Wall clock time and date at job start Wed Apr 15 2020 11:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38714 * 120.14822 * 359.72758 * 3 2 1 5 5 C 1.38060 * 120.08301 * 179.76494 * 4 3 2 6 6 C 1.50693 * 119.80517 * 180.23043 * 5 4 3 7 7 O 1.42902 * 109.47463 * 270.28023 * 6 5 4 8 8 C 1.38547 * 120.38964 * 0.51417 * 5 4 3 9 9 C 1.37788 * 120.30159 * 359.74111 * 8 5 4 10 10 C 1.39709 * 119.90887 * 0.02562 * 9 8 5 11 11 C 1.47529 * 120.19488 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00262 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99721 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99831 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47042 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47044 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00457 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99864 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99928 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99831 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47298 * 60.00079 * 20 18 16 22 22 H 1.48501 * 109.47056 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47443 * 300.00085 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 27 27 H 1.07999 * 119.95750 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.47212 * 30.27799 * 6 5 4 29 29 H 1.08998 * 109.47200 * 150.27773 * 6 5 4 30 30 H 0.96697 * 114.00063 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.84772 * 179.72190 * 8 5 4 32 32 H 1.08003 * 120.04940 * 179.97438 * 9 8 5 33 33 H 0.96992 * 120.00329 * 0.02562 * 13 11 10 34 34 H 1.09003 * 109.46479 * 299.99711 * 14 13 11 35 35 H 1.08995 * 109.47711 * 59.99541 * 14 13 11 36 36 H 1.08998 * 109.46680 * 299.99461 * 15 14 13 37 37 H 1.09002 * 109.47579 * 59.99476 * 15 14 13 38 38 H 0.97000 * 119.99807 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0057 5 6 1.9208 3.6033 -0.0008 6 6 1.0972 4.8653 -0.0018 7 8 0.8369 5.2633 -1.3494 8 6 3.3039 3.6836 -0.0009 9 6 4.0669 2.5363 -0.0005 10 6 3.4442 1.2856 -0.0006 11 6 4.2550 0.0531 -0.0007 12 8 3.7094 -1.0336 -0.0013 13 7 5.6005 0.1316 -0.0003 14 6 6.4057 -1.0923 -0.0010 15 6 7.8911 -0.7256 0.0003 16 6 8.7193 -1.9845 0.0002 17 1 8.2347 -2.9498 -0.0003 18 6 10.0958 -1.9042 0.0007 19 7 10.6858 -0.7289 0.0019 20 14 11.1224 -3.4648 0.0013 21 1 10.8101 -4.2632 -1.2112 22 1 12.5641 -3.1088 0.0025 23 1 10.8091 -4.2630 1.2138 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2139 2.3195 -0.0097 28 1 0.1532 4.6836 0.5122 29 1 1.6439 5.6563 0.5115 30 1 0.3097 6.0703 -1.4263 31 1 3.7862 4.6499 -0.0016 32 1 5.1448 2.6036 -0.0010 33 1 6.0357 0.9984 0.0005 34 1 6.1758 -1.6789 0.8885 35 1 6.1764 -1.6777 -0.8914 36 1 8.1212 -0.1388 -0.8890 37 1 8.1201 -0.1405 0.8910 38 1 11.6542 -0.6724 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907320058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:55 Heat of formation + Delta-G solvation = -104.122235 kcal Electronic energy + Delta-G solvation = -20909.679899 eV Core-core repulsion = 17524.401906 eV Total energy + Delta-G solvation = -3385.277994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60192 -38.64452 -38.06874 -36.51742 -34.75179 -32.89179 -32.06051 -30.32178 -29.50131 -27.69400 -26.61861 -24.57869 -22.58810 -22.16665 -20.95370 -20.12195 -18.13185 -17.83992 -16.98988 -16.63658 -16.22535 -15.85038 -14.98979 -14.95242 -14.74324 -14.68734 -14.61910 -14.38951 -13.46615 -13.30416 -13.13827 -12.84298 -12.43133 -12.25655 -12.02909 -11.76110 -11.29569 -11.16705 -11.11312 -10.98391 -10.62445 -10.48287 -10.26839 -9.73237 -9.40438 -9.14622 -9.13841 -8.49598 -8.37155 -8.19918 -6.06009 -4.08534 0.71893 1.27404 3.00026 3.18568 3.33944 3.37379 3.40658 3.71926 3.85252 4.09745 4.44783 4.49265 4.60393 4.74819 4.89443 4.93057 5.01771 5.02532 5.18226 5.25397 5.30956 5.36954 5.44207 5.63408 5.98501 6.09174 6.28578 6.42059 6.43197 6.52719 6.80313 7.00411 7.20416 7.29174 7.56445 7.66488 7.92634 8.10531 8.32613 8.76946 8.97358 9.55947 11.05656 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.003235 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.729082 B = 8654.348132 C = 9572.673903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.277 6.277 3 C 0.179 3.821 4 C -0.201 4.201 5 C -0.037 4.037 6 C 0.115 3.885 7 O -0.565 6.565 8 C -0.146 4.146 9 C -0.050 4.050 10 C -0.157 4.157 11 C 0.549 3.451 12 O -0.528 6.528 13 N -0.720 5.720 14 C 0.123 3.877 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.133 0.867 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.381 0.619 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.395 0.605 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 13.652 0.946 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.188 6.188 3 C 0.131 3.869 4 C -0.220 4.220 5 C -0.038 4.038 6 C 0.038 3.962 7 O -0.371 6.371 8 C -0.164 4.164 9 C -0.069 4.069 10 C -0.161 4.161 11 C 0.335 3.665 12 O -0.406 6.406 13 N -0.371 5.371 14 C 0.001 3.999 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.229 0.771 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.179 12.168 0.824 24.439 hybrid contribution 0.310 0.358 0.154 0.498 sum -20.869 12.526 0.978 24.359 Atomic orbital electron populations 1.23151 0.79071 1.04257 1.00954 1.86423 1.20443 1.25196 1.86695 1.19005 0.91034 0.84733 0.92174 1.21045 1.00078 0.91380 1.09494 1.19502 0.93785 0.93407 0.97105 1.21017 0.97577 0.93606 0.84016 1.86592 1.76509 1.47974 1.26014 1.20852 0.92753 0.98712 1.04129 1.21255 1.00328 0.90598 0.94672 1.19632 0.90933 0.94651 1.10864 1.17973 0.82503 0.88299 0.77735 1.90790 1.71769 1.28606 1.49450 1.46242 1.05493 1.11239 1.74164 1.21718 0.92652 0.84656 1.00849 1.19323 0.87493 0.97846 0.97832 1.21027 0.91110 0.92540 1.51321 0.92277 1.24994 0.97999 0.96272 0.95018 1.69947 1.09794 1.23225 1.50414 0.86570 0.78904 0.83262 0.78778 1.20111 1.21264 1.20124 0.87982 0.92713 0.92791 0.84935 0.92653 0.92214 0.77219 0.85175 0.84352 0.77088 0.92509 0.92502 0.95918 0.95930 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.28 -4.29 8.57 -40.52 -0.35 -4.64 16 3 C 0.18 2.64 6.70 -38.69 -0.26 2.38 16 4 C -0.20 -2.33 8.67 -39.47 -0.34 -2.67 16 5 C -0.04 -0.40 5.51 -104.58 -0.58 -0.98 16 6 C 0.12 0.85 7.16 36.00 0.26 1.11 16 7 O -0.56 -4.64 13.64 -35.23 -0.48 -5.12 16 8 C -0.15 -1.60 9.67 -39.63 -0.38 -1.98 16 9 C -0.05 -0.63 9.54 -39.20 -0.37 -1.01 16 10 C -0.16 -2.48 5.89 -104.85 -0.62 -3.10 16 11 C 0.55 10.63 7.76 -12.47 -0.10 10.53 16 12 O -0.53 -12.07 15.16 -16.59 -0.25 -12.32 16 13 N -0.72 -13.62 5.51 -61.35 -0.34 -13.96 16 14 C 0.12 2.75 5.61 -4.04 -0.02 2.73 16 15 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 27 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 28 H 0.06 0.31 8.08 -51.92 -0.42 -0.11 16 29 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.38 1.14 9.12 45.56 0.42 1.55 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.51 6.40 -52.48 -0.34 1.17 16 33 H 0.39 6.40 6.50 -40.82 -0.27 6.13 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -35.93 327.63 -6.97 -42.90 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.23 Total: 2.29 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.98 Total: -5.07 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.40 Total: -39.62 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -1.08 Total: -22.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.93 -6.97 -42.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.226 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds