Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35905 * 116.99978 * 2 1 4 4 C 1.38730 * 120.05799 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05509 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94345 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47315 * 355.97829 * 7 6 5 9 9 C 1.53000 * 109.46753 * 115.97985 * 7 6 5 10 10 O 1.42900 * 109.47440 * 53.47392 * 9 7 6 11 11 N 1.46500 * 109.46839 * 235.97697 * 7 6 5 12 12 C 1.46504 * 119.99989 * 299.96620 * 11 7 6 13 13 C 1.34778 * 120.00095 * 119.97209 * 11 7 6 14 14 O 1.21689 * 119.99603 * 359.97438 * 13 11 7 15 15 C 1.46369 * 120.00404 * 179.97438 * 13 11 7 16 16 H 1.08008 * 119.99703 * 0.02562 * 15 13 11 17 17 C 1.40042 * 120.00271 * 179.97438 * 15 13 11 18 18 N 1.30674 * 120.00087 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00140 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47420 * 59.99869 * 19 17 15 21 21 H 1.48501 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47178 * 299.99912 * 19 17 15 23 23 C 1.38271 * 120.11097 * 0.02562 * 6 5 4 24 24 C 1.38141 * 120.05694 * 359.97438 * 23 6 5 25 25 H 1.08997 * 109.47681 * 299.99924 * 1 2 3 26 26 H 1.08998 * 109.47757 * 60.00430 * 1 2 3 27 27 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.02619 * 359.95182 * 4 3 2 29 29 H 1.08004 * 119.97121 * 179.72262 * 5 4 3 30 30 H 1.09008 * 109.46628 * 173.47154 * 9 7 6 31 31 H 1.08998 * 109.46962 * 293.46755 * 9 7 6 32 32 H 0.96704 * 113.99503 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46738 * 92.73591 * 12 11 7 34 34 H 1.08995 * 109.46899 * 212.73375 * 12 11 7 35 35 H 1.09001 * 109.47238 * 332.73668 * 12 11 7 36 36 H 0.96998 * 119.99897 * 180.02562 * 18 17 15 37 37 H 1.07996 * 119.97063 * 180.02562 * 23 6 5 38 38 H 1.07998 * 120.02817 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0643 4.8771 0.0690 9 6 3.6539 5.7589 -1.2999 10 8 2.2359 5.8110 -1.4692 11 7 3.5194 5.8053 1.1416 12 6 2.0977 6.1332 1.2744 13 6 4.3981 6.2275 2.0723 14 8 5.5789 5.9548 1.9622 15 6 3.9321 7.0140 3.2154 16 1 2.8840 7.2557 3.3133 17 6 4.8451 7.4522 4.1827 18 7 6.1129 7.1586 4.0651 19 14 4.2502 8.4553 5.6420 20 1 3.2598 7.6643 6.4157 21 1 5.4039 8.7924 6.5142 22 1 3.6140 9.7062 5.1564 23 6 1.9209 3.6048 -0.0011 24 6 1.2914 2.3752 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.0207 0.3801 -0.0002 29 1 5.1344 2.5751 0.0030 30 1 4.0515 6.7728 -1.2516 31 1 4.1015 5.2330 -2.1432 32 1 1.9524 6.2677 -2.2731 33 1 1.6051 5.3743 1.8821 34 1 1.9926 7.1067 1.7532 35 1 1.6378 6.1625 0.2866 36 1 6.7452 7.4618 4.7353 37 1 1.3340 4.5114 -0.0019 38 1 0.2128 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274749164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = -81.467864 kcal Electronic energy + Delta-G solvation = -22203.357463 eV Core-core repulsion = 18819.061837 eV Total energy + Delta-G solvation = -3384.295626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02302 -38.63696 -36.80103 -36.20824 -33.72327 -32.42744 -30.96736 -30.67409 -28.33996 -26.97384 -26.10679 -25.25937 -22.67605 -22.20495 -20.76732 -18.90062 -17.90052 -17.37415 -16.33694 -15.86470 -15.78580 -15.64235 -15.38513 -14.61525 -14.33482 -14.08517 -13.65553 -13.47249 -13.19998 -12.97084 -12.49319 -12.41180 -12.10953 -11.81643 -11.47532 -11.41166 -11.18015 -10.99918 -10.98786 -10.77447 -10.58293 -10.38914 -10.22587 -10.12789 -9.53040 -8.83152 -8.61589 -7.84310 -7.50849 -7.16383 -6.17418 -4.62331 1.70438 1.78922 3.16488 3.21412 3.23198 3.39573 4.01748 4.15001 4.50621 4.62592 4.70449 4.98590 5.11641 5.13965 5.20246 5.30562 5.40687 5.51230 5.71573 5.77922 5.80191 5.85896 5.95332 6.12346 6.18888 6.37939 6.48864 6.54918 6.66343 6.77881 6.82973 7.07899 7.14424 7.46768 7.61049 7.67732 7.83810 8.17481 8.39923 9.04126 9.45412 10.58940 10.77752 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.004831 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.552358 B = 5794.433719 C = 6125.262476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.113 3.887 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.113 4.113 7 C 0.188 3.812 8 H 0.110 0.890 9 C 0.073 3.927 10 O -0.560 6.560 11 N -0.632 5.632 12 C 0.086 3.914 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.540 4.540 16 H 0.071 0.929 17 C 0.087 3.913 18 N -0.767 5.767 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.051 4.051 24 C -0.218 4.218 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.365 0.635 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.268 0.732 37 H 0.145 0.855 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 -7.067 -10.209 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.178 4.178 5 C -0.091 4.091 6 C -0.115 4.115 7 C 0.083 3.917 8 H 0.128 0.872 9 C -0.006 4.006 10 O -0.366 6.366 11 N -0.369 5.369 12 C -0.058 4.058 13 C 0.363 3.637 14 O -0.464 6.464 15 C -0.577 4.577 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.069 4.069 24 C -0.236 4.236 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.212 0.788 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.728 -7.701 -9.600 15.688 hybrid contribution -0.645 0.862 0.310 1.121 sum -10.373 -6.839 -9.290 15.514 Atomic orbital electron populations 1.22967 0.78995 1.03306 1.01269 1.86019 1.20935 1.27545 1.89259 1.19012 0.92358 0.83841 0.97897 1.20279 0.91213 0.98312 1.08003 1.20931 0.99895 0.91072 0.97191 1.20192 0.94046 0.95278 1.01952 1.19622 0.99659 0.86788 0.85634 0.87192 1.22686 0.81060 0.99566 0.97270 1.86535 1.22631 1.80962 1.46471 1.47909 1.07781 1.56657 1.24513 1.21867 0.83144 0.99550 1.01222 1.18294 0.84432 0.79440 0.81582 1.90575 1.16901 1.61402 1.77531 1.20962 0.95100 1.35104 1.06520 0.91042 1.25733 0.94376 0.94809 0.98311 1.70012 1.02266 1.35497 1.31846 0.86459 0.78864 0.80460 0.81131 1.19289 1.20565 1.19270 1.21358 0.94521 0.97284 0.93754 1.21215 0.99463 0.92581 1.10382 0.92806 0.92916 0.88741 0.85810 0.85519 0.93010 0.93718 0.78836 0.95675 0.92068 0.90059 0.92100 0.83761 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.55 10.50 -19.44 -0.20 -4.75 16 3 C 0.11 1.77 6.69 -39.22 -0.26 1.51 16 4 C -0.16 -2.55 9.99 -39.43 -0.39 -2.94 16 5 C -0.07 -1.24 9.66 -39.61 -0.38 -1.62 16 6 C -0.11 -2.05 4.95 -104.60 -0.52 -2.57 16 7 C 0.19 3.71 2.94 -69.08 -0.20 3.51 16 8 H 0.11 2.41 6.63 -51.93 -0.34 2.07 16 9 C 0.07 1.13 6.78 37.16 0.25 1.38 16 10 O -0.56 -7.44 8.25 -35.23 -0.29 -7.73 16 11 N -0.63 -14.52 2.75 -176.93 -0.49 -15.01 16 12 C 0.09 1.68 7.91 59.85 0.47 2.15 16 13 C 0.56 15.93 7.61 -12.99 -0.10 15.83 16 14 O -0.58 -18.64 14.35 5.20 0.07 -18.57 16 15 C -0.54 -15.36 8.73 -35.64 -0.31 -15.67 16 16 H 0.07 1.87 6.06 -52.48 -0.32 1.56 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 18 N -0.77 -23.05 11.83 55.55 0.66 -22.39 16 19 Si 0.91 20.29 29.56 -169.99 -5.02 15.26 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.05 -0.85 7.29 -39.60 -0.29 -1.14 16 24 C -0.22 -3.29 9.04 -39.43 -0.36 -3.65 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.13 2.04 7.95 -52.48 -0.42 1.63 16 30 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.36 3.11 9.12 45.56 0.42 3.52 16 33 H 0.02 0.49 7.54 -51.93 -0.39 0.09 16 34 H 0.06 1.23 6.25 -51.93 -0.32 0.91 16 35 H 0.08 1.37 3.84 -51.93 -0.20 1.17 16 36 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 37 H 0.15 2.33 4.00 -52.49 -0.21 2.12 16 38 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -35.59 309.26 -5.55 -41.14 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.74 Total: 6.95 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.19 Total: 0.43 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.17 Total: -37.40 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.42 Total: -31.05 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.59 -5.55 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274749164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.328 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds