 22.49 0.15 2.07 16 4 C -0.16 -3.60 9.03 22.35 0.20 -3.40 16 5 C -0.12 -3.15 9.98 22.35 0.22 -2.93 16 6 C 0.08 2.44 6.69 22.49 0.15 2.59 16 7 O -0.32 -10.90 9.70 -93.35 -0.91 -11.80 16 8 C 0.06 2.06 5.08 71.98 0.37 2.43 16 9 C 0.13 4.89 5.86 86.38 0.51 5.39 16 10 N -0.65 -29.80 2.84 -851.89 -2.42 -32.22 16 11 C 0.11 4.08 9.79 127.77 1.25 5.33 16 12 C 0.54 31.56 7.61 86.36 0.66 32.22 16 13 O -0.63 -42.02 14.60 -4.32 -0.06 -42.08 16 14 C -0.57 -32.66 8.74 24.83 0.22 -32.44 16 15 H 0.09 4.65 5.99 -2.91 -0.02 4.64 16 16 C 0.03 1.62 5.50 85.31 0.47 2.09 16 17 N -0.82 -50.71 11.83 21.84 0.26 -50.45 16 18 Si 0.99 41.38 29.56 68.60 2.03 43.41 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 22 C -0.18 -5.45 9.03 22.35 0.20 -5.24 16 23 C -0.12 -3.32 9.98 22.35 0.22 -3.10 16 24 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 25 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.68 7.65 -2.39 -0.02 0.67 16 27 H 0.16 2.46 6.29 -2.91 -0.02 2.44 16 28 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.03 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.09 2.52 7.66 -2.39 -0.02 2.50 16 31 H 0.08 3.16 7.42 -2.39 -0.02 3.14 16 32 H 0.10 3.08 7.89 -2.39 -0.02 3.06 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 2.36 6.09 -2.39 -0.01 2.35 16 35 H 0.08 2.29 7.89 -2.39 -0.02 2.27 16 36 H 0.27 15.35 8.29 -92.70 -0.77 14.59 16 37 H 0.13 3.91 6.29 -2.91 -0.02 3.89 16 38 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -78.48 323.34 4.72 -73.76 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.07 Total: 21.43 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.73 Total: 6.34 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.16 Total: -82.67 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -1.95 Total: -62.27 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -78.48 4.72 -73.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274016046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.291 kcal (2) G-P(sol) polarization free energy of solvation -78.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds