Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 117.00215 * 2 1 4 4 C 1.38757 * 120.05076 * 359.72762 * 3 2 1 5 5 C 1.38133 * 119.93677 * 179.70201 * 4 3 2 6 6 C 1.38283 * 120.05847 * 0.58818 * 5 4 3 7 7 C 1.38248 * 120.10940 * 359.68377 * 6 5 4 8 8 C 1.50697 * 119.96892 * 180.02562 * 7 6 5 9 9 O 1.42909 * 109.47014 * 269.97529 * 8 7 6 10 10 C 1.42902 * 113.99627 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46873 * 180.02562 * 10 9 8 12 12 O 1.21295 * 120.00040 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00307 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99509 * 359.97438 * 13 11 10 15 15 C 1.37088 * 120.00252 * 180.02562 * 13 11 10 16 16 H 1.07998 * 120.00400 * 24.39114 * 15 13 11 17 17 C 1.38948 * 120.00044 * 204.38899 * 15 13 11 18 18 N 1.31409 * 120.00091 * 12.66330 * 17 15 13 19 19 Si 1.86799 * 120.00253 * 192.65731 * 17 15 13 20 20 H 1.48498 * 109.47065 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46944 * 120.00397 * 19 17 15 22 22 H 1.48503 * 109.47526 * 240.00443 * 19 17 15 23 23 C 1.38169 * 120.05821 * 0.02562 * 7 6 5 24 24 H 1.09001 * 109.47253 * 60.00080 * 1 2 3 25 25 H 1.09007 * 109.47518 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47555 * 300.00209 * 1 2 3 27 27 H 1.07993 * 120.03302 * 359.97195 * 4 3 2 28 28 H 1.08005 * 119.96671 * 180.29759 * 5 4 3 29 29 H 1.07995 * 119.94569 * 179.70480 * 6 5 4 30 30 H 1.08995 * 109.47666 * 29.97529 * 8 7 6 31 31 H 1.08999 * 109.47056 * 149.98262 * 8 7 6 32 32 H 1.08995 * 109.47520 * 300.00206 * 10 9 8 33 33 H 1.08999 * 109.46880 * 60.00611 * 10 9 8 34 34 H 1.09001 * 109.47471 * 85.87108 * 14 13 11 35 35 H 1.09007 * 109.47287 * 205.86868 * 14 13 11 36 36 H 1.08998 * 109.47468 * 325.86628 * 14 13 11 37 37 H 0.97004 * 120.00354 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.02848 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0057 5 6 1.9209 3.6048 0.0005 6 6 3.3019 3.6758 0.0002 7 6 4.0560 2.5171 0.0002 8 6 5.5607 2.5981 0.0004 9 8 6.0366 2.6233 -1.3470 10 6 7.4591 2.7005 -1.4595 11 6 7.8473 2.7215 -2.9155 12 8 6.9901 2.6754 -3.7725 13 7 9.1469 2.7915 -3.2656 14 6 10.1821 2.8478 -2.2306 15 6 9.5000 2.8111 -4.5901 16 1 8.7966 3.1605 -5.3314 17 6 10.7629 2.3816 -4.9788 18 7 11.5254 1.7297 -4.1300 19 14 11.3769 2.7305 -6.7082 20 1 10.3362 3.4744 -7.4623 21 1 12.6155 3.5469 -6.6383 22 1 11.6676 1.4483 -7.3985 23 6 3.4311 1.2847 0.0000 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2128 2.3203 -0.0106 28 1 1.3340 4.5114 0.0009 29 1 3.7922 4.6380 0.0002 30 1 5.8757 3.5065 0.5139 31 1 5.9714 1.7291 0.5144 32 1 7.8129 3.6112 -0.9764 33 1 7.9094 1.8339 -0.9756 34 1 10.4420 1.8354 -1.9211 35 1 11.0672 3.3444 -2.6284 36 1 9.8078 3.4053 -1.3721 37 1 12.4069 1.4294 -4.4015 38 1 4.0206 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522273216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = -99.688106 kcal Electronic energy + Delta-G solvation = -20857.307640 eV Core-core repulsion = 17472.221924 eV Total energy + Delta-G solvation = -3385.085715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13159 -40.47646 -39.04092 -37.86642 -36.59209 -33.72300 -32.86055 -31.40471 -29.58850 -28.24543 -27.86808 -26.68347 -25.73409 -23.53686 -22.14655 -21.02779 -19.02873 -18.81944 -18.00935 -17.51537 -17.20419 -17.03699 -16.82790 -16.62940 -16.57235 -15.86941 -15.54410 -15.26657 -14.72349 -14.48422 -14.11064 -13.74066 -13.61671 -13.37535 -13.13895 -13.08808 -12.93603 -12.72651 -12.65706 -12.39370 -12.29431 -12.11235 -11.98292 -11.71956 -11.02754 -10.66034 -10.35747 -9.91844 -9.69354 -9.19257 -8.36124 -6.01635 0.21099 0.45991 1.35875 1.41078 1.55282 1.96805 2.16952 2.33270 2.48719 2.89075 3.06161 3.43948 3.83885 3.85216 4.01214 4.09429 4.20258 4.22231 4.30724 4.36206 4.39435 4.40475 4.46338 4.56653 4.66473 4.72251 4.77024 5.02312 5.02540 5.28492 5.36249 5.43120 5.43604 5.60274 5.77113 5.98589 6.20259 6.44147 6.50951 7.15666 7.41714 7.99985 8.67309 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.003012 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.874729 B = 9293.751264 C = 9514.025192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.108 3.892 4 C -0.203 4.203 5 C -0.084 4.084 6 C -0.146 4.146 7 C -0.064 4.064 8 C 0.094 3.906 9 O -0.391 6.391 10 C 0.068 3.932 11 C 0.432 3.568 12 O -0.627 6.627 13 N -0.460 5.460 14 C 0.116 3.884 15 C -0.346 4.346 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.894 5.894 19 Si 0.991 3.009 20 H -0.275 1.275 21 H -0.261 1.261 22 H -0.275 1.275 23 C -0.155 4.155 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.275 0.725 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.186 1.860 14.677 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.063 3.937 4 C -0.222 4.222 5 C -0.102 4.102 6 C -0.164 4.164 7 C -0.064 4.064 8 C 0.018 3.982 9 O -0.310 6.310 10 C -0.011 4.011 11 C 0.222 3.778 12 O -0.514 6.514 13 N -0.181 5.181 14 C -0.027 4.027 15 C -0.474 4.474 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.533 5.533 19 Si 0.814 3.186 20 H -0.200 1.200 21 H -0.186 1.186 22 H -0.201 1.201 23 C -0.173 4.173 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.089 0.911 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.424 1.549 14.131 20.976 hybrid contribution 0.485 -0.111 -0.804 0.946 sum -14.938 1.438 13.327 20.071 Atomic orbital electron populations 1.23356 0.76293 1.05584 1.02377 1.86048 1.23682 1.26889 1.88821 1.19139 0.92148 0.85214 0.97192 1.21584 1.01315 0.91793 1.07488 1.21309 0.94180 0.98218 0.96474 1.21282 0.94655 0.98195 1.02291 1.19541 0.94691 0.93050 0.99160 1.21589 0.90239 1.02957 0.83396 1.88069 1.20318 1.95473 1.27149 1.22120 0.82336 1.03498 0.93138 1.20866 0.82995 0.82583 0.91400 1.90495 1.50626 1.56378 1.53858 1.43800 1.04552 1.62857 1.06876 1.21538 0.91124 1.01030 0.88958 1.19619 1.00015 1.43528 0.84225 0.91457 1.26103 0.96303 0.94375 1.03507 1.70052 1.11104 1.34934 1.37190 0.84919 0.78246 0.78264 0.77134 1.20004 1.18587 1.20101 1.20464 0.92365 0.98354 1.06157 0.91941 0.86462 0.91092 0.82711 0.82526 0.84360 0.89556 0.90871 0.88210 0.89237 0.93510 0.92038 0.90928 0.91528 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.20 10.50 -92.42 -0.97 -9.17 16 3 C 0.11 2.81 6.69 22.51 0.15 2.96 16 4 C -0.20 -4.22 9.04 22.37 0.20 -4.01 16 5 C -0.08 -1.70 10.04 22.26 0.22 -1.48 16 6 C -0.15 -3.55 9.70 22.28 0.22 -3.33 16 7 C -0.06 -1.81 5.51 -19.88 -0.11 -1.92 16 8 C 0.09 2.60 6.06 71.24 0.43 3.03 16 9 O -0.39 -15.43 9.86 -129.94 -1.28 -16.71 16 10 C 0.07 2.59 5.03 71.24 0.36 2.94 16 11 C 0.43 22.75 7.70 87.66 0.68 23.42 16 12 O -0.63 -39.47 16.21 15.96 0.26 -39.21 16 13 N -0.46 -24.58 3.01 -658.90 -1.98 -26.56 16 14 C 0.12 5.03 8.44 127.77 1.08 6.11 16 15 C -0.35 -20.37 9.24 84.04 0.78 -19.59 16 16 H 0.07 4.28 7.45 -2.91 -0.02 4.26 16 17 C 0.00 -0.05 5.04 84.93 0.43 0.38 16 18 N -0.89 -47.69 10.84 21.66 0.23 -47.45 16 19 Si 0.99 43.16 29.57 68.60 2.03 45.19 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 C -0.15 -4.50 9.64 22.37 0.22 -4.29 16 24 H 0.06 0.75 7.65 -2.39 -0.02 0.73 16 25 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 27 H 0.16 2.18 6.30 -2.91 -0.02 2.16 16 28 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.10 3.01 7.41 -2.39 -0.02 2.99 16 33 H 0.09 2.95 8.11 -2.39 -0.02 2.93 16 34 H 0.05 2.06 7.83 -2.39 -0.02 2.04 16 35 H 0.06 2.83 6.80 -2.38 -0.02 2.81 16 36 H 0.07 2.40 6.61 -2.39 -0.02 2.38 16 37 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 38 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -78.77 325.87 5.10 -73.66 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.06 Total: 14.69 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.76 Total: 5.57 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.75 Total: -74.02 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -1.99 Total: -65.10 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -78.77 5.10 -73.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522273216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.027 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds