Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38564 * 120.07359 * 0.02562 * 3 2 1 5 5 C 1.38249 * 119.99882 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14283 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.14909 * 359.97438 * 6 5 4 8 8 C 1.38562 * 120.00144 * 359.73050 * 7 6 5 9 9 O 1.35989 * 120.07693 * 180.26965 * 8 7 6 10 10 C 1.42902 * 117.00101 * 0.27797 * 9 8 7 11 11 C 1.52997 * 109.47390 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47185 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.34784 * 120.00253 * 179.97438 * 13 12 11 15 15 O 1.21687 * 119.99886 * 359.97438 * 14 13 12 16 16 C 1.46371 * 119.99932 * 179.97438 * 14 13 12 17 17 H 1.07995 * 120.00485 * 0.02562 * 16 14 13 18 18 C 1.40055 * 119.99769 * 180.02562 * 16 14 13 19 19 N 1.30673 * 119.99767 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 119.99887 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47383 * 90.00072 * 20 18 16 22 22 H 1.48501 * 109.46803 * 209.99769 * 20 18 16 23 23 H 1.48500 * 109.47347 * 329.99746 * 20 18 16 24 24 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 27 27 H 1.07997 * 120.00180 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.92709 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.92210 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.00037 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46774 * 300.00110 * 10 9 8 32 32 H 1.08997 * 109.46907 * 59.99269 * 10 9 8 33 33 H 1.08997 * 109.46837 * 299.99611 * 11 10 9 34 34 H 1.08992 * 109.47282 * 59.99950 * 11 10 9 35 35 H 1.09010 * 109.46571 * 299.99684 * 12 11 10 36 36 H 1.09000 * 109.47661 * 59.99283 * 12 11 10 37 37 H 0.97000 * 120.00052 * 359.97438 * 13 12 11 38 38 H 0.96998 * 119.99738 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3029 3.6798 0.0005 7 6 4.0602 2.5234 0.0000 8 6 3.4360 1.2864 0.0056 9 8 4.1795 0.1477 0.0107 10 6 5.6003 0.3007 0.0160 11 6 6.2618 -1.0789 0.0205 12 6 7.7830 -0.9151 0.0268 13 7 8.4164 -2.2360 0.0305 14 6 9.7603 -2.3390 0.0357 15 8 10.4474 -1.3348 0.0369 16 6 10.3930 -3.6589 0.0400 17 1 9.7832 -4.5502 0.0385 18 6 11.7895 -3.7659 0.0460 19 7 12.5274 -2.6874 0.0473 20 14 12.5971 -5.4502 0.0507 21 1 12.8171 -5.8977 -1.3481 22 1 13.9015 -5.3717 0.7562 23 1 11.7149 -6.4203 0.7478 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2146 2.3196 0.0005 28 1 1.3342 4.5115 0.0011 29 1 3.7907 4.6434 0.0005 30 1 5.1385 2.5840 0.0000 31 1 5.9100 0.8489 -0.8738 32 1 5.9030 0.8522 0.9061 33 1 5.9522 -1.6273 0.9100 34 1 5.9591 -1.6299 -0.8699 35 1 8.0929 -0.3663 -0.8627 36 1 8.0855 -0.3641 0.9173 37 1 7.8686 -3.0365 0.0291 38 1 13.4945 -2.7615 0.0511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613934644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = -120.787363 kcal Electronic energy + Delta-G solvation = -20410.960476 eV Core-core repulsion = 17024.959828 eV Total energy + Delta-G solvation = -3386.000648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49318 -39.71381 -39.30952 -37.84610 -36.04057 -34.57775 -32.78597 -31.28520 -30.72575 -28.67235 -28.05120 -26.41277 -23.58517 -23.23488 -22.18706 -21.71307 -19.66293 -19.10816 -18.23597 -17.51471 -17.45575 -17.32382 -16.58445 -16.27397 -15.90831 -15.67233 -15.66000 -15.58562 -15.08323 -14.36322 -14.32233 -13.90696 -13.47387 -13.22920 -13.00941 -12.89432 -12.80383 -12.67955 -12.58429 -12.46109 -12.08236 -12.00849 -11.99816 -11.93563 -11.63209 -10.93459 -9.90363 -9.73421 -9.51658 -8.82175 -8.30190 -6.86676 0.30045 0.45556 1.40885 1.42494 1.58013 2.05758 2.26930 2.38608 2.46093 2.75896 3.16991 3.60130 3.83087 3.88315 3.93918 3.99673 4.11645 4.17117 4.30339 4.41255 4.43839 4.45235 4.46021 4.51561 4.64135 4.74103 4.75798 5.07573 5.09836 5.22298 5.31828 5.34478 5.53761 5.75929 5.86698 6.10153 6.21439 6.25678 6.62306 6.85914 7.52632 8.47266 8.66181 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038268 B = 0.002544 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.505312 B =11003.247330 C =11703.698049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.074 3.926 4 C -0.173 4.173 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.183 4.183 8 C 0.071 3.929 9 O -0.324 6.324 10 C 0.067 3.933 11 C -0.109 4.109 12 C 0.140 3.860 13 N -0.757 5.757 14 C 0.536 3.464 15 O -0.633 6.633 16 C -0.574 4.574 17 H 0.089 0.911 18 C 0.027 3.973 19 N -0.823 5.823 20 Si 1.001 2.999 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.249 1.249 24 H 0.112 0.888 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.397 0.603 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.079 8.713 -0.095 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.029 3.971 4 C -0.192 4.192 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.202 4.202 8 C 0.025 3.975 9 O -0.239 6.239 10 C -0.008 4.008 11 C -0.147 4.147 12 C 0.015 3.985 13 N -0.412 5.412 14 C 0.340 3.660 15 O -0.520 6.520 16 C -0.610 4.610 17 H 0.107 0.893 18 C -0.188 4.188 19 N -0.452 5.452 20 Si 0.820 3.180 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.172 1.172 24 H 0.130 0.870 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.177 0.823 28 H 0.175 0.825 29 H 0.168 0.832 30 H 0.159 0.841 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.231 0.769 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.426 9.147 -0.089 26.082 hybrid contribution 0.379 -0.580 -0.008 0.693 sum -24.047 8.567 -0.097 25.527 Atomic orbital electron populations 1.23337 0.76539 1.05368 1.02339 1.86154 1.23322 1.26474 1.89227 1.18624 0.89248 0.86198 1.03020 1.21409 1.01115 0.90959 1.05690 1.21278 0.94626 0.97857 0.99830 1.21251 0.94314 0.98280 1.00051 1.21390 1.01395 0.91229 1.06182 1.18699 0.88967 0.86587 1.03214 1.86083 1.19158 1.29401 1.89226 1.22666 0.77502 0.98236 1.02420 1.21465 0.92093 0.96679 1.04414 1.20736 0.91349 0.86530 0.99902 1.45789 1.06697 1.07413 1.81257 1.18638 0.80564 0.90659 0.76109 1.90547 1.63812 1.40379 1.57300 1.21448 0.92757 0.92104 1.54700 0.89327 1.27019 0.97907 1.02739 0.91169 1.70189 1.06263 1.32335 1.36422 0.84980 0.77551 0.76065 0.79439 1.18565 1.19740 1.17208 0.86973 0.91439 0.91424 0.82308 0.82511 0.83203 0.84090 0.91021 0.91015 0.90021 0.90010 0.94213 0.94201 0.76942 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.23 10.28 -79.62 -0.82 -9.05 16 3 C 0.07 1.79 6.70 22.57 0.15 1.94 16 4 C -0.17 -2.95 9.04 22.35 0.20 -2.74 16 5 C -0.12 -1.75 10.04 22.28 0.22 -1.52 16 6 C -0.12 -2.06 10.04 22.27 0.22 -1.84 16 7 C -0.18 -4.04 9.04 22.35 0.20 -3.84 16 8 C 0.07 1.89 6.70 22.57 0.15 2.04 16 9 O -0.32 -9.63 9.92 -79.56 -0.79 -10.42 16 10 C 0.07 1.78 4.74 71.98 0.34 2.12 16 11 C -0.11 -3.18 5.70 30.59 0.17 -3.00 16 12 C 0.14 5.42 5.67 86.38 0.49 5.91 16 13 N -0.76 -34.76 5.55 -467.41 -2.59 -37.35 16 14 C 0.54 31.76 7.75 86.36 0.67 32.43 16 15 O -0.63 -43.19 15.02 -4.31 -0.06 -43.26 16 16 C -0.57 -32.99 9.54 24.83 0.24 -32.76 16 17 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 18 C 0.03 1.50 5.50 85.31 0.47 1.97 16 19 N -0.82 -51.00 11.83 21.84 0.26 -50.74 16 20 Si 1.00 41.29 29.56 68.60 2.03 43.32 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 24 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 26 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.16 1.70 6.30 -2.91 -0.02 1.69 16 28 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.14 2.83 6.30 -2.91 -0.02 2.81 16 31 H 0.07 1.76 7.65 -2.39 -0.02 1.74 16 32 H 0.07 1.76 7.67 -2.39 -0.02 1.75 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.40 15.66 8.45 -92.71 -0.78 14.87 16 38 H 0.28 15.38 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -81.69 328.42 2.96 -78.73 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.29 Total: 26.69 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.65 Total: 2.07 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -2.34 Total: -88.10 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -1.67 Total: -62.72 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -81.69 2.96 -78.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613934644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.053 kcal (2) G-P(sol) polarization free energy of solvation -81.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds