Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38564 * 120.07359 * 0.02562 * 3 2 1 5 5 C 1.38249 * 119.99882 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14283 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.14909 * 359.97438 * 6 5 4 8 8 C 1.38562 * 120.00144 * 359.73050 * 7 6 5 9 9 O 1.35989 * 120.07693 * 180.26965 * 8 7 6 10 10 C 1.42902 * 117.00101 * 0.27797 * 9 8 7 11 11 C 1.52997 * 109.47390 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47185 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.34784 * 120.00253 * 179.97438 * 13 12 11 15 15 O 1.21687 * 119.99886 * 359.97438 * 14 13 12 16 16 C 1.46371 * 119.99932 * 179.97438 * 14 13 12 17 17 H 1.07995 * 120.00485 * 0.02562 * 16 14 13 18 18 C 1.40055 * 119.99769 * 180.02562 * 16 14 13 19 19 N 1.30673 * 119.99767 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 119.99887 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47383 * 90.00072 * 20 18 16 22 22 H 1.48501 * 109.46803 * 209.99769 * 20 18 16 23 23 H 1.48500 * 109.47347 * 329.99746 * 20 18 16 24 24 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 27 27 H 1.07997 * 120.00180 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.92709 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.92210 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.00037 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46774 * 300.00110 * 10 9 8 32 32 H 1.08997 * 109.46907 * 59.99269 * 10 9 8 33 33 H 1.08997 * 109.46837 * 299.99611 * 11 10 9 34 34 H 1.08992 * 109.47282 * 59.99950 * 11 10 9 35 35 H 1.09010 * 109.46571 * 299.99684 * 12 11 10 36 36 H 1.09000 * 109.47661 * 59.99283 * 12 11 10 37 37 H 0.97000 * 120.00052 * 359.97438 * 13 12 11 38 38 H 0.96998 * 119.99738 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3029 3.6798 0.0005 7 6 4.0602 2.5234 0.0000 8 6 3.4360 1.2864 0.0056 9 8 4.1795 0.1477 0.0107 10 6 5.6003 0.3007 0.0160 11 6 6.2618 -1.0789 0.0205 12 6 7.7830 -0.9151 0.0268 13 7 8.4164 -2.2360 0.0305 14 6 9.7603 -2.3390 0.0357 15 8 10.4474 -1.3348 0.0369 16 6 10.3930 -3.6589 0.0400 17 1 9.7832 -4.5502 0.0385 18 6 11.7895 -3.7659 0.0460 19 7 12.5274 -2.6874 0.0473 20 14 12.5971 -5.4502 0.0507 21 1 12.8171 -5.8977 -1.3481 22 1 13.9015 -5.3717 0.7562 23 1 11.7149 -6.4203 0.7478 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2146 2.3196 0.0005 28 1 1.3342 4.5115 0.0011 29 1 3.7907 4.6434 0.0005 30 1 5.1385 2.5840 0.0000 31 1 5.9100 0.8489 -0.8738 32 1 5.9030 0.8522 0.9061 33 1 5.9522 -1.6273 0.9100 34 1 5.9591 -1.6299 -0.8699 35 1 8.0929 -0.3663 -0.8627 36 1 8.0855 -0.3641 0.9173 37 1 7.8686 -3.0365 0.0291 38 1 13.4945 -2.7615 0.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613934644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -94.813600 kcal Electronic energy + Delta-G solvation = -20409.834169 eV Core-core repulsion = 17024.959828 eV Total energy + Delta-G solvation = -3384.874341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66810 -38.70915 -37.39784 -36.97332 -34.31776 -32.44027 -31.23164 -30.52240 -29.76695 -27.43283 -26.72371 -24.92150 -22.55806 -22.33310 -21.06428 -19.67545 -18.77108 -17.41696 -17.08492 -16.55302 -16.43091 -15.74089 -15.30627 -15.08815 -14.90646 -14.52285 -14.26504 -14.14768 -13.88722 -13.04577 -12.92648 -12.37931 -12.32748 -12.13167 -11.99979 -11.47079 -11.36596 -11.35061 -11.22258 -11.07230 -10.92713 -10.91253 -10.44079 -10.43648 -10.20978 -8.96081 -8.84112 -7.98159 -7.61912 -7.50909 -6.17736 -4.62988 1.07301 1.24784 3.06383 3.06962 3.15484 3.22243 3.25947 3.53326 4.12262 4.54563 4.59976 4.64391 4.77612 4.84704 4.89079 4.90870 4.99550 5.10583 5.20386 5.23062 5.28667 5.37000 5.49186 5.65549 5.68103 5.88524 5.95097 6.03180 6.08181 6.28348 6.46584 6.53686 6.54214 6.93227 7.44710 7.46158 7.94006 8.09767 8.34045 9.03568 9.54113 10.60971 10.79305 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038268 B = 0.002544 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.505312 B =11003.247330 C =11703.698049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.094 3.906 4 C -0.175 4.175 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.175 4.175 8 C 0.108 3.892 9 O -0.304 6.304 10 C 0.062 3.938 11 C -0.126 4.126 12 C 0.137 3.863 13 N -0.768 5.768 14 C 0.554 3.446 15 O -0.582 6.582 16 C -0.545 4.545 17 H 0.068 0.932 18 C 0.087 3.913 19 N -0.769 5.769 20 Si 0.909 3.091 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.138 0.862 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.381 0.619 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.345 9.105 -0.094 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.049 3.951 4 C -0.194 4.194 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.193 4.193 8 C 0.062 3.938 9 O -0.217 6.217 10 C -0.013 4.013 11 C -0.164 4.164 12 C 0.012 3.988 13 N -0.424 5.424 14 C 0.358 3.642 15 O -0.465 6.465 16 C -0.582 4.582 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.398 5.398 20 Si 0.733 3.267 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.213 0.787 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.609 9.544 -0.088 24.541 hybrid contribution -0.014 -0.810 -0.006 0.810 sum -22.622 8.734 -0.094 24.250 Atomic orbital electron populations 1.23054 0.78781 1.03972 1.01007 1.86208 1.20814 1.25884 1.89001 1.18301 0.89239 0.85261 1.02343 1.21047 0.99812 0.91617 1.06904 1.20829 0.94599 0.96906 1.01880 1.20887 0.93718 0.97940 1.00845 1.21203 1.00888 0.91112 1.06136 1.18310 0.88285 0.86439 1.00733 1.86161 1.19072 1.28088 1.88422 1.22800 0.77452 0.99407 1.01667 1.21714 0.95447 0.95342 1.03921 1.20683 0.88646 0.88587 1.00911 1.46105 1.08101 1.05267 1.82887 1.18231 0.78821 0.90801 0.76332 1.90595 1.62006 1.38970 1.54916 1.20889 0.91506 0.91477 1.54344 0.91370 1.25721 0.97423 0.97539 0.92613 1.70025 1.05495 1.28841 1.35405 0.86359 0.78772 0.82711 0.78818 1.19739 1.20468 1.18902 0.88217 0.92845 0.92836 0.84977 0.85739 0.85559 0.84437 0.91713 0.91704 0.90550 0.90542 0.93176 0.93169 0.78702 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.77 10.28 -34.23 -0.35 -4.12 16 3 C 0.09 1.16 6.70 -39.12 -0.26 0.90 16 4 C -0.18 -1.67 9.04 -39.46 -0.36 -2.03 16 5 C -0.12 -1.09 10.04 -39.57 -0.40 -1.49 16 6 C -0.12 -1.10 10.04 -39.58 -0.40 -1.50 16 7 C -0.17 -1.97 9.04 -39.46 -0.36 -2.32 16 8 C 0.11 1.44 6.70 -39.12 -0.26 1.18 16 9 O -0.30 -4.44 9.92 -34.21 -0.34 -4.78 16 10 C 0.06 0.82 4.74 37.16 0.18 0.99 16 11 C -0.13 -1.85 5.70 -26.73 -0.15 -2.00 16 12 C 0.14 2.61 5.67 -4.05 -0.02 2.58 16 13 N -0.77 -17.39 5.55 -61.72 -0.34 -17.74 16 14 C 0.55 16.01 7.75 -12.99 -0.10 15.91 16 15 O -0.58 -19.10 15.02 5.20 0.08 -19.02 16 16 C -0.55 -15.59 9.54 -35.63 -0.34 -15.93 16 17 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 18 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 19 N -0.77 -23.31 11.83 55.55 0.66 -22.65 16 20 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 27 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 28 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.14 1.38 6.30 -52.49 -0.33 1.05 16 31 H 0.06 0.79 7.65 -51.93 -0.40 0.39 16 32 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.38 7.58 8.45 -40.82 -0.35 7.23 16 38 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -36.43 328.42 -7.05 -43.48 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.10 Total: 4.77 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.58 Total: -0.16 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.31 Total: -40.39 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.61 Total: -27.93 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.43 -7.05 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613934644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.330 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds