Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.47045 * 269.97896 * 8 7 6 10 10 C 1.34640 * 116.99947 * 180.02562 * 9 8 7 11 11 O 1.21512 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99614 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47014 * 180.02562 * 13 12 10 15 15 C 1.50690 * 109.47208 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00471 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00230 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00104 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47063 * 59.99554 * 19 17 15 21 21 H 1.48500 * 109.47056 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46883 * 300.00016 * 19 17 15 23 23 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 29 29 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 30 30 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 31 31 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 32 32 H 0.96999 * 120.00063 * 0.02562 * 12 10 9 33 33 H 1.09006 * 109.47233 * 299.99504 * 13 12 10 34 34 H 1.08996 * 109.47640 * 59.99974 * 13 12 10 35 35 H 1.08997 * 109.46760 * 299.99708 * 14 13 12 36 36 H 1.08996 * 109.47118 * 59.99434 * 14 13 12 37 37 H 0.96994 * 120.00402 * 180.02562 * 18 17 15 38 38 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 8 6.0441 2.6239 -1.3688 10 6 7.3770 2.6952 -1.5451 11 8 8.1161 2.7344 -0.5814 12 7 7.8915 2.7220 -2.7905 13 6 9.3418 2.7990 -2.9824 14 6 9.6581 2.8158 -4.4793 15 6 11.1499 2.8956 -4.6766 16 1 11.8069 2.9312 -3.8201 17 6 11.6763 2.9232 -5.9506 18 7 10.8765 2.8793 -6.9937 19 14 13.5256 3.0214 -6.1953 20 1 14.1716 1.8418 -5.5657 21 1 13.8326 3.0366 -7.6482 22 1 14.0428 4.2633 -5.5665 23 6 3.4311 1.2849 -0.0001 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 0.0011 29 1 3.7922 4.6381 0.0002 30 1 5.8756 3.5067 0.5138 31 1 5.9714 1.7293 0.5143 32 1 7.3015 2.6904 -3.5598 33 1 9.7215 3.7106 -2.5209 34 1 9.8160 1.9332 -2.5202 35 1 9.2784 1.9044 -4.9411 36 1 9.1840 3.6818 -4.9411 37 1 11.2467 2.8983 -7.8900 38 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859103263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -124.948123 kcal Electronic energy + Delta-G solvation = -20234.088024 eV Core-core repulsion = 16847.906952 eV Total energy + Delta-G solvation = -3386.181072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60633 -41.03104 -38.81755 -37.72705 -36.51527 -34.88494 -33.07728 -31.63847 -31.34256 -28.35318 -27.56699 -26.52759 -23.61455 -23.32083 -22.41804 -22.07717 -19.82792 -18.97964 -18.51092 -17.83545 -17.55845 -17.15239 -16.90887 -16.65611 -16.51447 -15.71196 -15.68186 -15.34810 -14.85677 -14.53089 -14.27175 -13.98767 -13.92166 -13.47118 -13.24623 -12.92514 -12.84907 -12.58922 -12.53367 -12.26575 -12.03829 -11.91296 -11.83144 -11.70942 -11.60674 -11.37386 -10.59702 -10.17032 -10.02030 -9.23940 -8.22712 -6.33500 0.02252 0.41174 1.28850 1.44735 1.46512 1.54753 1.71413 2.32124 2.42305 2.70714 3.12368 3.31394 3.70229 3.78884 3.96685 4.12229 4.21058 4.31185 4.33801 4.40458 4.43708 4.47276 4.50562 4.67130 4.74253 4.81640 4.95676 5.06327 5.23853 5.32592 5.39289 5.45837 5.51336 5.57234 5.70736 5.78277 6.14842 6.40989 6.43150 6.79775 7.27630 7.35779 8.89142 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.002454 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.445954 B =11407.642851 C =11680.774993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.111 3.889 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.138 4.138 7 C -0.069 4.069 8 C 0.125 3.875 9 O -0.366 6.366 10 C 0.646 3.354 11 O -0.608 6.608 12 N -0.696 5.696 13 C 0.157 3.843 14 C 0.021 3.979 15 C -0.546 4.546 16 H 0.063 0.937 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.267 1.267 23 C -0.146 4.146 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.716 -1.023 14.581 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.065 3.935 4 C -0.214 4.214 5 C -0.099 4.099 6 C -0.156 4.156 7 C -0.069 4.069 8 C 0.051 3.949 9 O -0.280 6.280 10 C 0.399 3.601 11 O -0.500 6.500 12 N -0.355 5.355 13 C 0.035 3.965 14 C -0.016 4.016 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.164 4.164 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.174 0.826 28 H 0.177 0.823 29 H 0.157 0.843 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.250 0.750 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.337 -1.209 14.916 27.723 hybrid contribution 0.590 -0.020 -0.661 0.886 sum -22.748 -1.229 14.254 26.873 Atomic orbital electron populations 1.23369 0.76185 1.05632 1.02478 1.86062 1.23721 1.26816 1.88728 1.19097 0.92036 0.85247 0.97077 1.21647 1.01498 0.91758 1.06447 1.21309 0.93982 0.98316 0.96256 1.21283 0.94687 0.98029 1.01639 1.19262 0.92764 0.93514 1.01382 1.21848 0.90156 1.04134 0.78731 1.86312 1.21341 1.86791 1.33590 1.18215 0.81148 0.76258 0.84509 1.90942 1.60588 1.57785 1.40651 1.44971 1.09231 1.76143 1.05109 1.21366 0.75869 1.00715 0.98516 1.19160 0.96321 0.96676 0.89451 1.21413 0.92671 1.51516 0.92840 0.91832 1.25894 1.03291 0.94435 0.95663 1.70059 1.37014 1.50859 0.98753 0.85468 0.79159 0.79189 0.77052 1.19289 1.20779 1.19209 1.20428 0.92418 0.98142 1.05460 0.86568 0.91218 0.91586 0.82592 0.82343 0.84260 0.89260 0.90190 0.74984 0.92512 0.92648 0.97166 0.97066 0.92535 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.46 10.50 -92.48 -0.97 -7.43 16 3 C 0.11 2.22 6.69 22.50 0.15 2.37 16 4 C -0.20 -2.94 9.04 22.37 0.20 -2.74 16 5 C -0.08 -1.18 10.04 22.26 0.22 -0.95 16 6 C -0.14 -2.55 9.70 22.28 0.22 -2.34 16 7 C -0.07 -1.55 5.52 -19.88 -0.11 -1.66 16 8 C 0.13 3.21 5.59 71.24 0.40 3.61 16 9 O -0.37 -11.54 10.25 -55.50 -0.57 -12.11 16 10 C 0.65 23.92 8.75 129.79 1.14 25.06 16 11 O -0.61 -25.65 16.13 19.80 0.32 -25.33 16 12 N -0.70 -25.89 5.56 -590.84 -3.29 -29.17 16 13 C 0.16 6.75 5.61 86.38 0.48 7.23 16 14 C 0.02 1.08 5.09 29.85 0.15 1.23 16 15 C -0.55 -30.20 9.11 25.60 0.23 -29.97 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 19 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 C -0.15 -3.33 9.64 22.36 0.22 -3.11 16 24 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.44 7.67 -2.39 -0.02 0.42 16 26 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 27 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 28 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 29 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 31 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 32 H 0.41 13.82 8.58 -92.71 -0.80 13.03 16 33 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -68.77 333.93 2.95 -65.81 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.27 Total: 16.21 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 4.88 Total: 0.79 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -3.00 Total: -83.35 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.22 Total: -44.87 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.77 2.95 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859103263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.136 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds