Wall clock time and date at job start Wed Apr 15 2020 11:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 117.00225 * 2 1 4 4 C 1.38729 * 120.05629 * 180.02562 * 3 2 1 5 5 C 1.38154 * 119.94675 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05080 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94154 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47391 * 7.23629 * 7 6 5 9 9 C 1.53002 * 109.47276 * 247.23576 * 7 6 5 10 10 O 1.42901 * 109.46857 * 306.45373 * 9 7 6 11 11 N 1.46507 * 109.47215 * 127.23737 * 7 6 5 12 12 C 1.46496 * 119.99913 * 60.45424 * 11 7 6 13 13 C 1.34775 * 119.99921 * 240.18594 * 11 7 6 14 14 O 1.21694 * 119.99952 * 359.97438 * 13 11 7 15 15 C 1.46374 * 120.00427 * 179.97438 * 13 11 7 16 16 H 1.08002 * 119.99315 * 359.97438 * 15 13 11 17 17 C 1.40047 * 120.00715 * 179.97438 * 15 13 11 18 18 N 1.30671 * 119.99280 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 120.00291 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47264 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47008 * 120.00163 * 19 17 15 22 22 H 1.48495 * 109.47654 * 240.00266 * 19 17 15 23 23 C 1.38263 * 120.11579 * 0.26923 * 6 5 4 24 24 C 1.38151 * 120.05525 * 359.45494 * 23 6 5 25 25 H 1.09005 * 109.47077 * 59.99974 * 1 2 3 26 26 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47161 * 300.00903 * 1 2 3 28 28 H 1.08002 * 120.03107 * 359.94904 * 4 3 2 29 29 H 1.07994 * 119.97189 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46913 * 66.45525 * 9 7 6 31 31 H 1.08998 * 109.47136 * 186.45825 * 9 7 6 32 32 H 0.96700 * 114.00192 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47477 * 273.81034 * 12 11 7 34 34 H 1.08992 * 109.47119 * 33.81392 * 12 11 7 35 35 H 1.09005 * 109.46622 * 153.81138 * 12 11 7 36 36 H 0.97008 * 119.99776 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.97470 * 179.70686 * 23 6 5 38 38 H 1.08001 * 120.03094 * 180.26854 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3021 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0016 8 1 5.0596 4.8793 -0.1306 9 6 3.7200 5.7265 1.3283 10 8 2.3121 5.7750 1.5685 11 7 3.4637 5.8328 -1.1017 12 6 2.0391 6.1708 -1.1502 13 6 4.2946 6.2756 -2.0660 14 8 5.4790 5.9993 -2.0228 15 6 3.7726 7.0888 -3.1654 16 1 2.7214 7.3336 -3.2040 17 6 4.6360 7.5494 -4.1672 18 7 5.9077 7.2526 -4.1207 19 14 3.9696 8.5865 -5.5706 20 1 2.5078 8.7791 -5.3930 21 1 4.6458 9.9087 -5.5734 22 1 4.2252 7.8970 -6.8606 23 6 1.9213 3.6048 0.0040 24 6 1.2916 2.3751 -0.0012 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 4.0209 0.3798 -0.0001 29 1 5.1346 2.5749 -0.0019 30 1 4.2077 5.1796 2.1351 31 1 4.1164 6.7410 1.2855 32 1 2.0692 6.2118 2.3964 33 1 1.4922 5.3694 -1.6470 34 1 1.6603 6.2946 -0.1358 35 1 1.9049 7.0999 -1.7042 36 1 6.5058 7.5713 -4.8148 37 1 1.3344 4.5114 0.0084 38 1 0.2130 2.3202 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274749167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:59 Heat of formation + Delta-G solvation = -107.123257 kcal Electronic energy + Delta-G solvation = -22205.479754 eV Core-core repulsion = 18820.071627 eV Total energy + Delta-G solvation = -3385.408128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27655 -40.09751 -38.44997 -37.43982 -35.46262 -34.58583 -32.40947 -31.95857 -29.58966 -28.16701 -27.98868 -26.86611 -24.07207 -23.48099 -22.30813 -20.61374 -19.02813 -18.73766 -18.17965 -17.53481 -17.16136 -16.90124 -16.60719 -16.14654 -15.89195 -15.66605 -14.96929 -14.70183 -14.66077 -14.43374 -14.14695 -13.62764 -13.53096 -13.26752 -13.00715 -12.93631 -12.80146 -12.71566 -12.48418 -12.28416 -12.04507 -11.97403 -11.78020 -11.55235 -10.93839 -10.79234 -9.87031 -9.74104 -9.02440 -8.99905 -8.27258 -6.82621 0.43668 0.51773 1.39078 1.39485 1.57057 2.24058 2.40813 2.46319 2.71656 3.06549 3.41784 3.65888 3.84796 3.95907 4.01832 4.18806 4.36343 4.42320 4.48783 4.52878 4.59437 4.61910 4.74072 4.76113 4.81036 4.84694 5.01525 5.18730 5.22766 5.35943 5.43477 5.48986 5.75871 5.81971 5.86785 6.16324 6.45470 6.50035 6.89054 7.00144 7.44672 8.48442 8.68603 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.004842 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.303617 B = 5781.301342 C = 6118.522169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.114 3.886 4 C -0.167 4.167 5 C -0.087 4.087 6 C -0.132 4.132 7 C 0.182 3.818 8 H 0.074 0.926 9 C 0.089 3.911 10 O -0.563 6.563 11 N -0.631 5.631 12 C 0.086 3.914 13 C 0.538 3.462 14 O -0.632 6.632 15 C -0.568 4.568 16 H 0.090 0.910 17 C 0.029 3.971 18 N -0.821 5.821 19 Si 0.994 3.006 20 H -0.246 1.246 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.055 4.055 24 C -0.214 4.214 25 H 0.059 0.941 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.391 0.609 33 H 0.031 0.969 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.273 0.727 37 H 0.150 0.850 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.254 -7.423 10.738 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.069 3.931 4 C -0.186 4.186 5 C -0.106 4.106 6 C -0.134 4.134 7 C 0.077 3.923 8 H 0.092 0.908 9 C 0.010 3.990 10 O -0.372 6.372 11 N -0.366 5.366 12 C -0.057 4.057 13 C 0.344 3.656 14 O -0.519 6.519 15 C -0.604 4.604 16 H 0.108 0.892 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.814 3.186 20 H -0.169 1.169 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.073 4.073 24 C -0.233 4.233 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.242 0.758 33 H 0.049 0.951 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.167 0.833 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.408 -8.061 10.144 17.940 hybrid contribution 0.233 0.771 -0.244 0.841 sum -12.175 -7.290 9.900 17.303 Atomic orbital electron populations 1.23331 0.76548 1.05507 1.02187 1.86016 1.23445 1.26619 1.88850 1.19130 0.92366 0.84751 0.96854 1.20460 0.92074 0.98250 1.07813 1.21004 0.99984 0.91607 0.98015 1.20085 0.94951 0.94355 1.03997 1.19720 0.97597 0.87999 0.86969 0.90823 1.22293 0.82873 0.98555 0.95233 1.86421 1.21839 1.82823 1.46091 1.47738 1.09195 1.54477 1.25237 1.22048 0.80945 0.99120 1.03542 1.18701 0.84836 0.79860 0.82233 1.90526 1.18620 1.63808 1.78994 1.21552 0.96793 1.34159 1.07926 0.89164 1.26977 0.94355 0.96005 1.01271 1.70206 1.05583 1.37264 1.32033 0.85023 0.79871 0.77454 0.76291 1.16932 1.19193 1.19548 1.21400 0.93751 0.98263 0.93855 1.21484 1.00981 0.91668 1.09124 0.92235 0.86103 0.91530 0.84423 0.85828 0.91293 0.94206 0.75807 0.95059 0.87406 0.92460 0.91703 0.83305 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.59 10.50 -92.41 -0.97 -9.56 16 3 C 0.11 3.36 6.69 22.51 0.15 3.51 16 4 C -0.17 -5.24 9.99 22.37 0.22 -5.02 16 5 C -0.09 -3.05 9.66 22.26 0.22 -2.83 16 6 C -0.13 -4.83 4.94 -19.85 -0.10 -4.92 16 7 C 0.18 7.38 2.94 44.24 0.13 7.51 16 8 H 0.07 3.49 6.64 -2.39 -0.02 3.47 16 9 C 0.09 2.72 6.77 71.98 0.49 3.21 16 10 O -0.56 -13.68 8.33 -148.98 -1.24 -14.93 16 11 N -0.63 -29.61 2.75 -831.89 -2.29 -31.90 16 12 C 0.09 3.27 8.05 127.77 1.03 4.30 16 13 C 0.54 31.99 7.61 86.36 0.66 32.65 16 14 O -0.63 -42.97 14.35 -4.33 -0.06 -43.03 16 15 C -0.57 -32.81 8.75 24.83 0.22 -32.60 16 16 H 0.09 4.72 5.92 -2.91 -0.02 4.70 16 17 C 0.03 1.63 5.50 85.30 0.47 2.10 16 18 N -0.82 -51.01 11.83 21.84 0.26 -50.76 16 19 Si 0.99 41.61 29.56 68.60 2.03 43.64 16 20 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.05 -1.75 7.18 22.25 0.16 -1.59 16 24 C -0.21 -5.98 9.04 22.37 0.20 -5.78 16 25 H 0.06 0.90 7.66 -2.38 -0.02 0.88 16 26 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 28 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 29 H 0.12 4.20 7.96 -2.91 -0.02 4.18 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.39 5.42 9.12 -74.06 -0.68 4.75 16 33 H 0.03 1.15 6.88 -2.39 -0.02 1.14 16 34 H 0.11 3.43 4.31 -2.39 -0.01 3.42 16 35 H 0.06 2.27 5.88 -2.38 -0.01 2.26 16 36 H 0.27 15.34 8.29 -92.70 -0.77 14.57 16 37 H 0.15 4.51 3.95 -2.91 -0.01 4.50 16 38 H 0.15 3.20 6.30 -2.91 -0.02 3.19 16 Total: -1.00 -80.78 308.63 3.11 -77.67 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.43 Total: 26.93 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.96 Total: 1.94 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.03 Total: -82.66 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -2.27 Total: -67.52 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -80.78 3.11 -77.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274749167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.455 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds