Wall clock time and date at job start Wed Apr 15 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38714 * 120.14822 * 359.72758 * 3 2 1 5 5 C 1.38060 * 120.08301 * 179.76494 * 4 3 2 6 6 C 1.50693 * 119.80517 * 180.23043 * 5 4 3 7 7 O 1.42902 * 109.47463 * 270.28023 * 6 5 4 8 8 C 1.38547 * 120.38964 * 0.51417 * 5 4 3 9 9 C 1.37788 * 120.30159 * 359.74111 * 8 5 4 10 10 C 1.39709 * 119.90887 * 0.02562 * 9 8 5 11 11 C 1.47529 * 120.19488 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00262 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99721 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99831 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47042 * 180.02562 * 14 13 11 16 16 C 1.50695 * 109.47044 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00457 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99864 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99928 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99831 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47298 * 60.00079 * 20 18 16 22 22 H 1.48501 * 109.47056 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47443 * 300.00085 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 27 27 H 1.07999 * 119.95750 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.47212 * 30.27799 * 6 5 4 29 29 H 1.08998 * 109.47200 * 150.27773 * 6 5 4 30 30 H 0.96697 * 114.00063 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.84772 * 179.72190 * 8 5 4 32 32 H 1.08003 * 120.04940 * 179.97438 * 9 8 5 33 33 H 0.96992 * 120.00329 * 0.02562 * 13 11 10 34 34 H 1.09003 * 109.46479 * 299.99711 * 14 13 11 35 35 H 1.08995 * 109.47711 * 59.99541 * 14 13 11 36 36 H 1.08998 * 109.46680 * 299.99461 * 15 14 13 37 37 H 1.09002 * 109.47579 * 59.99476 * 15 14 13 38 38 H 0.97000 * 119.99807 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0057 5 6 1.9208 3.6033 -0.0008 6 6 1.0972 4.8653 -0.0018 7 8 0.8369 5.2633 -1.3494 8 6 3.3039 3.6836 -0.0009 9 6 4.0669 2.5363 -0.0005 10 6 3.4442 1.2856 -0.0006 11 6 4.2550 0.0531 -0.0007 12 8 3.7094 -1.0336 -0.0013 13 7 5.6005 0.1316 -0.0003 14 6 6.4057 -1.0923 -0.0010 15 6 7.8911 -0.7256 0.0003 16 6 8.7193 -1.9845 0.0002 17 1 8.2347 -2.9498 -0.0003 18 6 10.0958 -1.9042 0.0007 19 7 10.6858 -0.7289 0.0019 20 14 11.1224 -3.4648 0.0013 21 1 10.8101 -4.2632 -1.2112 22 1 12.5641 -3.1088 0.0025 23 1 10.8091 -4.2630 1.2138 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2139 2.3195 -0.0097 28 1 0.1532 4.6836 0.5122 29 1 1.6439 5.6563 0.5115 30 1 0.3097 6.0703 -1.4263 31 1 3.7862 4.6499 -0.0016 32 1 5.1448 2.6036 -0.0010 33 1 6.0357 0.9984 0.0005 34 1 6.1758 -1.6789 0.8885 35 1 6.1764 -1.6777 -0.8914 36 1 8.1212 -0.1388 -0.8890 37 1 8.1201 -0.1405 0.8910 38 1 11.6542 -0.6724 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907320058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:54 Heat of formation + Delta-G solvation = -131.003016 kcal Electronic energy + Delta-G solvation = -20910.845538 eV Core-core repulsion = 17524.401906 eV Total energy + Delta-G solvation = -3386.443632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.67193 -40.05696 -38.89103 -37.23127 -36.57406 -34.84410 -33.17610 -31.39665 -31.17517 -28.45737 -27.76015 -26.32799 -23.59971 -23.36485 -22.63180 -21.48234 -19.29778 -18.55250 -18.35632 -18.00726 -17.56130 -16.85414 -16.50768 -16.35240 -16.28304 -15.84433 -15.67990 -15.32712 -14.83911 -14.54275 -14.30074 -14.21463 -13.87004 -13.46353 -13.22856 -12.92278 -12.72048 -12.65752 -12.52056 -12.23694 -12.13338 -11.94966 -11.67065 -11.47319 -10.95512 -10.83265 -10.60097 -10.19469 -9.94593 -9.28099 -8.24015 -6.34633 -0.29022 0.34785 1.41597 1.44290 1.52256 1.80961 2.20879 2.31424 2.45083 2.71888 3.10423 3.40364 3.68735 3.79417 3.97905 4.07297 4.24996 4.27492 4.35095 4.42847 4.45722 4.47698 4.54384 4.57959 4.68749 4.80242 4.83481 5.06920 5.18912 5.27310 5.42924 5.48378 5.57167 5.66671 5.78010 6.15842 6.36361 6.62849 6.77781 6.94555 7.26773 7.34355 8.87789 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.003235 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.729082 B = 8654.348132 C = 9572.673903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.163 3.837 4 C -0.199 4.199 5 C -0.033 4.033 6 C 0.116 3.884 7 O -0.589 6.589 8 C -0.146 4.146 9 C -0.050 4.050 10 C -0.193 4.193 11 C 0.547 3.453 12 O -0.572 6.572 13 N -0.715 5.715 14 C 0.142 3.858 15 C 0.024 3.976 16 C -0.550 4.550 17 H 0.058 0.942 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.269 1.269 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.403 0.597 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.408 0.592 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 15.367 1.090 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.228 6.228 3 C 0.115 3.885 4 C -0.217 4.217 5 C -0.034 4.034 6 C 0.038 3.962 7 O -0.398 6.398 8 C -0.164 4.164 9 C -0.069 4.069 10 C -0.197 4.197 11 C 0.336 3.664 12 O -0.453 6.453 13 N -0.367 5.367 14 C 0.019 3.981 15 C -0.013 4.013 16 C -0.588 4.588 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.194 1.194 24 H 0.128 0.872 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.176 0.824 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.254 0.746 31 H 0.177 0.823 32 H 0.167 0.833 33 H 0.245 0.755 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.354 13.934 0.967 26.359 hybrid contribution 0.556 -0.059 0.099 0.568 sum -21.799 13.875 1.066 25.862 Atomic orbital electron populations 1.23445 0.76577 1.05491 1.02685 1.86361 1.23285 1.26308 1.86894 1.19275 0.90953 0.85637 0.92627 1.21326 1.01232 0.90565 1.08603 1.20053 0.94222 0.94657 0.94451 1.21104 0.98405 0.92455 0.84194 1.86519 1.77307 1.49658 1.26359 1.21222 0.93124 0.99108 1.02913 1.21423 1.01119 0.90128 0.94186 1.19480 0.91401 0.93850 1.14961 1.18568 0.82302 0.89254 0.76237 1.90746 1.72444 1.30590 1.51538 1.46039 1.05590 1.10723 1.74358 1.21238 0.91347 0.85795 0.99736 1.19125 0.89053 0.96691 0.96449 1.21436 0.92108 0.93413 1.51836 0.92385 1.25874 0.99176 0.99726 0.94318 1.70049 1.10319 1.25303 1.50827 0.85488 0.77269 0.79118 0.79107 1.19394 1.20390 1.19357 0.87206 0.91164 0.90689 0.82358 0.90466 0.89973 0.74610 0.82308 0.83322 0.75536 0.93591 0.93694 0.97212 0.97128 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.34 16 2 O -0.32 -9.99 8.57 -68.71 -0.59 -10.58 16 3 C 0.16 4.80 6.70 22.85 0.15 4.95 16 4 C -0.20 -4.18 8.67 22.34 0.19 -3.99 16 5 C -0.03 -0.61 5.51 -19.84 -0.11 -0.72 16 6 C 0.12 1.22 7.16 71.23 0.51 1.73 16 7 O -0.59 -7.48 13.64 -148.98 -2.03 -9.51 16 8 C -0.15 -2.81 9.67 22.24 0.22 -2.59 16 9 C -0.05 -1.23 9.54 22.52 0.21 -1.01 16 10 C -0.19 -6.21 5.89 -20.01 -0.12 -6.32 16 11 C 0.55 22.10 7.76 86.69 0.67 22.77 16 12 O -0.57 -27.50 15.16 16.91 0.26 -27.24 16 13 N -0.72 -28.06 5.51 -466.26 -2.57 -30.63 16 14 C 0.14 6.61 5.61 86.38 0.48 7.09 16 15 C 0.02 1.27 5.09 29.85 0.15 1.42 16 16 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.01 0.45 5.46 84.66 0.46 0.92 16 19 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 20 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 26 H 0.07 1.03 7.67 -2.38 -0.02 1.01 16 27 H 0.16 2.37 6.30 -2.91 -0.02 2.36 16 28 H 0.08 0.51 8.08 -2.38 -0.02 0.49 16 29 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.40 0.92 9.12 -74.06 -0.68 0.24 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.15 3.15 6.40 -2.91 -0.02 3.13 16 33 H 0.41 13.59 6.50 -92.71 -0.60 12.99 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.04 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -79.30 327.63 1.37 -77.93 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.18 Total: 14.09 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.18 Total: -5.79 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.28 Total: -85.33 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.36 Total: -47.33 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.30 1.37 -77.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.075 kcal (2) G-P(sol) polarization free energy of solvation -79.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds