Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.47045 * 269.97896 * 8 7 6 10 10 C 1.34640 * 116.99947 * 180.02562 * 9 8 7 11 11 O 1.21512 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99614 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47014 * 180.02562 * 13 12 10 15 15 C 1.50690 * 109.47208 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00471 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00230 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00104 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47063 * 59.99554 * 19 17 15 21 21 H 1.48500 * 109.47056 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46883 * 300.00016 * 19 17 15 23 23 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 29 29 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 30 30 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 31 31 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 32 32 H 0.96999 * 120.00063 * 0.02562 * 12 10 9 33 33 H 1.09006 * 109.47233 * 299.99504 * 13 12 10 34 34 H 1.08996 * 109.47640 * 59.99974 * 13 12 10 35 35 H 1.08997 * 109.46760 * 299.99708 * 14 13 12 36 36 H 1.08996 * 109.47118 * 59.99434 * 14 13 12 37 37 H 0.96994 * 120.00402 * 180.02562 * 18 17 15 38 38 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 8 6.0441 2.6239 -1.3688 10 6 7.3770 2.6952 -1.5451 11 8 8.1161 2.7344 -0.5814 12 7 7.8915 2.7220 -2.7905 13 6 9.3418 2.7990 -2.9824 14 6 9.6581 2.8158 -4.4793 15 6 11.1499 2.8956 -4.6766 16 1 11.8069 2.9312 -3.8201 17 6 11.6763 2.9232 -5.9506 18 7 10.8765 2.8793 -6.9937 19 14 13.5256 3.0214 -6.1953 20 1 14.1716 1.8418 -5.5657 21 1 13.8326 3.0366 -7.6482 22 1 14.0428 4.2633 -5.5665 23 6 3.4311 1.2849 -0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 0.0011 29 1 3.7922 4.6381 0.0002 30 1 5.8756 3.5067 0.5138 31 1 5.9714 1.7293 0.5143 32 1 7.3015 2.6904 -3.5598 33 1 9.7215 3.7106 -2.5209 34 1 9.8160 1.9332 -2.5202 35 1 9.2784 1.9044 -4.9411 36 1 9.1840 3.6818 -4.9411 37 1 11.2467 2.8983 -7.8900 38 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859103263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -103.757993 kcal Electronic energy + Delta-G solvation = -20233.169151 eV Core-core repulsion = 16847.906952 eV Total energy + Delta-G solvation = -3385.262199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53681 -39.96307 -37.96099 -36.42187 -34.82071 -32.91446 -32.17790 -30.75506 -29.64430 -27.74553 -26.52626 -24.72655 -22.86358 -21.73623 -21.21820 -20.71536 -18.38358 -18.14425 -16.77605 -16.62582 -16.37098 -16.08749 -15.99448 -15.93369 -14.61811 -14.53402 -14.23347 -14.04071 -13.73913 -13.66426 -13.09269 -12.71207 -12.61652 -12.28664 -12.21688 -11.81675 -11.42112 -11.24015 -11.14356 -11.03831 -10.66646 -10.54291 -10.33903 -10.28655 -9.65104 -9.33346 -9.23310 -8.62322 -8.50996 -8.39088 -6.09599 -4.13019 0.84481 1.15587 2.57606 2.93802 3.21872 3.31687 3.35580 3.38753 3.52889 4.34118 4.42039 4.45733 4.69820 4.73859 4.77158 4.85802 4.94829 5.04859 5.10291 5.16932 5.27365 5.35210 5.42160 5.70829 5.95960 6.10354 6.18660 6.28231 6.29892 6.40329 6.54401 6.69784 6.84657 7.06373 7.50260 7.59745 7.87762 7.93745 8.25575 8.75156 8.92760 9.51746 11.01958 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.002454 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.445954 B =11407.642851 C =11680.774993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.200 4.200 5 C -0.084 4.084 6 C -0.130 4.130 7 C -0.055 4.055 8 C 0.129 3.871 9 O -0.370 6.370 10 C 0.640 3.360 11 O -0.582 6.582 12 N -0.699 5.699 13 C 0.138 3.862 14 C 0.012 3.988 15 C -0.523 4.523 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.125 4.125 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.405 0.595 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.602 -1.576 14.027 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.077 3.923 4 C -0.219 4.219 5 C -0.102 4.102 6 C -0.148 4.148 7 C -0.055 4.055 8 C 0.054 3.946 9 O -0.285 6.285 10 C 0.392 3.608 11 O -0.472 6.472 12 N -0.357 5.357 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.144 4.144 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.239 0.761 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.182 -1.758 14.351 26.478 hybrid contribution 0.417 0.181 -0.533 0.700 sum -21.765 -1.577 13.818 25.829 Atomic orbital electron populations 1.23063 0.78324 1.04045 1.01332 1.86090 1.21419 1.26788 1.88754 1.18950 0.92156 0.84291 0.96918 1.21295 1.00093 0.92430 1.08045 1.20934 0.94402 0.97126 0.97744 1.21047 0.93798 0.98142 1.01847 1.19342 0.93793 0.92746 0.99620 1.21601 0.88939 1.03734 0.80321 1.86296 1.23321 1.87367 1.31477 1.18277 0.80407 0.76933 0.85184 1.90963 1.59636 1.56667 1.39885 1.45234 1.10074 1.76010 1.04368 1.21826 0.74277 1.01108 1.01090 1.19350 0.97492 0.98203 0.87470 1.20975 0.91194 1.51569 0.92424 0.92176 1.24998 0.98375 0.94942 0.95955 1.69946 1.34921 1.50042 0.98283 0.86545 0.85047 0.78806 0.76972 1.20086 1.21247 1.20087 1.20354 0.91479 0.98293 1.04245 0.88162 0.92664 0.92575 0.85361 0.85391 0.85365 0.90017 0.90135 0.76093 0.92205 0.92195 0.95660 0.95673 0.92728 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.16 10.50 -19.44 -0.20 -3.36 16 3 C 0.12 1.28 6.69 -39.22 -0.26 1.02 16 4 C -0.20 -1.75 9.04 -39.43 -0.36 -2.11 16 5 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 6 C -0.13 -1.30 9.70 -39.56 -0.38 -1.68 16 7 C -0.05 -0.63 5.52 -104.65 -0.58 -1.20 16 8 C 0.13 1.65 5.59 36.01 0.20 1.85 16 9 O -0.37 -5.86 10.25 -40.33 -0.41 -6.27 16 10 C 0.64 11.89 8.75 54.06 0.47 12.36 16 11 O -0.58 -12.29 16.13 -19.28 -0.31 -12.60 16 12 N -0.70 -13.01 5.56 -65.27 -0.36 -13.37 16 13 C 0.14 2.94 5.61 -4.04 -0.02 2.92 16 14 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 15 C -0.52 -14.42 9.11 -34.45 -0.31 -14.73 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.13 -1.42 9.64 -39.44 -0.38 -1.80 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.25 7.67 -51.93 -0.40 -0.15 16 26 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 27 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 28 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.40 6.76 8.58 -40.82 -0.35 6.41 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -32.43 333.93 -7.05 -39.48 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.24 Total: 1.75 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.27 Total: -1.61 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.37 Total: -38.71 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.93 Total: -22.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.43 -7.05 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859103263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.277 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds