Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 117.00215 * 2 1 4 4 C 1.38757 * 120.05076 * 359.72762 * 3 2 1 5 5 C 1.38133 * 119.93677 * 179.70201 * 4 3 2 6 6 C 1.38283 * 120.05847 * 0.58818 * 5 4 3 7 7 C 1.38248 * 120.10940 * 359.68377 * 6 5 4 8 8 C 1.50697 * 119.96892 * 180.02562 * 7 6 5 9 9 O 1.42909 * 109.47014 * 269.97529 * 8 7 6 10 10 C 1.42902 * 113.99627 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46873 * 180.02562 * 10 9 8 12 12 O 1.21295 * 120.00040 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00307 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99509 * 359.97438 * 13 11 10 15 15 C 1.37088 * 120.00252 * 180.02562 * 13 11 10 16 16 H 1.07998 * 120.00400 * 24.39114 * 15 13 11 17 17 C 1.38948 * 120.00044 * 204.38899 * 15 13 11 18 18 N 1.31409 * 120.00091 * 12.66330 * 17 15 13 19 19 Si 1.86799 * 120.00253 * 192.65731 * 17 15 13 20 20 H 1.48498 * 109.47065 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46944 * 120.00397 * 19 17 15 22 22 H 1.48503 * 109.47526 * 240.00443 * 19 17 15 23 23 C 1.38169 * 120.05821 * 0.02562 * 7 6 5 24 24 H 1.09001 * 109.47253 * 60.00080 * 1 2 3 25 25 H 1.09007 * 109.47518 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47555 * 300.00209 * 1 2 3 27 27 H 1.07993 * 120.03302 * 359.97195 * 4 3 2 28 28 H 1.08005 * 119.96671 * 180.29759 * 5 4 3 29 29 H 1.07995 * 119.94569 * 179.70480 * 6 5 4 30 30 H 1.08995 * 109.47666 * 29.97529 * 8 7 6 31 31 H 1.08999 * 109.47056 * 149.98262 * 8 7 6 32 32 H 1.08995 * 109.47520 * 300.00206 * 10 9 8 33 33 H 1.08999 * 109.46880 * 60.00611 * 10 9 8 34 34 H 1.09001 * 109.47471 * 85.87108 * 14 13 11 35 35 H 1.09007 * 109.47287 * 205.86868 * 14 13 11 36 36 H 1.08998 * 109.47468 * 325.86628 * 14 13 11 37 37 H 0.97004 * 120.00354 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.02848 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0057 5 6 1.9209 3.6048 0.0005 6 6 3.3019 3.6758 0.0002 7 6 4.0560 2.5171 0.0002 8 6 5.5607 2.5981 0.0004 9 8 6.0366 2.6233 -1.3470 10 6 7.4591 2.7005 -1.4595 11 6 7.8473 2.7215 -2.9155 12 8 6.9901 2.6754 -3.7725 13 7 9.1469 2.7915 -3.2656 14 6 10.1821 2.8478 -2.2306 15 6 9.5000 2.8111 -4.5901 16 1 8.7966 3.1605 -5.3314 17 6 10.7629 2.3816 -4.9788 18 7 11.5254 1.7297 -4.1300 19 14 11.3769 2.7305 -6.7082 20 1 10.3362 3.4744 -7.4623 21 1 12.6155 3.5469 -6.6383 22 1 11.6676 1.4483 -7.3985 23 6 3.4311 1.2847 0.0000 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2128 2.3203 -0.0106 28 1 1.3340 4.5114 0.0009 29 1 3.7922 4.6380 0.0002 30 1 5.8757 3.5065 0.5139 31 1 5.9714 1.7291 0.5144 32 1 7.8129 3.6112 -0.9764 33 1 7.9094 1.8339 -0.9756 34 1 10.4420 1.8354 -1.9211 35 1 11.0672 3.3444 -2.6284 36 1 9.8078 3.4053 -1.3721 37 1 12.4069 1.4294 -4.4015 38 1 4.0206 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522273216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = -77.041029 kcal Electronic energy + Delta-G solvation = -20856.325589 eV Core-core repulsion = 17472.221924 eV Total energy + Delta-G solvation = -3384.103664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22714 -38.69342 -37.85513 -36.59136 -34.54259 -31.92016 -31.57793 -30.49749 -27.99090 -27.44660 -26.15656 -25.39662 -23.87495 -22.61377 -21.20387 -19.16045 -17.97345 -16.86126 -16.48684 -16.39724 -16.11649 -15.87960 -15.53203 -15.50429 -14.77403 -14.32340 -13.98851 -13.89118 -13.47367 -13.39080 -12.79945 -12.60328 -12.13703 -12.08984 -11.71286 -11.51723 -11.34106 -11.29648 -11.21968 -11.11982 -10.89026 -10.78464 -10.29684 -10.25874 -9.33675 -8.99724 -8.98449 -8.31029 -8.25068 -7.63933 -6.30366 -3.86445 1.17633 1.40384 3.10869 3.17454 3.27505 3.34484 3.52487 3.90392 4.03279 4.30324 4.66385 4.73083 4.89449 4.93016 4.97670 5.11791 5.14937 5.23099 5.24944 5.32777 5.37398 5.51223 5.63229 5.67129 5.79731 5.92342 5.96577 6.20128 6.31589 6.34428 6.55967 6.66478 6.83209 7.17963 7.28767 7.41561 7.59570 8.17873 8.52742 9.22210 9.42798 10.00855 10.75041 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.003012 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.874729 B = 9293.751264 C = 9514.025192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.121 3.879 4 C -0.206 4.206 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.043 4.043 8 C 0.097 3.903 9 O -0.353 6.353 10 C 0.054 3.946 11 C 0.450 3.550 12 O -0.568 6.568 13 N -0.448 5.448 14 C 0.110 3.890 15 C -0.303 4.303 16 H 0.099 0.901 17 C 0.029 3.971 18 N -0.884 5.884 19 Si 0.927 3.073 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.127 4.127 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 1.113 13.428 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.076 3.924 4 C -0.224 4.224 5 C -0.103 4.103 6 C -0.151 4.151 7 C -0.043 4.043 8 C 0.021 3.979 9 O -0.271 6.271 10 C -0.026 4.026 11 C 0.237 3.763 12 O -0.450 6.450 13 N -0.170 5.170 14 C -0.034 4.034 15 C -0.431 4.431 16 H 0.116 0.884 17 C -0.174 4.174 18 N -0.524 5.524 19 Si 0.754 3.246 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.144 0.808 12.829 19.864 hybrid contribution 0.476 0.174 -0.455 0.681 sum -14.668 0.982 12.375 19.216 Atomic orbital electron populations 1.23033 0.78586 1.03830 1.01240 1.86078 1.21217 1.26963 1.88876 1.18955 0.92209 0.84156 0.97099 1.21223 0.99853 0.92472 1.08879 1.20896 0.94473 0.96970 0.98009 1.20998 0.93706 0.98160 1.02277 1.19394 0.94506 0.92483 0.97939 1.21325 0.90019 1.00940 0.85665 1.88122 1.20415 1.95076 1.23532 1.22297 0.81703 1.00791 0.97822 1.19729 0.83721 0.84007 0.88843 1.90549 1.49131 1.53914 1.51436 1.43507 1.03317 1.63395 1.06756 1.21507 0.92383 1.00822 0.88663 1.19689 0.99370 1.40940 0.83070 0.88357 1.25350 0.97007 0.95363 0.99646 1.69997 1.10834 1.35753 1.35774 0.85849 0.78612 0.78204 0.81966 1.19185 1.20683 1.20741 1.20332 0.91339 0.98378 1.04567 0.92656 0.88325 0.92800 0.85604 0.85670 0.85604 0.92289 0.92332 0.91878 0.91536 0.92916 0.90489 0.95756 0.92321 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.90 10.50 -19.43 -0.20 -4.10 16 3 C 0.12 1.59 6.69 -39.22 -0.26 1.33 16 4 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.09 -0.96 10.04 -39.60 -0.40 -1.36 16 6 C -0.13 -1.70 9.70 -39.56 -0.38 -2.09 16 7 C -0.04 -0.61 5.51 -104.64 -0.58 -1.19 16 8 C 0.10 1.40 6.06 36.00 0.22 1.62 16 9 O -0.35 -7.04 9.86 -55.14 -0.54 -7.58 16 10 C 0.05 1.05 5.03 36.01 0.18 1.23 16 11 C 0.45 11.65 7.70 -10.99 -0.08 11.56 16 12 O -0.57 -17.12 16.21 -14.36 -0.23 -17.36 16 13 N -0.45 -11.82 3.01 -122.19 -0.37 -12.19 16 14 C 0.11 2.45 8.44 59.85 0.51 2.95 16 15 C -0.30 -8.66 9.24 -14.94 -0.14 -8.80 16 16 H 0.10 2.95 7.45 -52.49 -0.39 2.56 16 17 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 18 N -0.88 -23.80 10.84 55.50 0.60 -23.20 16 19 Si 0.93 21.05 29.57 -169.99 -5.03 16.02 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.13 -1.82 9.64 -39.43 -0.38 -2.20 16 24 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.33 7.67 -51.93 -0.40 -0.06 16 27 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 28 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.06 1.05 7.41 -51.93 -0.38 0.67 16 33 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 34 H 0.05 1.19 7.83 -51.93 -0.41 0.78 16 35 H 0.08 1.80 6.80 -51.92 -0.35 1.45 16 36 H 0.02 0.43 6.61 -51.93 -0.34 0.09 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -34.76 325.87 -6.73 -41.49 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.09 Total: -0.28 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.77 Total: 2.28 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.23 Total: -35.39 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.98 Total: -29.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.76 -6.73 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522273216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.552 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds