Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 O 1.42904 * 109.47297 * 0.02562 * 9 8 7 11 11 N 1.41594 * 114.00362 * 179.97438 * 10 9 8 12 12 C 1.34772 * 120.00326 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00377 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47243 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.46927 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00185 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00058 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46683 * 60.00085 * 20 18 16 22 22 H 1.48499 * 109.47140 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46765 * 300.00471 * 20 18 16 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09008 * 109.47163 * 120.00093 * 9 8 7 32 32 H 1.08997 * 109.47559 * 240.00556 * 9 8 7 33 33 H 0.97001 * 120.00038 * 0.02562 * 11 10 9 34 34 H 1.08991 * 109.46944 * 299.99883 * 14 12 11 35 35 H 1.09000 * 109.46951 * 59.99952 * 14 12 11 36 36 H 1.08996 * 109.47306 * 300.00415 * 15 14 12 37 37 H 1.09000 * 109.46974 * 60.00226 * 15 14 12 38 38 H 0.97005 * 119.99745 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 8 5.6426 0.3586 -0.0005 11 7 6.5068 -0.7630 0.0005 12 6 7.8427 -0.5845 -0.0001 13 8 8.3046 0.5369 -0.0020 14 6 8.7625 -1.7782 0.0003 15 6 10.2164 -1.3018 -0.0012 16 6 11.1362 -2.4956 -0.0002 17 1 10.7249 -3.4941 0.0010 18 6 12.5028 -2.3128 -0.0018 19 7 13.0037 -1.0968 -0.0037 20 14 13.6430 -3.7926 -0.0012 21 1 13.3893 -4.6133 -1.2125 22 1 15.0542 -3.3302 -0.0025 23 1 13.3917 -4.6105 1.2125 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 4.0219 -0.5621 0.8903 32 1 4.0213 -0.5632 -0.8898 33 1 6.1374 -1.6599 0.0008 34 1 8.5776 -2.3790 0.8907 35 1 8.5769 -2.3802 -0.8892 36 1 10.4011 -0.7012 -0.8918 37 1 10.4023 -0.6996 0.8881 38 1 13.9651 -0.9683 -0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812546636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = -74.477091 kcal Electronic energy + Delta-G solvation = -20448.577023 eV Core-core repulsion = 17064.584539 eV Total energy + Delta-G solvation = -3383.992484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30024 -40.53357 -38.74700 -37.96849 -35.55262 -34.13969 -33.06838 -31.86722 -31.14181 -28.26958 -27.69781 -26.94858 -23.87400 -23.06451 -22.65119 -21.36097 -19.16342 -19.08934 -18.72069 -17.59055 -17.14779 -16.98593 -16.66695 -16.63896 -16.43903 -15.95946 -15.40488 -15.37024 -14.76723 -14.57072 -14.28562 -14.22289 -13.63528 -13.59072 -13.24284 -12.88173 -12.76175 -12.50795 -12.38762 -12.35378 -12.04162 -11.90506 -11.86570 -11.64485 -11.30959 -10.92553 -10.53646 -10.05585 -9.84212 -9.18875 -8.15440 -6.29652 0.23964 0.38696 0.83247 1.45285 1.49744 1.57361 1.64990 2.30185 2.45224 2.69453 3.17920 3.38650 3.66507 3.86360 3.94126 4.04893 4.17036 4.28458 4.28543 4.42001 4.43923 4.47673 4.49286 4.54997 4.71495 4.77246 4.94128 5.03040 5.23958 5.35654 5.50795 5.52627 5.63447 5.75903 5.78442 5.87596 6.17968 6.35976 6.38528 6.88718 7.33614 7.40606 8.97242 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.040382 B = 0.002599 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.212801 B =10772.320807 C =11434.484031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.129 3.871 4 C -0.205 4.205 5 C -0.076 4.076 6 C -0.163 4.163 7 C -0.084 4.084 8 C -0.140 4.140 9 C 0.087 3.913 10 O -0.174 6.174 11 N -0.584 5.584 12 C 0.522 3.478 13 O -0.579 6.579 14 C -0.101 4.101 15 C 0.039 3.961 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.290 1.290 23 H -0.262 1.262 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.161 0.839 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.427 0.573 34 H 0.118 0.882 35 H 0.118 0.882 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.012 1.290 0.014 31.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.083 3.917 4 C -0.223 4.223 5 C -0.094 4.094 6 C -0.181 4.181 7 C -0.102 4.102 8 C -0.142 4.142 9 C 0.011 3.989 10 O -0.179 6.179 11 N -0.289 5.289 12 C 0.312 3.688 13 O -0.456 6.456 14 C -0.141 4.141 15 C 0.002 3.998 16 C -0.579 4.579 17 H 0.100 0.900 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.216 1.216 23 H -0.186 1.186 24 H 0.137 0.863 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.271 0.729 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.410 2.170 0.013 30.487 hybrid contribution 0.450 -0.403 -0.001 0.604 sum -29.960 1.767 0.012 30.012 Atomic orbital electron populations 1.23390 0.76031 1.05746 1.02512 1.86041 1.23783 1.26282 1.88462 1.18691 0.90372 0.85706 0.96887 1.21528 1.01385 0.91423 1.07994 1.21367 0.94108 0.98373 0.95519 1.21349 0.94835 0.98404 1.03533 1.20933 1.00195 0.92006 0.97113 1.18900 0.90984 0.94524 1.09774 1.21503 0.78604 0.95845 1.02973 1.90545 1.15232 1.14645 1.97493 1.47603 1.01079 1.02286 1.77894 1.21893 0.80251 0.92356 0.74345 1.90678 1.76165 1.27993 1.50767 1.21651 0.92773 0.93506 1.06142 1.18744 0.90427 0.95588 0.95078 1.21666 0.91684 0.93743 1.50844 0.90047 1.26162 1.00683 0.99064 0.94676 1.70184 1.12834 1.23443 1.51426 0.85346 0.76676 0.78519 0.79522 1.18597 1.21609 1.18606 0.86344 0.91399 0.91410 0.82201 0.82472 0.84359 0.86792 0.89722 0.89716 0.72874 0.86430 0.86433 0.99711 0.99717 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.62 9.92 -92.39 -0.92 -6.54 16 3 C 0.13 2.56 6.66 22.51 0.15 2.71 16 4 C -0.20 -3.10 9.04 22.37 0.20 -2.90 16 5 C -0.08 -1.17 10.04 22.26 0.22 -0.94 16 6 C -0.16 -3.32 10.04 22.28 0.22 -3.10 16 7 C -0.08 -2.21 9.37 22.25 0.21 -2.00 16 8 C -0.14 -3.44 5.89 -19.77 -0.12 -3.56 16 9 C 0.09 2.11 6.09 71.23 0.43 2.54 16 10 O -0.17 -5.76 9.59 -21.38 -0.20 -5.97 16 11 N -0.58 -18.04 6.39 -173.53 -1.11 -19.15 16 12 C 0.52 21.45 7.97 87.66 0.70 22.15 16 13 O -0.58 -30.87 16.39 14.36 0.24 -30.63 16 14 C -0.10 -3.95 5.64 29.85 0.17 -3.78 16 15 C 0.04 2.19 4.26 29.85 0.13 2.31 16 16 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 17 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 18 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 19 N -0.94 -59.87 13.29 21.45 0.28 -59.58 16 20 Si 0.98 44.05 29.54 68.60 2.03 46.08 16 21 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 26 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 27 H 0.16 1.35 6.30 -2.91 -0.02 1.34 16 28 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.11 3.56 7.00 -2.91 -0.02 3.54 16 31 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.43 8.83 8.54 -92.71 -0.79 8.04 16 34 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 36 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 37 H -0.02 -0.99 8.10 -2.39 -0.02 -1.00 16 38 H 0.26 15.73 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -83.23 332.07 4.72 -78.51 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.28 Total: 12.81 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 4.13 Total: -15.53 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -0.82 Total: -78.73 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.89 Total: -43.15 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -83.23 4.72 -78.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812546636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.033 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds