Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35999 * 117.00007 * 2 1 4 4 C 1.38700 * 119.97682 * 180.02562 * 3 2 1 5 5 C 1.38107 * 120.02084 * 180.02562 * 4 3 2 6 6 C 1.38865 * 119.97761 * 359.97438 * 5 4 3 7 7 N 1.39938 * 120.01705 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00064 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47289 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47131 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47130 * 179.97438 * 10 9 8 12 12 O 1.21202 * 119.99890 * 0.02562 * 11 10 9 13 13 O 1.34315 * 119.99553 * 179.97438 * 11 10 9 14 14 C 1.34923 * 116.99644 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99973 * 0.02562 * 14 13 11 16 16 C 1.38756 * 119.99899 * 180.02562 * 14 13 11 17 17 N 1.31433 * 119.99994 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47388 * 90.00045 * 18 16 14 20 20 H 1.48505 * 109.46995 * 209.99909 * 18 16 14 21 21 H 1.48502 * 109.47432 * 329.99555 * 18 16 14 22 22 C 1.38853 * 119.96152 * 0.27001 * 6 5 4 23 23 C 1.38111 * 119.98123 * 359.47567 * 22 6 5 24 24 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46816 * 300.00860 * 1 2 3 26 26 H 1.09005 * 109.46837 * 60.00043 * 1 2 3 27 27 H 1.08002 * 119.99215 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.01475 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00685 * 359.97438 * 7 6 5 30 30 H 1.09001 * 109.47060 * 300.00161 * 8 7 6 31 31 H 1.09004 * 109.47073 * 59.99649 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 33 33 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 34 34 H 1.09001 * 109.46997 * 299.99574 * 10 9 8 35 35 H 1.09004 * 109.47298 * 59.99717 * 10 9 8 36 36 H 0.97002 * 119.99843 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.00891 * 179.70645 * 22 6 5 38 38 H 1.08000 * 119.99090 * 180.25064 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0596 2.5139 0.0000 6 6 3.3037 3.6788 0.0005 7 7 3.9391 4.9256 0.0005 8 6 3.1413 6.1543 0.0005 9 6 4.0733 7.3676 0.0012 10 6 3.2402 8.6508 0.0018 11 6 4.1582 9.8459 0.0031 12 8 5.3598 9.6870 0.0030 13 8 3.6449 11.0871 0.0033 14 6 4.5217 12.1125 0.0039 15 1 5.5835 11.9151 0.0038 16 6 4.0592 13.4208 0.0047 17 7 2.7670 13.6610 0.0044 18 14 5.2732 14.8405 0.0063 19 1 5.5955 15.2178 -1.3933 20 1 4.6730 16.0042 0.7070 21 1 6.5161 14.4283 0.7066 22 6 1.9171 3.6057 0.0062 23 6 1.2908 2.3748 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0193 0.3777 -0.0014 28 1 5.1381 2.5698 0.0000 29 1 4.9078 4.9764 0.0005 30 1 2.5124 6.1792 -0.8894 31 1 2.5124 6.1792 0.8905 32 1 4.7018 7.3425 0.8914 33 1 4.7025 7.3429 -0.8885 34 1 2.6114 8.6762 -0.8882 35 1 2.6112 8.6753 0.8918 36 1 2.4437 14.5755 0.0045 37 1 1.3285 4.5112 0.0114 38 1 0.2123 2.3178 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736837535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = -121.272512 kcal Electronic energy + Delta-G solvation = -20079.727097 eV Core-core repulsion = 16693.705412 eV Total energy + Delta-G solvation = -3386.021685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05519 -40.91272 -39.00718 -37.55039 -36.46953 -34.31672 -33.79031 -31.95327 -30.08440 -28.36253 -27.54546 -26.54927 -24.18934 -22.78944 -22.17746 -21.40436 -19.87805 -19.01079 -18.51593 -17.88921 -17.20095 -17.12637 -16.49524 -16.49053 -16.21022 -15.94612 -15.66929 -15.35539 -14.47979 -14.33711 -14.28416 -13.99692 -13.68097 -13.56437 -13.42726 -13.00116 -12.86216 -12.67290 -12.42431 -12.38670 -12.21841 -12.16581 -11.97782 -11.77069 -11.58717 -11.04155 -10.70251 -10.39263 -9.89826 -8.54590 -8.00803 -6.34349 0.44389 0.73482 1.31077 1.33885 1.50922 1.66194 2.09943 2.42640 2.59563 2.92073 2.95025 2.96851 3.93012 4.00569 4.01663 4.02400 4.08008 4.35238 4.45865 4.46015 4.54224 4.58290 4.61310 4.66350 4.73827 4.78791 4.89279 5.08581 5.13216 5.17609 5.21180 5.27266 5.40526 5.50893 5.76167 5.83425 6.38073 6.62949 6.68828 6.88666 6.91080 7.77633 8.66181 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.056396 B = 0.002241 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.366947 B =12489.416052 C =12954.730188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.048 3.952 4 C -0.113 4.113 5 C -0.164 4.164 6 C 0.175 3.825 7 N -0.749 5.749 8 C 0.136 3.864 9 C -0.102 4.102 10 C -0.090 4.090 11 C 0.392 3.608 12 O -0.586 6.586 13 O -0.248 6.248 14 C -0.422 4.422 15 H 0.080 0.920 16 C -0.006 4.006 17 N -0.903 5.903 18 Si 1.017 2.983 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.265 1.265 22 C -0.171 4.171 23 C -0.160 4.160 24 H 0.115 0.885 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.403 0.597 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.134 0.866 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -23.243 -0.021 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.257 6.257 3 C 0.002 3.998 4 C -0.132 4.132 5 C -0.186 4.186 6 C 0.072 3.928 7 N -0.381 5.381 8 C 0.012 3.988 9 C -0.140 4.140 10 C -0.128 4.128 11 C 0.241 3.759 12 O -0.485 6.485 13 O -0.156 6.156 14 C -0.498 4.498 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.540 5.540 18 Si 0.836 3.164 19 H -0.185 1.185 20 H -0.184 1.184 21 H -0.189 1.189 22 C -0.194 4.194 23 C -0.179 4.179 24 H 0.133 0.867 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.238 0.762 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.152 0.848 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.093 -23.131 -0.017 23.685 hybrid contribution 0.705 0.946 -0.003 1.180 sum -4.388 -22.185 -0.020 22.615 Atomic orbital electron populations 1.23228 0.77210 1.05095 1.01789 1.86013 1.22776 1.26965 1.89930 1.18985 0.92642 0.84542 1.03606 1.20363 0.91612 0.98327 1.02918 1.20617 1.00253 0.90168 1.07594 1.17952 0.92223 0.85864 0.96712 1.44642 1.08522 1.01928 1.83018 1.21213 0.93446 0.82058 1.02131 1.21342 0.97845 0.91547 1.03265 1.21120 0.97074 0.87752 1.06854 1.24642 0.89126 0.86262 0.75906 1.90517 1.18927 1.87261 1.51752 1.83904 1.40425 1.14372 1.76912 1.21386 0.89441 0.84011 1.54916 0.90232 1.26526 0.99225 1.00050 0.94775 1.70065 1.14458 1.22478 1.47034 0.84638 0.76767 0.75543 0.79497 1.18491 1.18393 1.18908 1.20685 0.92689 0.98316 1.07727 1.21206 1.00631 0.91452 1.04658 0.86695 0.92242 0.92235 0.84441 0.84169 0.76158 0.91150 0.91158 0.91680 0.91668 0.86568 0.86576 0.91204 0.84784 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -6.74 10.50 -93.54 -0.98 -7.72 16 3 C 0.05 1.01 6.69 22.49 0.15 1.16 16 4 C -0.11 -2.28 9.98 22.35 0.22 -2.06 16 5 C -0.16 -3.23 9.89 22.39 0.22 -3.01 16 6 C 0.18 3.69 6.66 38.14 0.25 3.95 16 7 N -0.75 -15.18 5.74 -339.26 -1.95 -17.13 16 8 C 0.14 2.74 4.91 86.38 0.42 3.17 16 9 C -0.10 -2.71 4.62 30.59 0.14 -2.57 16 10 C -0.09 -2.87 5.81 29.85 0.17 -2.69 16 11 C 0.39 19.06 7.91 71.24 0.56 19.62 16 12 O -0.59 -31.47 15.22 20.80 0.32 -31.15 16 13 O -0.25 -14.44 9.75 14.80 0.14 -14.30 16 14 C -0.42 -25.63 9.65 67.94 0.66 -24.97 16 15 H 0.08 4.92 6.86 -2.91 -0.02 4.90 16 16 C -0.01 -0.32 5.49 84.88 0.47 0.14 16 17 N -0.90 -53.24 13.67 21.62 0.30 -52.94 16 18 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 C -0.17 -3.46 9.31 22.39 0.21 -3.25 16 23 C -0.16 -3.06 9.03 22.35 0.20 -2.86 16 24 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.59 7.66 -2.38 -0.02 0.57 16 26 H 0.06 0.59 7.66 -2.38 -0.02 0.57 16 27 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.40 7.60 8.49 -92.71 -0.79 6.81 16 30 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16 31 H 0.07 1.31 7.94 -2.38 -0.02 1.29 16 32 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 33 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.13 2.37 6.73 -2.91 -0.02 2.35 16 38 H 0.14 2.06 6.29 -2.91 -0.02 2.04 16 Total: -1.00 -75.10 330.13 4.94 -70.16 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.29 Total: 19.62 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.80 Total: -12.02 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.65 Total: -70.07 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.52 Total: -53.17 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.10 4.94 -70.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736837535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.110 kcal (2) G-P(sol) polarization free energy of solvation -75.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds