Wall clock time and date at job start Wed Apr 15 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41600 * 114.00004 * 2 1 4 4 C 1.29400 * 120.00051 * 179.97438 * 3 2 1 5 5 C 1.47520 * 119.99946 * 180.02562 * 4 3 2 6 6 C 1.39670 * 120.07884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99823 * 180.02562 * 6 5 4 8 8 C 1.38751 * 120.15522 * 0.02562 * 7 6 5 9 9 O 1.35899 * 119.92619 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99946 * 0.02562 * 9 8 7 11 11 C 1.39327 * 120.15173 * 359.97438 * 8 7 6 12 12 O 1.36004 * 120.00096 * 179.97438 * 11 8 7 13 13 C 1.42903 * 116.99787 * 180.02562 * 12 11 8 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48502 * 109.47140 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 C 1.38213 * 120.00048 * 0.24000 * 11 8 7 24 24 H 1.08993 * 109.46907 * 299.99717 * 1 2 3 25 25 H 1.09006 * 109.46686 * 59.99906 * 1 2 3 26 26 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99648 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.00186 * 0.02562 * 6 5 4 29 29 H 1.08008 * 119.92064 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47376 * 300.00348 * 10 9 8 31 31 H 1.08998 * 109.46803 * 60.00520 * 10 9 8 32 32 H 1.08994 * 109.47096 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47382 * 60.00075 * 13 12 11 34 34 H 1.09001 * 109.46938 * 300.00061 * 13 12 11 35 35 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 36 36 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 37 37 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.07770 * 179.72072 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2919 1.4289 0.0005 5 6 3.8919 2.7765 0.0011 6 6 3.0724 3.9076 0.0016 7 6 3.6350 5.1663 0.0016 8 6 5.0147 5.3132 0.0005 9 8 5.5642 6.5561 0.0000 10 6 4.6619 7.6644 0.0012 11 6 5.8381 4.1893 0.0000 12 8 7.1901 4.3368 -0.0016 13 6 7.9731 3.1414 -0.0026 14 6 9.4592 3.5052 -0.0037 15 6 10.2850 2.2445 -0.0054 16 1 9.7984 1.2803 -0.0053 17 6 11.6616 2.3221 -0.0072 18 7 12.3822 1.2220 -0.0082 19 14 12.5031 3.9899 -0.0081 20 1 12.7278 4.4316 1.3918 21 1 13.8077 3.8857 -0.7098 22 1 11.6426 4.9781 -0.7069 23 6 5.2810 2.9244 -0.0045 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9266 0.5551 0.0005 28 1 1.9982 3.7962 0.0020 29 1 3.0001 6.0402 0.0016 30 1 4.0330 7.6218 -0.8880 31 1 4.0352 7.6216 0.8920 32 1 5.2295 8.5949 0.0002 33 1 7.7413 2.5559 -0.8924 34 1 7.7433 2.5558 0.8876 35 1 9.6892 4.0909 -0.8937 36 1 9.6907 4.0904 0.8862 37 1 13.3506 1.2766 -0.0098 38 1 5.9180 2.0524 -0.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747357400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:46 Heat of formation + Delta-G solvation = -36.289317 kcal Electronic energy + Delta-G solvation = -20663.195867 eV Core-core repulsion = 17280.859330 eV Total energy + Delta-G solvation = -3382.336538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47233 -38.35220 -37.83116 -36.91097 -33.90686 -33.27022 -31.00838 -30.38691 -29.41798 -27.47979 -26.41192 -25.26344 -23.51592 -22.34838 -20.59353 -20.35759 -18.40359 -17.61981 -17.23985 -16.47494 -16.03403 -16.00387 -15.45330 -15.37833 -15.15903 -14.65960 -14.48707 -14.27907 -13.98655 -13.14655 -12.98273 -12.60041 -12.53399 -12.36187 -12.17156 -11.93419 -11.75993 -11.26297 -11.16517 -11.03128 -10.84931 -10.19603 -10.07267 -10.03340 -9.86383 -9.77314 -9.33568 -8.63429 -8.61057 -7.62840 -6.12680 -4.13535 0.72013 1.37882 2.33614 2.54709 3.23137 3.30120 3.37289 3.43550 3.62970 3.78574 4.40474 4.55103 4.75144 4.88493 5.05221 5.09211 5.10986 5.15260 5.16977 5.21785 5.26036 5.33987 5.39282 5.43772 5.65151 5.77931 5.91366 5.96880 6.14863 6.24510 6.36853 6.48096 6.60179 6.99919 7.24252 7.26086 7.34813 7.63625 7.89443 8.39333 8.88021 9.47847 10.99801 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.003903 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.639909 B = 7171.970029 C = 9014.558757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.248 6.248 3 N -0.347 5.347 4 C 0.164 3.836 5 C -0.065 4.065 6 C -0.082 4.082 7 C -0.184 4.184 8 C 0.113 3.887 9 O -0.300 6.300 10 C 0.026 3.974 11 C 0.114 3.886 12 O -0.306 6.306 13 C 0.069 3.931 14 C -0.008 4.008 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.143 4.143 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.411 6.814 -0.006 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.262 6.262 3 N -0.094 5.094 4 C -0.045 4.045 5 C -0.066 4.066 6 C -0.102 4.102 7 C -0.203 4.203 8 C 0.066 3.934 9 O -0.213 6.213 10 C -0.070 4.070 11 C 0.067 3.933 12 O -0.220 6.220 13 C -0.005 4.005 14 C -0.046 4.046 15 C -0.564 4.564 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.164 4.164 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.701 7.145 -0.011 23.799 hybrid contribution 0.648 0.026 0.023 0.649 sum -22.053 7.171 0.013 23.189 Atomic orbital electron populations 1.22668 0.78968 1.02308 1.01002 1.89840 1.21922 1.20598 1.93815 1.76640 1.13785 1.03734 1.15255 1.24239 0.91881 0.96829 0.91583 1.17959 0.92064 0.90165 1.06442 1.20942 0.99954 0.90607 0.98719 1.20945 0.92336 0.98800 1.08182 1.18537 0.90640 0.83955 1.00278 1.86226 1.34959 1.11752 1.88361 1.23077 0.94633 0.88172 1.01073 1.18165 0.84502 0.90711 0.99906 1.86258 1.12196 1.35905 1.87597 1.23137 0.92562 0.84288 1.00504 1.19571 0.88431 0.98562 0.98005 1.20844 0.91055 0.92205 1.52338 0.90710 1.24928 0.97259 0.96697 0.94105 1.69893 1.06081 1.27416 1.50235 0.86766 0.79001 0.84793 0.78785 1.20064 1.21228 1.18654 1.21225 0.94362 0.96533 1.04276 0.93328 0.93333 0.88796 0.85711 0.84932 0.84652 0.92747 0.92741 0.88238 0.92380 0.92410 0.95346 0.95775 0.92460 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.41 11.47 101.05 1.16 1.57 16 2 O -0.25 -3.19 11.72 -11.47 -0.13 -3.32 16 3 N -0.35 -4.57 10.46 32.11 0.34 -4.23 16 4 C 0.16 2.05 10.90 -14.79 -0.16 1.88 16 5 C -0.06 -0.84 5.87 -105.03 -0.62 -1.45 16 6 C -0.08 -0.98 9.57 -39.18 -0.37 -1.35 16 7 C -0.18 -2.15 9.01 -39.53 -0.36 -2.50 16 8 C 0.11 1.65 6.71 -38.99 -0.26 1.39 16 9 O -0.30 -4.37 10.27 -34.10 -0.35 -4.72 16 10 C 0.03 0.23 9.81 101.05 0.99 1.22 16 11 C 0.11 1.88 6.69 -39.19 -0.26 1.62 16 12 O -0.31 -5.98 9.91 -34.43 -0.34 -6.32 16 13 C 0.07 1.39 4.68 37.16 0.17 1.56 16 14 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 15 C -0.53 -14.68 9.66 -34.44 -0.33 -15.02 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 19 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 23 C -0.14 -2.05 8.77 -39.05 -0.34 -2.39 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.13 1.41 7.54 -52.49 -0.40 1.02 16 29 H 0.14 1.17 6.27 -52.48 -0.33 0.84 16 30 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 31 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 34 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 35 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 36 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.15 1.98 6.29 -52.49 -0.33 1.65 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -32.73 329.98 -5.13 -37.86 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.11 Total: -2.89 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.60 Total: -11.81 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 1.11 Total: -30.65 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.83 Total: -14.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.73 -5.13 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747357400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.566 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds