Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35999 * 117.00007 * 2 1 4 4 C 1.38700 * 119.97682 * 180.02562 * 3 2 1 5 5 C 1.38107 * 120.02084 * 180.02562 * 4 3 2 6 6 C 1.38865 * 119.97761 * 359.97438 * 5 4 3 7 7 N 1.39938 * 120.01705 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00064 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47289 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47130 * 179.97438 * 10 9 8 12 12 O 1.21202 * 119.99890 * 0.02562 * 11 10 9 13 13 O 1.34315 * 119.99553 * 179.97438 * 11 10 9 14 14 C 1.34923 * 116.99644 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99973 * 0.02562 * 14 13 11 16 16 C 1.38756 * 119.99899 * 180.02562 * 14 13 11 17 17 N 1.31433 * 119.99994 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47388 * 90.00045 * 18 16 14 20 20 H 1.48505 * 109.46995 * 209.99909 * 18 16 14 21 21 H 1.48502 * 109.47432 * 329.99555 * 18 16 14 22 22 C 1.38853 * 119.96152 * 0.27001 * 6 5 4 23 23 C 1.38111 * 119.98123 * 359.47567 * 22 6 5 24 24 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46816 * 300.00860 * 1 2 3 26 26 H 1.09005 * 109.46837 * 60.00043 * 1 2 3 27 27 H 1.08002 * 119.99215 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.01475 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00685 * 359.97438 * 7 6 5 30 30 H 1.09001 * 109.47060 * 300.00161 * 8 7 6 31 31 H 1.09004 * 109.47073 * 59.99649 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 33 33 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 34 34 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 35 35 H 1.09004 * 109.47298 * 59.99717 * 10 9 8 36 36 H 0.97002 * 119.99843 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.00891 * 179.70645 * 22 6 5 38 38 H 1.08000 * 119.99090 * 180.25064 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0596 2.5139 0.0000 6 6 3.3037 3.6788 0.0005 7 7 3.9391 4.9256 0.0005 8 6 3.1413 6.1543 0.0005 9 6 4.0733 7.3676 0.0012 10 6 3.2402 8.6508 0.0018 11 6 4.1582 9.8459 0.0031 12 8 5.3598 9.6870 0.0030 13 8 3.6449 11.0871 0.0033 14 6 4.5217 12.1125 0.0039 15 1 5.5835 11.9151 0.0038 16 6 4.0592 13.4208 0.0047 17 7 2.7670 13.6610 0.0044 18 14 5.2732 14.8405 0.0063 19 1 5.5955 15.2178 -1.3933 20 1 4.6730 16.0042 0.7070 21 1 6.5161 14.4283 0.7066 22 6 1.9171 3.6057 0.0062 23 6 1.2908 2.3748 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0193 0.3777 -0.0014 28 1 5.1381 2.5698 0.0000 29 1 4.9078 4.9764 0.0005 30 1 2.5124 6.1792 -0.8894 31 1 2.5124 6.1792 0.8905 32 1 4.7018 7.3425 0.8914 33 1 4.7025 7.3429 -0.8885 34 1 2.6114 8.6762 -0.8882 35 1 2.6112 8.6753 0.8918 36 1 2.4437 14.5755 0.0045 37 1 1.3285 4.5112 0.0114 38 1 0.2123 2.3178 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736837535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = -99.301434 kcal Electronic energy + Delta-G solvation = -20078.774360 eV Core-core repulsion = 16693.705412 eV Total energy + Delta-G solvation = -3385.068948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20053 -39.05482 -38.19866 -36.00496 -35.04939 -32.65145 -32.13069 -31.18919 -29.14887 -27.43309 -26.26432 -24.97389 -23.16849 -21.79883 -21.29227 -19.73936 -18.28074 -17.73789 -17.13614 -16.67197 -16.09604 -15.86812 -15.74055 -15.08493 -14.67966 -14.47339 -14.37902 -14.28310 -13.64873 -13.30229 -13.20232 -12.83639 -12.40891 -12.38534 -12.07036 -11.87916 -11.53461 -11.49601 -11.23083 -11.16577 -10.84744 -10.69399 -10.44275 -10.37146 -9.81384 -9.60272 -9.11910 -9.04446 -8.58845 -7.20239 -6.41990 -4.09938 1.22191 1.54012 3.10369 3.16728 3.18626 3.23911 3.38571 3.52954 3.74272 3.95736 4.51670 4.66832 4.75551 4.89282 4.92354 5.06973 5.13890 5.15901 5.17442 5.22760 5.26451 5.36061 5.44923 5.65422 5.69796 5.83829 5.88496 5.98515 6.18820 6.28667 6.28769 6.38774 6.53290 6.79043 7.17511 7.37081 7.39161 7.69491 7.94847 8.70925 9.07067 9.85086 10.76142 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.056396 B = 0.002241 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.366947 B =12489.416052 C =12954.730188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.060 3.940 4 C -0.101 4.101 5 C -0.160 4.160 6 C 0.189 3.811 7 N -0.748 5.748 8 C 0.125 3.875 9 C -0.114 4.114 10 C -0.100 4.100 11 C 0.396 3.604 12 O -0.559 6.559 13 O -0.216 6.216 14 C -0.383 4.383 15 H 0.095 0.905 16 C 0.041 3.959 17 N -0.866 5.866 18 Si 0.943 3.057 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.161 4.161 23 C -0.156 4.156 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.401 0.599 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.125 0.875 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -22.807 -0.001 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.014 3.986 4 C -0.121 4.121 5 C -0.183 4.183 6 C 0.086 3.914 7 N -0.378 5.378 8 C 0.001 3.999 9 C -0.152 4.152 10 C -0.138 4.138 11 C 0.243 3.757 12 O -0.457 6.457 13 O -0.123 6.123 14 C -0.459 4.459 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.503 5.503 18 Si 0.768 3.232 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.184 4.184 23 C -0.176 4.176 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.235 0.765 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.539 -22.660 0.005 23.110 hybrid contribution 0.574 0.971 -0.009 1.128 sum -3.964 -21.689 -0.004 22.049 Atomic orbital electron populations 1.22964 0.79023 1.03453 1.01099 1.86036 1.20792 1.27082 1.89959 1.18752 0.92218 0.84009 1.03605 1.20121 0.91280 0.97777 1.02891 1.20418 0.99432 0.90378 1.08057 1.17791 0.91826 0.85706 0.96027 1.44704 1.08358 1.02104 1.82669 1.21362 0.94190 0.83276 1.01109 1.21474 0.97910 0.91558 1.04263 1.20947 0.97806 0.90384 1.04678 1.23149 0.88248 0.85806 0.78505 1.90548 1.17097 1.86937 1.51105 1.83878 1.39907 1.12970 1.75549 1.21214 0.89674 0.82597 1.52401 0.88744 1.25338 0.96969 0.97739 0.96239 1.69988 1.12535 1.21125 1.46675 0.85679 0.79483 0.79339 0.78720 1.19895 1.20328 1.19135 1.20480 0.92610 0.97675 1.07645 1.20987 0.99598 0.91843 1.05133 0.88668 0.92972 0.92966 0.85467 0.85541 0.76470 0.92182 0.92190 0.90610 0.90606 0.88915 0.88920 0.92091 0.85689 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.39 10.50 -19.74 -0.21 -3.59 16 3 C 0.06 0.66 6.69 -39.24 -0.26 0.40 16 4 C -0.10 -1.07 9.98 -39.46 -0.39 -1.46 16 5 C -0.16 -1.67 9.89 -39.40 -0.39 -2.06 16 6 C 0.19 2.13 6.66 -83.70 -0.56 1.58 16 7 N -0.75 -8.14 5.74 -58.58 -0.34 -8.47 16 8 C 0.12 1.39 4.91 -4.04 -0.02 1.37 16 9 C -0.11 -1.59 4.62 -26.73 -0.12 -1.71 16 10 C -0.10 -1.65 5.81 -27.88 -0.16 -1.82 16 11 C 0.40 9.53 7.91 36.01 0.28 9.81 16 12 O -0.56 -14.71 15.22 -19.04 -0.29 -15.00 16 13 O -0.22 -6.15 9.75 -20.72 -0.20 -6.36 16 14 C -0.38 -11.34 9.65 30.92 0.30 -11.04 16 15 H 0.09 2.82 6.86 -52.49 -0.36 2.46 16 16 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 17 N -0.87 -25.40 13.67 55.48 0.76 -24.64 16 18 Si 0.94 21.33 29.55 -169.99 -5.02 16.30 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.16 -1.76 9.31 -39.40 -0.37 -2.13 16 23 C -0.16 -1.61 9.03 -39.46 -0.36 -1.97 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.40 3.99 8.49 -40.82 -0.35 3.65 16 30 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 31 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 32 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.13 1.24 6.73 -52.48 -0.35 0.89 16 38 H 0.12 1.02 6.29 -52.49 -0.33 0.69 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -34.21 330.13 -6.58 -40.79 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.10 Total: 2.77 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.15 Total: -6.78 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.42 Total: -33.11 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.70 Total: -24.95 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.21 -6.58 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736837535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.509 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds