Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35703 * 117.00007 * 2 1 4 4 C 1.39254 * 119.84176 * 359.72716 * 3 2 1 5 5 C 1.36492 * 120.43220 * 179.71838 * 4 3 2 6 6 C 1.39930 * 120.09697 * 0.55195 * 5 4 3 7 7 C 1.47054 * 120.15896 * 179.70310 * 6 5 4 8 8 O 1.21551 * 120.00065 * 185.89601 * 7 6 5 9 9 O 1.34800 * 119.99738 * 5.88814 * 7 6 5 10 10 C 1.45198 * 116.99774 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47314 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47319 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99664 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99990 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00338 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99962 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47177 * 59.99924 * 17 15 13 19 19 H 1.48495 * 109.47467 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47464 * 300.00034 * 17 15 13 21 21 C 1.40583 * 119.68677 * 359.72483 * 6 5 4 22 22 N 1.38853 * 120.21814 * 180.02562 * 21 6 5 23 23 C 1.38609 * 119.84471 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46986 * 60.00333 * 1 2 3 25 25 H 1.09004 * 109.46844 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47679 * 300.00033 * 1 2 3 27 27 H 1.08000 * 119.78257 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.95238 * 180.25532 * 5 4 3 29 29 H 1.09001 * 109.46997 * 299.99778 * 10 9 7 30 30 H 1.08992 * 109.47733 * 60.00149 * 10 9 7 31 31 H 1.09001 * 109.46880 * 299.99674 * 11 10 9 32 32 H 1.09005 * 109.47153 * 59.99462 * 11 10 9 33 33 H 1.09001 * 109.47006 * 299.99750 * 12 11 10 34 34 H 1.09005 * 109.47325 * 59.99720 * 12 11 10 35 35 H 0.96993 * 120.00530 * 180.02562 * 16 15 13 36 36 H 0.96992 * 120.00300 * 174.41918 * 22 21 6 37 37 H 0.97001 * 119.99024 * 354.42397 * 22 21 6 38 38 H 1.08004 * 120.04920 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2834 2.3749 -0.0058 5 6 1.8905 3.5974 0.0000 6 6 3.2869 3.6874 0.0000 7 6 3.9424 5.0038 -0.0004 8 8 5.1506 5.0811 -0.1085 9 8 3.2032 6.1247 0.1189 10 6 3.9171 7.3891 0.1101 11 6 2.9189 8.5394 0.2554 12 6 3.6711 9.8716 0.2468 13 6 2.6878 11.0048 0.3893 14 1 1.6320 10.7955 0.4776 15 6 3.1361 12.3084 0.4069 16 7 4.4219 12.5632 0.2999 17 14 1.9172 13.7130 0.5828 18 1 1.1789 13.5702 1.8633 19 1 2.6473 15.0060 0.5746 20 1 0.9564 13.6793 -0.5490 21 6 4.0603 2.5134 0.0000 22 7 5.4467 2.5899 0.0006 23 6 3.4295 1.2779 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2053 2.3113 -0.0106 28 1 1.2923 4.4965 -0.0004 29 1 4.6227 7.4137 0.9406 30 1 4.4587 7.4941 -0.8299 31 1 2.2130 8.5150 -0.5748 32 1 2.3776 8.4342 1.1957 33 1 4.3767 9.8958 1.0773 34 1 4.2127 9.9771 -0.6933 35 1 4.7374 13.4803 0.3126 36 1 5.9770 1.7819 0.0823 37 1 5.8848 3.4515 -0.0806 38 1 4.0160 0.3710 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767283034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = -130.822996 kcal Electronic energy + Delta-G solvation = -20601.542512 eV Core-core repulsion = 17215.106686 eV Total energy + Delta-G solvation = -3386.435825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82634 -40.81319 -38.90332 -37.60732 -35.98504 -35.17994 -33.68203 -31.92909 -30.08963 -28.89371 -28.07050 -25.56694 -24.44716 -23.25347 -22.19917 -21.89281 -19.24785 -18.94219 -18.58928 -17.96447 -17.77780 -17.62212 -16.66856 -16.56375 -16.47925 -16.12458 -15.67557 -15.23247 -14.59953 -14.36661 -14.18762 -14.16314 -13.87343 -13.66038 -13.56537 -13.09226 -12.79766 -12.52750 -12.40718 -12.38999 -12.06600 -11.88852 -11.74010 -11.46115 -11.39263 -11.36843 -11.21608 -10.56455 -9.47241 -8.74649 -8.21344 -6.33048 -0.18452 0.55390 1.41679 1.45183 1.49393 1.52889 1.68064 2.21121 2.42000 2.79039 2.98777 3.12417 3.70057 3.78427 4.01191 4.06154 4.08439 4.20958 4.38365 4.41559 4.47856 4.49803 4.73115 4.80428 4.82122 4.90429 5.04192 5.07800 5.21202 5.32938 5.36844 5.48277 5.56019 5.64125 5.80284 6.19242 6.31759 6.40374 6.71422 6.82809 6.91428 7.36424 8.90760 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.002794 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.961616 B =10017.400138 C =10907.610474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.211 3.789 4 C -0.272 4.272 5 C 0.025 3.975 6 C -0.279 4.279 7 C 0.514 3.486 8 O -0.553 6.553 9 O -0.351 6.351 10 C 0.079 3.921 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.314 3.686 22 N -0.847 5.847 23 C -0.260 4.260 24 H 0.069 0.931 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.160 0.840 28 H 0.146 0.854 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.067 0.933 33 H -0.004 1.004 34 H -0.004 1.004 35 H 0.265 0.735 36 H 0.410 0.590 37 H 0.412 0.588 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.456 -27.382 -0.589 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.162 3.838 4 C -0.293 4.293 5 C 0.006 3.994 6 C -0.286 4.286 7 C 0.365 3.635 8 O -0.447 6.447 9 O -0.267 6.267 10 C 0.006 3.994 11 C -0.131 4.131 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.190 1.190 21 C 0.200 3.800 22 N -0.393 5.393 23 C -0.283 4.283 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.088 0.912 27 H 0.177 0.823 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.240 0.760 37 H 0.253 0.747 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.893 -27.313 -0.627 28.177 hybrid contribution 0.350 1.273 0.048 1.321 sum -6.542 -26.040 -0.579 26.856 Atomic orbital electron populations 1.23476 0.75725 1.05941 1.02901 1.86020 1.24071 1.26459 1.86968 1.19080 0.91705 0.84717 0.88252 1.20979 1.01690 0.90910 1.15678 1.20901 0.91749 0.99028 0.87743 1.18504 0.94910 0.87660 1.27509 1.21382 0.85045 0.85481 0.71571 1.90433 1.16571 1.87261 1.50458 1.86529 1.41669 1.15272 1.83267 1.23135 0.95194 0.79318 1.01779 1.21454 0.97557 0.91579 1.02481 1.18926 0.95278 0.91439 0.95427 1.21601 0.94318 0.91916 1.50336 0.91606 1.26020 0.97178 1.02099 0.94657 1.70092 1.15339 1.20779 1.51220 0.85437 0.78572 0.77353 0.79313 1.19017 1.20955 1.18989 1.17431 0.84857 0.91421 0.86338 1.43453 1.02953 1.14689 1.78252 1.19772 0.92438 0.96239 1.19883 0.91194 0.86002 0.91193 0.82294 0.83618 0.91954 0.91903 0.91389 0.91455 0.98544 0.98523 0.92675 0.75994 0.74713 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.80 113.37 1.11 1.21 16 2 O -0.32 -5.00 10.48 -90.23 -0.95 -5.94 16 3 C 0.21 3.88 6.69 22.60 0.15 4.03 16 4 C -0.27 -4.77 8.96 22.11 0.20 -4.57 16 5 C 0.02 0.54 9.55 22.27 0.21 0.76 16 6 C -0.28 -7.54 5.89 -19.98 -0.12 -7.66 16 7 C 0.51 17.02 7.86 70.13 0.55 17.58 16 8 O -0.55 -19.89 13.43 19.67 0.26 -19.63 16 9 O -0.35 -12.18 9.48 -57.12 -0.54 -12.72 16 10 C 0.08 3.03 5.48 71.98 0.39 3.43 16 11 C -0.09 -3.92 5.53 30.59 0.17 -3.75 16 12 C 0.03 1.41 4.97 29.85 0.15 1.56 16 13 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 17 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 C 0.31 7.38 6.76 38.72 0.26 7.64 16 22 N -0.85 -18.09 8.93 -50.95 -0.45 -18.55 16 23 C -0.26 -5.07 9.82 22.47 0.22 -4.85 16 24 H 0.07 0.41 7.63 -2.39 -0.02 0.39 16 25 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 27 H 0.16 1.83 6.26 -2.91 -0.02 1.82 16 28 H 0.15 3.02 7.61 -2.91 -0.02 2.99 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 35 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.41 5.92 8.84 -92.71 -0.82 5.10 16 37 H 0.41 10.63 5.34 -94.71 -0.51 10.12 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -69.38 326.79 4.40 -64.99 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.23 Total: 17.63 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 4.00 Total: -14.98 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -0.17 Total: -75.47 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -1.22 Total: -38.30 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.38 4.40 -64.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767283034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.835 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds