Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 117.00225 * 2 1 4 4 C 1.38729 * 120.05629 * 180.02562 * 3 2 1 5 5 C 1.38154 * 119.94675 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05080 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94154 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47391 * 7.23629 * 7 6 5 9 9 C 1.53002 * 109.47276 * 247.23576 * 7 6 5 10 10 O 1.42901 * 109.46857 * 306.45373 * 9 7 6 11 11 N 1.46507 * 109.47215 * 127.23737 * 7 6 5 12 12 C 1.46496 * 119.99913 * 60.45424 * 11 7 6 13 13 C 1.34775 * 119.99921 * 240.18594 * 11 7 6 14 14 O 1.21694 * 119.99952 * 359.97438 * 13 11 7 15 15 C 1.46374 * 120.00427 * 179.97438 * 13 11 7 16 16 H 1.08002 * 119.99315 * 359.97438 * 15 13 11 17 17 C 1.40047 * 120.00715 * 179.97438 * 15 13 11 18 18 N 1.30671 * 119.99280 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00291 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47264 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47008 * 120.00163 * 19 17 15 22 22 H 1.48495 * 109.47654 * 240.00266 * 19 17 15 23 23 C 1.38263 * 120.11579 * 0.26923 * 6 5 4 24 24 C 1.38151 * 120.05525 * 359.45494 * 23 6 5 25 25 H 1.09005 * 109.47077 * 59.99974 * 1 2 3 26 26 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47161 * 300.00903 * 1 2 3 28 28 H 1.08002 * 120.03107 * 359.94904 * 4 3 2 29 29 H 1.07994 * 119.97189 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46913 * 66.45525 * 9 7 6 31 31 H 1.08998 * 109.47136 * 186.45825 * 9 7 6 32 32 H 0.96700 * 114.00192 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47477 * 273.81034 * 12 11 7 34 34 H 1.08992 * 109.47119 * 33.81392 * 12 11 7 35 35 H 1.09005 * 109.46622 * 153.81138 * 12 11 7 36 36 H 0.97008 * 119.99776 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.97470 * 179.70686 * 23 6 5 38 38 H 1.08001 * 120.03094 * 180.26854 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3021 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0016 8 1 5.0596 4.8793 -0.1306 9 6 3.7200 5.7265 1.3283 10 8 2.3121 5.7750 1.5685 11 7 3.4637 5.8328 -1.1017 12 6 2.0391 6.1708 -1.1502 13 6 4.2946 6.2756 -2.0660 14 8 5.4790 5.9993 -2.0228 15 6 3.7726 7.0888 -3.1654 16 1 2.7214 7.3336 -3.2040 17 6 4.6360 7.5494 -4.1672 18 7 5.9077 7.2526 -4.1207 19 14 3.9696 8.5865 -5.5706 20 1 2.5078 8.7791 -5.3930 21 1 4.6458 9.9087 -5.5734 22 1 4.2252 7.8970 -6.8606 23 6 1.9213 3.6048 0.0040 24 6 1.2916 2.3751 -0.0012 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 4.0209 0.3798 -0.0001 29 1 5.1346 2.5749 -0.0019 30 1 4.2077 5.1796 2.1351 31 1 4.1164 6.7410 1.2855 32 1 2.0692 6.2118 2.3964 33 1 1.4922 5.3694 -1.6470 34 1 1.6603 6.2946 -0.1358 35 1 1.9049 7.0999 -1.7042 36 1 6.5058 7.5713 -4.8148 37 1 1.3344 4.5114 0.0084 38 1 0.2130 2.3202 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274749167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -80.427652 kcal Electronic energy + Delta-G solvation = -22204.322146 eV Core-core repulsion = 18820.071627 eV Total energy + Delta-G solvation = -3384.250519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02173 -38.63626 -36.80103 -36.20410 -33.72922 -32.43661 -30.98934 -30.66127 -28.33910 -26.97893 -26.11302 -25.27666 -22.66451 -22.20541 -20.76280 -18.90472 -17.89198 -17.36757 -16.33147 -15.87929 -15.78617 -15.64017 -15.39841 -14.59922 -14.39763 -14.07384 -13.64700 -13.46995 -13.16599 -12.96700 -12.47389 -12.40824 -12.10475 -11.82592 -11.49028 -11.43739 -11.16130 -11.04682 -10.99931 -10.76507 -10.58907 -10.39031 -10.19328 -10.08084 -9.53313 -8.85088 -8.61265 -7.82814 -7.51001 -7.16397 -6.18246 -4.62794 1.70503 1.79383 3.13137 3.21550 3.25820 3.39760 4.02124 4.14669 4.51143 4.63109 4.70109 4.98792 5.11934 5.14168 5.20534 5.30326 5.40953 5.52289 5.71481 5.77615 5.79849 5.85247 5.95231 6.11217 6.20766 6.35293 6.48432 6.55782 6.64707 6.78093 6.82616 7.07310 7.14295 7.47079 7.61138 7.67209 7.84587 8.17638 8.39323 9.03861 9.45012 10.58303 10.77166 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.004842 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.303617 B = 5781.301342 C = 6118.522169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.113 3.887 4 C -0.159 4.159 5 C -0.073 4.073 6 C -0.112 4.112 7 C 0.189 3.811 8 H 0.110 0.890 9 C 0.073 3.927 10 O -0.560 6.560 11 N -0.632 5.632 12 C 0.083 3.917 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.540 4.540 16 H 0.073 0.927 17 C 0.087 3.913 18 N -0.767 5.767 19 Si 0.906 3.094 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.051 4.051 24 C -0.217 4.217 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.365 0.635 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.267 0.733 37 H 0.144 0.856 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 -7.244 10.426 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.178 4.178 5 C -0.092 4.092 6 C -0.114 4.114 7 C 0.083 3.917 8 H 0.128 0.872 9 C -0.006 4.006 10 O -0.365 6.365 11 N -0.368 5.368 12 C -0.061 4.061 13 C 0.362 3.638 14 O -0.464 6.464 15 C -0.577 4.577 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.069 4.069 24 C -0.236 4.236 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.211 0.789 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.162 0.838 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.266 -7.867 9.766 15.592 hybrid contribution -0.633 0.857 -0.258 1.096 sum -9.899 -7.010 9.507 15.412 Atomic orbital electron populations 1.22969 0.78989 1.03302 1.01277 1.86017 1.20938 1.27544 1.89265 1.19005 0.92356 0.83838 0.97928 1.20276 0.91213 0.98296 1.08017 1.20918 0.99853 0.91078 0.97342 1.20184 0.94064 0.95255 1.01860 1.19622 0.99445 0.86641 0.85991 0.87190 1.22682 0.81409 0.99556 0.96929 1.86555 1.23595 1.82374 1.44008 1.47897 1.08379 1.54935 1.25626 1.21918 0.82946 0.99536 1.01670 1.18317 0.84876 0.79627 0.80952 1.90578 1.16390 1.61930 1.77477 1.21043 0.95692 1.33671 1.07296 0.90871 1.25741 0.94363 0.94977 0.98182 1.70037 1.03577 1.35538 1.30439 0.86344 0.79905 0.79708 0.80991 1.18749 1.20178 1.20172 1.21355 0.94538 0.97295 0.93724 1.21215 0.99469 0.92579 1.10348 0.92797 0.88739 0.92920 0.85815 0.85549 0.93739 0.93032 0.78853 0.95604 0.90414 0.91516 0.92213 0.83809 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.56 10.50 -19.42 -0.20 -4.76 16 3 C 0.11 1.77 6.69 -39.22 -0.26 1.51 16 4 C -0.16 -2.54 9.99 -39.43 -0.39 -2.94 16 5 C -0.07 -1.25 9.66 -39.60 -0.38 -1.63 16 6 C -0.11 -2.04 4.94 -104.61 -0.52 -2.55 16 7 C 0.19 3.72 2.94 -69.08 -0.20 3.52 16 8 H 0.11 2.42 6.64 -51.93 -0.35 2.07 16 9 C 0.07 1.13 6.77 37.16 0.25 1.38 16 10 O -0.56 -7.49 8.33 -35.23 -0.29 -7.79 16 11 N -0.63 -14.50 2.75 -176.93 -0.49 -14.98 16 12 C 0.08 1.61 8.05 59.84 0.48 2.10 16 13 C 0.56 15.90 7.61 -12.99 -0.10 15.80 16 14 O -0.58 -18.63 14.35 5.19 0.07 -18.55 16 15 C -0.54 -15.32 8.75 -35.63 -0.31 -15.63 16 16 H 0.07 1.92 5.92 -52.49 -0.31 1.61 16 17 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 18 N -0.77 -23.01 11.83 55.55 0.66 -22.35 16 19 Si 0.91 20.24 29.56 -169.99 -5.02 15.21 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.05 -0.86 7.18 -39.60 -0.28 -1.14 16 24 C -0.22 -3.31 9.04 -39.43 -0.36 -3.67 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.13 2.01 7.96 -52.49 -0.42 1.59 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.36 3.14 9.12 45.56 0.42 3.56 16 33 H 0.03 0.49 6.88 -51.93 -0.36 0.13 16 34 H 0.08 1.32 4.31 -51.93 -0.22 1.09 16 35 H 0.07 1.35 5.88 -51.93 -0.31 1.04 16 36 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 37 H 0.14 2.35 3.95 -52.49 -0.21 2.14 16 38 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -35.61 308.63 -5.51 -41.12 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.70 Total: 7.09 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.18 Total: 0.37 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.17 Total: -37.34 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.42 Total: -31.10 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.61 -5.51 -41.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274749167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.309 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds