Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41600 * 114.00004 * 2 1 4 4 C 1.29400 * 120.00051 * 179.97438 * 3 2 1 5 5 C 1.47520 * 119.99946 * 180.02562 * 4 3 2 6 6 C 1.39670 * 120.07884 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99823 * 180.02562 * 6 5 4 8 8 C 1.38751 * 120.15522 * 0.02562 * 7 6 5 9 9 O 1.35899 * 119.92619 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99946 * 0.02562 * 9 8 7 11 11 C 1.39327 * 120.15173 * 359.97438 * 8 7 6 12 12 O 1.36004 * 120.00096 * 179.97438 * 11 8 7 13 13 C 1.42903 * 116.99787 * 180.02562 * 12 11 8 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99711 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00219 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46794 * 90.00022 * 19 17 15 21 21 H 1.48502 * 109.47140 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.46982 * 330.00118 * 19 17 15 23 23 C 1.38213 * 120.00048 * 0.24000 * 11 8 7 24 24 H 1.08993 * 109.46907 * 299.99717 * 1 2 3 25 25 H 1.09006 * 109.46686 * 59.99906 * 1 2 3 26 26 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99648 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.00186 * 0.02562 * 6 5 4 29 29 H 1.08008 * 119.92064 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47376 * 300.00348 * 10 9 8 31 31 H 1.08998 * 109.46803 * 60.00520 * 10 9 8 32 32 H 1.08994 * 109.47096 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47382 * 60.00075 * 13 12 11 34 34 H 1.09001 * 109.46938 * 300.00061 * 13 12 11 35 35 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 36 36 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 37 37 H 0.97000 * 119.99684 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.07770 * 179.72072 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2919 1.4289 0.0005 5 6 3.8919 2.7765 0.0011 6 6 3.0724 3.9076 0.0016 7 6 3.6350 5.1663 0.0016 8 6 5.0147 5.3132 0.0005 9 8 5.5642 6.5561 0.0000 10 6 4.6619 7.6644 0.0012 11 6 5.8381 4.1893 0.0000 12 8 7.1901 4.3368 -0.0016 13 6 7.9731 3.1414 -0.0026 14 6 9.4592 3.5052 -0.0037 15 6 10.2850 2.2445 -0.0054 16 1 9.7984 1.2803 -0.0053 17 6 11.6616 2.3221 -0.0072 18 7 12.3822 1.2220 -0.0082 19 14 12.5031 3.9899 -0.0081 20 1 12.7278 4.4316 1.3918 21 1 13.8077 3.8857 -0.7098 22 1 11.6426 4.9781 -0.7069 23 6 5.2810 2.9244 -0.0045 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9266 0.5551 0.0005 28 1 1.9982 3.7962 0.0020 29 1 3.0001 6.0402 0.0016 30 1 4.0330 7.6218 -0.8880 31 1 4.0352 7.6216 0.8920 32 1 5.2295 8.5949 0.0002 33 1 7.7413 2.5559 -0.8924 34 1 7.7433 2.5558 0.8876 35 1 9.6892 4.0909 -0.8937 36 1 9.6907 4.0904 0.8862 37 1 13.3506 1.2766 -0.0098 38 1 5.9180 2.0524 -0.0095 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747357400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -57.132463 kcal Electronic energy + Delta-G solvation = -20664.099694 eV Core-core repulsion = 17280.859330 eV Total energy + Delta-G solvation = -3383.240364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.56051 -39.52525 -38.82827 -37.92783 -35.44549 -34.75198 -32.82079 -31.43802 -30.57750 -28.26310 -27.28788 -26.95070 -24.50510 -23.72884 -22.11388 -21.51683 -19.56792 -18.97682 -18.51734 -17.89900 -17.18150 -17.07841 -16.50900 -16.36581 -16.28888 -16.19920 -15.70041 -15.35188 -15.20672 -14.64710 -14.40067 -14.01231 -13.60823 -13.34343 -13.32407 -13.00818 -12.95551 -12.60457 -12.52761 -12.25048 -11.99945 -11.99072 -11.79943 -11.56299 -11.42379 -11.00358 -10.79868 -10.74322 -9.69275 -8.73552 -8.33102 -6.39189 -0.29087 0.33250 1.33227 1.37278 1.38738 1.51745 1.66358 2.30450 2.34912 2.35283 2.75232 3.02246 3.62586 3.77720 3.98645 4.06226 4.22349 4.27603 4.28877 4.42613 4.45620 4.46261 4.51494 4.55925 4.66442 4.70856 4.76765 4.78795 4.93121 5.12961 5.13930 5.27411 5.33941 5.43914 5.52749 5.62339 6.15065 6.20163 6.41800 6.63717 6.66783 7.26104 8.82520 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.003903 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.639909 B = 7171.970029 C = 9014.558757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.268 6.268 3 N -0.355 5.355 4 C 0.161 3.839 5 C -0.069 4.069 6 C -0.072 4.072 7 C -0.171 4.171 8 C 0.107 3.893 9 O -0.332 6.332 10 C 0.015 3.985 11 C 0.074 3.926 12 O -0.326 6.326 13 C 0.082 3.918 14 C -0.006 4.006 15 C -0.534 4.534 16 H 0.045 0.955 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.946 3.054 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.251 1.251 23 C -0.142 4.142 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.172 0.828 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.270 0.730 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.555 8.619 0.019 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.282 6.282 3 N -0.102 5.102 4 C -0.048 4.048 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.189 4.189 8 C 0.060 3.940 9 O -0.245 6.245 10 C -0.079 4.079 11 C 0.029 3.971 12 O -0.241 6.241 13 C 0.008 3.992 14 C -0.044 4.044 15 C -0.572 4.572 16 H 0.064 0.936 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.769 3.231 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.175 1.175 23 C -0.163 4.163 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.137 0.863 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.189 0.811 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -24.884 8.963 0.016 26.449 hybrid contribution 1.104 -0.562 0.016 1.238 sum -23.780 8.401 0.031 25.220 Atomic orbital electron populations 1.22948 0.76997 1.04162 1.01483 1.89826 1.24095 1.20416 1.93868 1.76571 1.13916 1.04395 1.15274 1.24283 0.92064 0.96949 0.91535 1.18017 0.91545 0.90961 1.06510 1.21228 1.00720 0.90330 0.96947 1.21272 0.91347 0.99967 1.06315 1.18743 0.91424 0.83790 1.00080 1.86183 1.37372 1.12612 1.88368 1.23430 0.94827 0.86906 1.02772 1.18510 0.83249 0.92402 1.02977 1.86159 1.14072 1.35029 1.88837 1.22738 0.90696 0.84765 1.01017 1.19426 0.90725 0.96525 0.97682 1.21126 0.91738 0.92681 1.51643 0.93648 1.25847 0.98110 1.00669 0.93761 1.70023 1.06610 1.29873 1.51749 0.85716 0.77992 0.79996 0.79368 1.19023 1.20524 1.17517 1.21241 0.95139 0.95934 1.03962 0.92817 0.92824 0.86308 0.84877 0.83154 0.81101 0.90957 0.90944 0.86864 0.91965 0.91956 0.95622 0.95713 0.92148 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.47 113.37 1.30 1.92 16 2 O -0.27 -6.49 11.72 -38.78 -0.45 -6.94 16 3 N -0.35 -8.77 10.46 -52.31 -0.55 -9.32 16 4 C 0.16 3.84 10.90 87.50 0.95 4.79 16 5 C -0.07 -1.69 5.87 -20.13 -0.12 -1.81 16 6 C -0.07 -1.53 9.57 22.53 0.22 -1.32 16 7 C -0.17 -3.49 9.01 22.31 0.20 -3.29 16 8 C 0.11 2.98 6.71 22.65 0.15 3.13 16 9 O -0.33 -9.21 10.27 -78.37 -0.80 -10.01 16 10 C 0.01 0.22 9.81 113.37 1.11 1.33 16 11 C 0.07 2.44 6.69 22.53 0.15 2.59 16 12 O -0.33 -12.87 9.91 -79.56 -0.79 -13.66 16 13 C 0.08 3.36 4.68 71.98 0.34 3.70 16 14 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 15 C -0.53 -30.50 9.66 25.60 0.25 -30.26 16 16 H 0.05 2.78 7.99 -2.91 -0.02 2.75 16 17 C 0.01 0.83 5.47 84.66 0.46 1.29 16 18 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 19 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 23 C -0.14 -4.04 8.77 22.62 0.20 -3.84 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.15 2.70 7.54 -2.91 -0.02 2.68 16 29 H 0.17 2.20 6.27 -2.91 -0.02 2.18 16 30 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 2.43 7.65 -2.39 -0.02 2.41 16 34 H 0.06 2.43 7.67 -2.39 -0.02 2.41 16 35 H 0.03 1.24 7.20 -2.39 -0.02 1.23 16 36 H 0.02 1.18 7.57 -2.39 -0.02 1.16 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.15 4.02 6.29 -2.91 -0.02 4.00 16 Total: -1.00 -71.39 329.98 5.94 -65.45 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.00 Total: 8.06 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 5.34 Total: -21.94 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.25 Total: -67.32 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -2.05 Total: -30.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -71.39 5.94 -65.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747357400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.319 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds