Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 O 1.42904 * 109.47297 * 0.02562 * 9 8 7 11 11 N 1.41594 * 114.00362 * 179.97438 * 10 9 8 12 12 C 1.34772 * 120.00326 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00377 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47243 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.46927 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00058 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46683 * 60.00085 * 20 18 16 22 22 H 1.48499 * 109.47140 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46765 * 300.00471 * 20 18 16 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09008 * 109.47163 * 120.00093 * 9 8 7 32 32 H 1.08997 * 109.47559 * 240.00556 * 9 8 7 33 33 H 0.97001 * 120.00038 * 0.02562 * 11 10 9 34 34 H 1.08991 * 109.46944 * 299.99883 * 14 12 11 35 35 H 1.09000 * 109.46951 * 59.99952 * 14 12 11 36 36 H 1.08996 * 109.47306 * 300.00415 * 15 14 12 37 37 H 1.09000 * 109.46974 * 60.00226 * 15 14 12 38 38 H 0.97005 * 119.99745 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 8 5.6426 0.3586 -0.0005 11 7 6.5068 -0.7630 0.0005 12 6 7.8427 -0.5845 -0.0001 13 8 8.3046 0.5369 -0.0020 14 6 8.7625 -1.7782 0.0003 15 6 10.2164 -1.3018 -0.0012 16 6 11.1362 -2.4956 -0.0002 17 1 10.7249 -3.4941 0.0010 18 6 12.5028 -2.3128 -0.0018 19 7 13.0037 -1.0968 -0.0037 20 14 13.6430 -3.7926 -0.0012 21 1 13.3893 -4.6133 -1.2125 22 1 15.0542 -3.3302 -0.0025 23 1 13.3917 -4.6105 1.2125 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 4.0219 -0.5621 0.8903 32 1 4.0213 -0.5632 -0.8898 33 1 6.1374 -1.6599 0.0008 34 1 8.5776 -2.3790 0.8907 35 1 8.5769 -2.3802 -0.8892 36 1 10.4011 -0.7012 -0.8918 37 1 10.4023 -0.6996 0.8881 38 1 13.9651 -0.9683 -0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812546636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = -50.150479 kcal Electronic energy + Delta-G solvation = -20447.522142 eV Core-core repulsion = 17064.584539 eV Total energy + Delta-G solvation = -3382.937603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56025 -38.97110 -37.84477 -36.83161 -33.46236 -32.91108 -31.47624 -30.41240 -30.33105 -27.72282 -26.31662 -25.43598 -22.44047 -21.81652 -21.77386 -19.77074 -18.35664 -17.86289 -16.92549 -16.28151 -16.27645 -16.02294 -15.59662 -15.49315 -14.64834 -14.53965 -14.45060 -14.09455 -13.88705 -13.42723 -13.00650 -12.60745 -12.36627 -12.34976 -12.19101 -11.57487 -11.46916 -11.20358 -11.15852 -11.14493 -10.89860 -10.62813 -9.97761 -9.67724 -9.24162 -9.11007 -9.09371 -8.62318 -8.41372 -8.31394 -5.95787 -4.00772 1.03181 1.16426 2.13473 2.90160 3.26009 3.35442 3.40193 3.41786 3.47808 4.34295 4.46855 4.48551 4.66455 4.75045 4.77359 4.86394 4.99002 5.09603 5.11890 5.21579 5.24443 5.39116 5.44298 5.52872 5.73362 5.99869 6.15397 6.15834 6.16466 6.30728 6.53453 6.79585 7.01922 7.09860 7.71080 7.75020 7.84238 8.06452 8.36952 8.80959 9.07432 9.62712 11.15082 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.040382 B = 0.002599 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.212801 B =10772.320807 C =11434.484031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.132 3.868 4 C -0.209 4.209 5 C -0.081 4.081 6 C -0.154 4.154 7 C -0.058 4.058 8 C -0.115 4.115 9 C 0.087 3.913 10 O -0.152 6.152 11 N -0.607 5.607 12 C 0.520 3.480 13 O -0.515 6.515 14 C -0.115 4.115 15 C 0.037 3.963 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.403 0.597 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.185 3.404 0.011 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.099 4.099 6 C -0.172 4.172 7 C -0.076 4.076 8 C -0.117 4.117 9 C 0.010 3.990 10 O -0.156 6.156 11 N -0.313 5.313 12 C 0.309 3.691 13 O -0.387 6.387 14 C -0.155 4.155 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.243 0.757 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.499 4.353 0.009 27.842 hybrid contribution -0.230 -1.106 0.000 1.130 sum -27.729 3.247 0.010 27.918 Atomic orbital electron populations 1.23067 0.78218 1.04057 1.01385 1.86063 1.21524 1.26763 1.88669 1.18633 0.90912 0.84547 0.97208 1.21133 0.99862 0.92154 1.09637 1.20985 0.94747 0.96953 0.97227 1.21145 0.93793 0.98708 1.03557 1.21042 1.01272 0.90534 0.94783 1.18807 0.89857 0.94946 1.08072 1.21314 0.80788 0.95099 1.01820 1.90512 1.13251 1.14412 1.97414 1.48166 1.01877 1.00978 1.80230 1.21977 0.78888 0.93326 0.74942 1.90695 1.74639 1.25837 1.47566 1.21901 0.97118 0.93394 1.03088 1.18952 0.85547 0.96589 0.99018 1.21144 0.91166 0.92588 1.51826 0.92512 1.25026 0.98352 0.95737 0.95242 1.69991 1.12453 1.20392 1.49862 0.86626 0.79786 0.82812 0.78541 1.20232 1.21291 1.20235 0.88124 0.92585 0.92593 0.85299 0.85695 0.85465 0.83914 0.90998 0.90992 0.75747 0.89659 0.89661 0.95511 0.95516 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 9.92 -19.42 -0.19 -3.22 16 3 C 0.13 1.41 6.66 -39.22 -0.26 1.15 16 4 C -0.21 -1.87 9.04 -39.43 -0.36 -2.22 16 5 C -0.08 -0.72 10.04 -39.60 -0.40 -1.11 16 6 C -0.15 -1.59 10.04 -39.56 -0.40 -1.98 16 7 C -0.06 -0.73 9.37 -39.61 -0.37 -1.10 16 8 C -0.11 -1.41 5.89 -104.48 -0.62 -2.03 16 9 C 0.09 1.07 6.09 36.00 0.22 1.29 16 10 O -0.15 -2.47 9.59 -29.66 -0.28 -2.75 16 11 N -0.61 -9.55 6.39 31.22 0.20 -9.35 16 12 C 0.52 10.50 7.97 -10.99 -0.09 10.41 16 13 O -0.52 -12.98 16.39 -12.64 -0.21 -13.18 16 14 C -0.11 -2.28 5.64 -27.88 -0.16 -2.44 16 15 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 27 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 28 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.14 2.00 7.00 -52.49 -0.37 1.63 16 31 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.60 8.54 -40.82 -0.35 4.25 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -35.99 332.07 -6.91 -42.91 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.18 Total: 0.29 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.96 Total: -9.60 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.94 Total: -35.98 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.68 Total: -19.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.99 -6.91 -42.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.245 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds