Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35905 * 116.99978 * 2 1 4 4 C 1.38730 * 120.05799 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05509 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94345 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47315 * 355.97829 * 7 6 5 9 9 C 1.53000 * 109.46753 * 115.97985 * 7 6 5 10 10 O 1.42900 * 109.47440 * 53.47392 * 9 7 6 11 11 N 1.46500 * 109.46839 * 235.97697 * 7 6 5 12 12 C 1.46504 * 119.99989 * 299.96620 * 11 7 6 13 13 C 1.34778 * 120.00095 * 119.97209 * 11 7 6 14 14 O 1.21689 * 119.99603 * 359.97438 * 13 11 7 15 15 C 1.46369 * 120.00404 * 179.97438 * 13 11 7 16 16 H 1.08008 * 119.99703 * 0.02562 * 15 13 11 17 17 C 1.40042 * 120.00271 * 179.97438 * 15 13 11 18 18 N 1.30674 * 120.00087 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00140 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47420 * 59.99869 * 19 17 15 21 21 H 1.48501 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47178 * 299.99912 * 19 17 15 23 23 C 1.38271 * 120.11097 * 0.02562 * 6 5 4 24 24 C 1.38141 * 120.05694 * 359.97438 * 23 6 5 25 25 H 1.08997 * 109.47681 * 299.99924 * 1 2 3 26 26 H 1.08998 * 109.47757 * 60.00430 * 1 2 3 27 27 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.02619 * 359.95182 * 4 3 2 29 29 H 1.08004 * 119.97121 * 179.72262 * 5 4 3 30 30 H 1.09008 * 109.46628 * 173.47154 * 9 7 6 31 31 H 1.08998 * 109.46962 * 293.46755 * 9 7 6 32 32 H 0.96704 * 113.99503 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46738 * 92.73591 * 12 11 7 34 34 H 1.08995 * 109.46899 * 212.73375 * 12 11 7 35 35 H 1.09001 * 109.47238 * 332.73668 * 12 11 7 36 36 H 0.96998 * 119.99897 * 180.02562 * 18 17 15 37 37 H 1.07996 * 119.97063 * 180.02562 * 23 6 5 38 38 H 1.07998 * 120.02817 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0643 4.8771 0.0690 9 6 3.6539 5.7589 -1.2999 10 8 2.2359 5.8110 -1.4692 11 7 3.5194 5.8053 1.1416 12 6 2.0977 6.1332 1.2744 13 6 4.3981 6.2275 2.0723 14 8 5.5789 5.9548 1.9622 15 6 3.9321 7.0140 3.2154 16 1 2.8840 7.2557 3.3133 17 6 4.8451 7.4522 4.1827 18 7 6.1129 7.1586 4.0651 19 14 4.2502 8.4553 5.6420 20 1 3.2598 7.6643 6.4157 21 1 5.4039 8.7924 6.5142 22 1 3.6140 9.7062 5.1564 23 6 1.9209 3.6048 -0.0011 24 6 1.2914 2.3752 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.0207 0.3801 -0.0002 29 1 5.1344 2.5751 0.0030 30 1 4.0515 6.7728 -1.2516 31 1 4.1015 5.2330 -2.1432 32 1 1.9524 6.2677 -2.2731 33 1 1.6051 5.3743 1.8821 34 1 1.9926 7.1067 1.7532 35 1 1.6378 6.1625 0.2866 36 1 6.7452 7.4618 4.7353 37 1 1.3340 4.5114 -0.0019 38 1 0.2128 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274749164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = -108.134972 kcal Electronic energy + Delta-G solvation = -22204.513836 eV Core-core repulsion = 18819.061837 eV Total energy + Delta-G solvation = -3385.451999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27575 -40.09606 -38.45534 -37.43912 -35.46006 -34.58153 -32.39296 -31.96375 -29.58649 -28.16676 -27.98089 -26.85469 -24.08096 -23.48025 -22.31319 -20.61265 -19.03318 -18.73921 -18.18420 -17.51655 -17.16182 -16.89103 -16.60675 -16.16650 -15.88337 -15.64160 -14.96797 -14.71334 -14.67570 -14.44676 -14.14474 -13.62880 -13.51824 -13.29675 -13.01340 -12.93913 -12.74607 -12.70118 -12.46048 -12.30345 -12.09067 -12.01502 -11.78616 -11.55324 -10.91003 -10.78563 -9.87157 -9.75348 -9.04387 -8.99358 -8.26852 -6.82815 0.43529 0.51531 1.38966 1.42480 1.53799 2.24164 2.40832 2.46301 2.71188 3.07501 3.40265 3.65375 3.84088 3.96366 4.02018 4.17982 4.36191 4.42633 4.49052 4.52547 4.61543 4.61701 4.73395 4.75507 4.82918 4.86080 5.01154 5.18534 5.22811 5.35696 5.42768 5.49160 5.75859 5.82902 5.86974 6.15399 6.45606 6.50061 6.88716 7.00197 7.44526 8.48441 8.68511 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.004831 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.552358 B = 5794.433719 C = 6125.262476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.168 4.168 5 C -0.087 4.087 6 C -0.133 4.133 7 C 0.181 3.819 8 H 0.073 0.927 9 C 0.090 3.910 10 O -0.563 6.563 11 N -0.632 5.632 12 C 0.089 3.911 13 C 0.538 3.462 14 O -0.632 6.632 15 C -0.569 4.569 16 H 0.089 0.911 17 C 0.029 3.971 18 N -0.821 5.821 19 Si 0.994 3.006 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.252 1.252 23 C -0.053 4.053 24 C -0.214 4.214 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.392 0.608 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.151 0.849 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.823 -7.208 -10.414 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.186 4.186 5 C -0.106 4.106 6 C -0.135 4.135 7 C 0.077 3.923 8 H 0.092 0.908 9 C 0.011 3.989 10 O -0.372 6.372 11 N -0.367 5.367 12 C -0.054 4.054 13 C 0.344 3.656 14 O -0.519 6.519 15 C -0.605 4.605 16 H 0.107 0.893 17 C -0.186 4.186 18 N -0.450 5.450 19 Si 0.813 3.187 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.176 1.176 23 C -0.071 4.071 24 C -0.232 4.232 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.242 0.758 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.131 0.869 36 H 0.083 0.917 37 H 0.169 0.831 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.939 -7.856 -9.870 18.071 hybrid contribution 0.233 0.766 0.262 0.842 sum -12.706 -7.090 -9.608 17.436 Atomic orbital electron populations 1.23332 0.76531 1.05511 1.02210 1.86017 1.23463 1.26624 1.88841 1.19133 0.92334 0.84785 0.96808 1.20452 0.92114 0.98216 1.07862 1.21002 0.99927 0.91685 0.97981 1.20088 0.94965 0.94317 1.04098 1.19724 0.97910 0.88264 0.86408 0.90844 1.22291 0.82519 0.98437 0.95683 1.86393 1.20848 1.81476 1.48506 1.47752 1.08460 1.56151 1.24304 1.22000 0.81221 0.99015 1.03133 1.18680 0.84492 0.79641 0.82811 1.90524 1.19146 1.63284 1.78992 1.21480 0.96241 1.35617 1.07153 0.89322 1.26970 0.94179 0.95675 1.01739 1.70189 1.04145 1.37187 1.33521 0.85133 0.78515 0.78756 0.76290 1.18099 1.19875 1.17588 1.21406 0.93669 0.98281 0.93775 1.21490 1.01002 0.91637 1.09088 0.92207 0.91495 0.86127 0.84494 0.86019 0.94215 0.91256 0.75754 0.95490 0.92854 0.86909 0.91678 0.83150 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.57 10.50 -92.48 -0.97 -9.54 16 3 C 0.11 3.36 6.69 22.51 0.15 3.51 16 4 C -0.17 -5.28 9.99 22.36 0.22 -5.06 16 5 C -0.09 -3.07 9.66 22.25 0.22 -2.85 16 6 C -0.13 -4.85 4.95 -19.85 -0.10 -4.94 16 7 C 0.18 7.37 2.94 44.25 0.13 7.50 16 8 H 0.07 3.48 6.63 -2.39 -0.02 3.46 16 9 C 0.09 2.72 6.78 71.98 0.49 3.21 16 10 O -0.56 -13.52 8.25 -148.98 -1.23 -14.75 16 11 N -0.63 -29.69 2.75 -831.90 -2.29 -31.98 16 12 C 0.09 3.39 7.91 127.77 1.01 4.40 16 13 C 0.54 32.06 7.61 86.36 0.66 32.72 16 14 O -0.63 -43.01 14.35 -4.31 -0.06 -43.07 16 15 C -0.57 -32.96 8.73 24.83 0.22 -32.74 16 16 H 0.09 4.64 6.06 -2.91 -0.02 4.63 16 17 C 0.03 1.67 5.50 85.30 0.47 2.14 16 18 N -0.82 -51.07 11.83 21.83 0.26 -50.81 16 19 Si 0.99 41.68 29.56 68.60 2.03 43.71 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 C -0.05 -1.69 7.29 22.25 0.16 -1.53 16 24 C -0.21 -5.91 9.04 22.37 0.20 -5.70 16 25 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 26 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 27 H 0.12 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.12 4.22 7.95 -2.91 -0.02 4.20 16 30 H 0.04 1.29 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.39 5.30 9.12 -74.05 -0.68 4.63 16 33 H 0.03 1.01 7.54 -2.39 -0.02 0.99 16 34 H 0.05 2.10 6.25 -2.39 -0.01 2.09 16 35 H 0.11 3.56 3.84 -2.39 -0.01 3.55 16 36 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 37 H 0.15 4.47 4.00 -2.91 -0.01 4.46 16 38 H 0.15 3.16 6.30 -2.91 -0.02 3.14 16 Total: -1.00 -80.88 309.26 3.10 -77.77 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.43 Total: 26.61 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.94 Total: 2.06 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.03 Total: -82.79 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -2.26 Total: -67.36 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -80.88 3.10 -77.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274749164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.360 kcal (2) G-P(sol) polarization free energy of solvation -80.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds