Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 359.97438 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08726 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00063 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47124 * 179.97438 * 10 9 8 12 12 O 1.20823 * 119.99941 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99948 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00019 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47298 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47155 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00341 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00080 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99676 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47287 * 59.99752 * 20 18 16 22 22 H 1.48496 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46809 * 299.99509 * 20 18 16 24 24 H 1.09004 * 109.47206 * 300.00224 * 1 2 3 25 25 H 1.08997 * 109.46745 * 60.00389 * 1 2 3 26 26 H 1.09000 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.98747 * 0.25239 * 4 3 2 28 28 H 1.07997 * 119.90793 * 179.97438 * 5 4 3 29 29 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.00480 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99633 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.46950 * 300.00065 * 10 9 8 33 33 H 1.08998 * 109.47411 * 59.99531 * 10 9 8 34 34 H 1.09004 * 109.47065 * 299.99795 * 14 13 11 35 35 H 1.09001 * 109.47125 * 59.99565 * 14 13 11 36 36 H 1.09004 * 109.46932 * 299.99922 * 15 14 13 37 37 H 1.09000 * 109.46867 * 59.99535 * 15 14 13 38 38 H 0.97006 * 119.99720 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 -0.0005 5 6 1.9229 3.6060 0.0000 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0011 8 6 3.4376 1.2868 0.0016 9 7 4.2034 0.1152 0.0016 10 6 5.6662 0.1962 0.0016 11 6 6.2463 -1.1946 0.0023 12 8 5.5132 -2.1550 0.0031 13 8 7.5776 -1.3665 0.0029 14 6 8.0656 -2.7340 0.0029 15 6 9.5957 -2.7295 0.0030 16 6 10.1022 -4.1488 0.0037 17 1 9.4029 -4.9718 0.0044 18 6 11.4585 -4.3967 0.0044 19 7 12.3101 -3.3945 0.0051 20 14 12.0864 -6.1560 0.0045 21 1 11.5942 -6.8574 -1.2083 22 1 13.5714 -6.1515 0.0047 23 1 11.5929 -6.8576 1.2167 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2152 2.3193 0.0032 28 1 1.3342 4.5114 -0.0008 29 1 3.7903 4.6452 0.0005 30 1 5.1400 2.5874 0.0011 31 1 3.7656 -0.7503 0.0016 32 1 6.0005 0.7294 -0.8884 33 1 6.0006 0.7294 0.8915 34 1 7.7034 -3.2491 0.8927 35 1 7.7042 -3.2488 -0.8873 36 1 9.9575 -2.2145 -0.8870 37 1 9.9574 -2.2145 0.8930 38 1 13.2644 -3.5689 0.0052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735935136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = -120.510681 kcal Electronic energy + Delta-G solvation = -20472.627661 eV Core-core repulsion = 17086.639011 eV Total energy + Delta-G solvation = -3385.988650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68166 -41.00680 -38.51821 -37.89407 -36.22281 -35.47274 -32.49778 -31.18793 -31.01021 -28.37545 -27.85550 -26.74102 -23.55578 -23.02229 -22.67099 -21.70366 -19.65779 -18.82445 -18.30605 -17.97240 -17.84184 -17.14244 -16.80496 -16.62593 -16.46085 -15.70232 -15.66123 -15.21797 -14.91770 -14.56906 -14.38729 -14.26232 -14.02262 -13.49409 -13.12618 -13.05226 -12.89748 -12.61441 -12.60405 -12.31065 -11.96911 -11.93796 -11.84965 -11.58009 -11.53461 -11.40553 -11.13502 -10.61826 -9.43966 -8.28164 -8.18970 -6.41463 0.51146 0.67947 1.02923 1.37653 1.43930 1.45138 1.53436 2.33448 2.39950 2.61836 2.95903 3.06324 3.55932 3.95036 4.14295 4.17525 4.20245 4.26248 4.27614 4.32143 4.41923 4.44099 4.57602 4.66320 4.69407 4.74610 4.92234 5.19725 5.25796 5.45231 5.47455 5.49510 5.71848 5.73442 5.89821 6.03732 6.06227 6.48344 6.61678 6.71873 6.74012 7.28328 8.84173 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038354 B = 0.002612 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.857935 B =10716.012689 C =11414.819973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.035 3.965 4 C -0.167 4.167 5 C -0.143 4.143 6 C -0.108 4.108 7 C -0.176 4.176 8 C 0.173 3.827 9 N -0.746 5.746 10 C 0.144 3.856 11 C 0.453 3.547 12 O -0.539 6.539 13 O -0.358 6.358 14 C 0.091 3.909 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.406 0.594 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.643 14.899 -0.011 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.262 6.262 3 C -0.013 4.013 4 C -0.187 4.187 5 C -0.163 4.163 6 C -0.127 4.127 7 C -0.198 4.198 8 C 0.072 3.928 9 N -0.382 5.382 10 C 0.019 3.981 11 C 0.297 3.703 12 O -0.430 6.430 13 O -0.273 6.273 14 C 0.018 3.982 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.242 0.758 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.349 14.468 -0.010 26.623 hybrid contribution 0.169 -1.382 0.002 1.393 sum -22.180 13.085 -0.008 25.752 Atomic orbital electron populations 1.23216 0.76779 1.04901 1.02063 1.85990 1.23172 1.27051 1.89971 1.18744 0.90501 0.85675 1.06407 1.21278 1.00566 0.91538 1.05276 1.21086 0.94945 0.97323 1.02984 1.21177 0.93945 0.98360 0.99223 1.20859 1.01042 0.89872 1.08059 1.17443 0.87522 0.87432 1.00440 1.44272 1.03082 1.06953 1.83860 1.20740 0.81337 0.89070 1.06987 1.24187 0.81099 0.93377 0.71632 1.90624 1.61192 1.44101 1.47040 1.86489 1.23578 1.34358 1.82914 1.23209 0.96234 0.77687 1.01087 1.18984 0.87769 0.96987 0.96898 1.21345 0.92622 0.92362 1.52707 0.91774 1.25949 0.96927 1.02282 0.94046 1.70084 1.02873 1.33279 1.50246 0.85389 0.77151 0.78572 0.79286 1.19104 1.20414 1.19096 0.91778 0.91770 0.87382 0.83704 0.83728 0.83494 0.83797 0.75755 0.85679 0.85688 0.92126 0.92128 0.97295 0.97305 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.35 -8.08 9.74 -93.69 -0.91 -8.99 16 3 C 0.03 0.79 6.70 22.59 0.15 0.94 16 4 C -0.17 -2.91 9.04 22.35 0.20 -2.71 16 5 C -0.14 -2.16 10.04 22.28 0.22 -1.93 16 6 C -0.11 -1.68 10.04 22.27 0.22 -1.46 16 7 C -0.18 -3.29 9.31 22.38 0.21 -3.09 16 8 C 0.17 4.06 6.67 38.22 0.25 4.32 16 9 N -0.75 -19.19 5.70 -342.69 -1.95 -21.15 16 10 C 0.14 3.36 5.51 85.63 0.47 3.83 16 11 C 0.45 15.11 8.03 71.24 0.57 15.68 16 12 O -0.54 -21.02 15.42 21.97 0.34 -20.68 16 13 O -0.36 -13.83 10.22 -51.43 -0.53 -14.35 16 14 C 0.09 4.05 5.40 71.98 0.39 4.44 16 15 C 0.03 1.64 5.35 29.85 0.16 1.80 16 16 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 17 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 18 C 0.01 0.40 5.46 84.65 0.46 0.87 16 19 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 20 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 25 H 0.06 0.71 7.67 -2.39 -0.02 0.69 16 26 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.15 1.80 6.30 -2.91 -0.02 1.78 16 28 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.14 2.17 6.74 -2.91 -0.02 2.15 16 31 H 0.41 12.07 6.80 -92.71 -0.63 11.44 16 32 H 0.13 2.36 7.95 -2.39 -0.02 2.34 16 33 H 0.13 2.36 7.95 -2.39 -0.02 2.34 16 34 H 0.06 2.68 8.13 -2.38 -0.02 2.66 16 35 H 0.06 2.67 8.13 -2.39 -0.02 2.66 16 36 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -69.40 329.64 4.36 -65.04 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.44 Total: 16.40 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.66 Total: -6.89 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.67 Total: -76.06 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.10 Total: -44.03 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.40 4.36 -65.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735935136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.472 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds