Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34749 * 116.99511 * 2 1 4 4 O 1.21508 * 120.00617 * 359.97438 * 3 2 1 5 5 C 1.47408 * 119.99677 * 180.02562 * 3 2 1 6 6 C 1.39769 * 120.19733 * 359.97438 * 5 3 2 7 7 C 1.37765 * 119.90055 * 179.97438 * 6 5 3 8 8 C 1.50697 * 119.84291 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47066 * 90.00201 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00162 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99532 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47381 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47001 * 119.99934 * 15 13 11 18 18 H 1.48497 * 109.47392 * 239.99632 * 15 13 11 19 19 C 1.38563 * 120.30952 * 0.27735 * 7 6 5 20 20 C 1.38055 * 120.40017 * 359.44808 * 19 7 6 21 21 C 1.38705 * 120.09004 * 0.55081 * 20 19 7 22 22 O 1.35648 * 120.15179 * 179.70511 * 21 20 19 23 23 C 1.42896 * 116.99882 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47108 * 299.99859 * 1 2 3 26 26 H 1.09000 * 109.46808 * 60.00391 * 1 2 3 27 27 H 1.07995 * 120.04815 * 0.02562 * 6 5 3 28 28 H 1.09001 * 109.47558 * 330.00365 * 8 7 6 29 29 H 1.08998 * 109.47216 * 210.00027 * 8 7 6 30 30 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 31 31 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 32 32 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 33 33 H 0.97001 * 119.99132 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.80026 * 179.70043 * 19 7 6 35 35 H 1.08003 * 119.95104 * 180.25153 * 20 19 7 36 36 H 1.09005 * 109.46894 * 180.02562 * 23 22 21 37 37 H 1.09006 * 109.47273 * 299.99996 * 23 22 21 38 38 H 1.08996 * 109.47196 * 60.00222 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2779 -0.0006 6 6 4.3010 0.1083 -0.0006 7 6 5.6764 0.1876 -0.0016 8 6 6.5003 -1.0742 -0.0022 9 7 6.7669 -1.4843 -1.3875 10 6 7.5692 -2.7142 -1.4272 11 6 7.8225 -3.1026 -2.8611 12 1 7.4267 -2.4966 -3.6627 13 6 8.5587 -4.2322 -3.1497 14 7 9.0402 -4.9703 -2.1735 15 14 8.8720 -4.7140 -4.9270 16 1 8.2270 -3.7261 -5.8288 17 1 10.3347 -4.7375 -5.1830 18 1 8.3032 -6.0617 -5.1822 19 6 6.3057 1.4220 0.0031 20 6 5.5622 2.5853 -0.0026 21 6 4.1764 2.5248 -0.0015 22 8 3.4447 3.6670 -0.0010 23 6 4.1667 4.9001 -0.0022 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8149 -0.8560 -0.0006 28 1 5.9541 -1.8651 0.5120 29 1 7.4445 -0.8919 0.5109 30 1 7.2155 -0.7427 -1.9041 31 1 8.5209 -2.5437 -0.9239 32 1 7.0301 -3.5161 -0.9230 33 1 9.5584 -5.7648 -2.3766 34 1 7.3844 1.4746 0.0071 35 1 6.0602 3.5436 -0.0030 36 1 3.4635 5.7329 -0.0012 37 1 4.7948 4.9543 0.8871 38 1 4.7927 4.9537 -0.8929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916577033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = -96.008103 kcal Electronic energy + Delta-G solvation = -20999.384818 eV Core-core repulsion = 17614.458679 eV Total energy + Delta-G solvation = -3384.926138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78140 -39.59348 -37.88877 -36.27039 -35.09194 -32.60766 -31.67999 -30.47841 -28.09323 -27.54326 -26.57957 -24.23351 -23.89592 -21.79663 -21.43203 -20.30172 -18.36462 -17.49698 -16.89162 -16.38226 -16.32256 -16.03192 -15.77146 -14.92456 -14.55253 -14.42713 -14.25218 -13.72597 -13.53942 -13.36194 -13.21623 -12.67545 -12.41609 -12.18693 -12.13068 -11.70700 -11.45677 -11.28607 -11.19221 -10.94215 -10.77448 -10.73241 -10.62519 -10.30141 -9.94767 -9.20502 -9.13304 -8.50392 -8.20273 -7.32972 -6.04825 -4.06626 0.72990 1.36081 2.60720 2.71500 3.08530 3.30570 3.38046 3.43360 3.73191 4.42922 4.59617 4.72738 4.79880 4.94254 4.96347 5.05767 5.12652 5.14998 5.28466 5.30882 5.31490 5.39321 5.50647 5.54429 5.71616 5.96155 6.02288 6.16622 6.21093 6.37147 6.63016 6.69792 7.19904 7.21567 7.38310 7.76634 7.84376 8.09813 8.35114 8.57014 9.02877 9.58495 11.06284 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.003574 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.151036 B = 7831.887512 C = 8620.463595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.497 6.497 5 C -0.167 4.167 6 C -0.003 4.003 7 C -0.118 4.118 8 C 0.098 3.902 9 N -0.684 5.684 10 C 0.193 3.807 11 C -0.514 4.514 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.036 4.036 20 C -0.224 4.224 21 C 0.181 3.819 22 O -0.288 6.288 23 C 0.022 3.978 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.329 0.671 31 H -0.013 1.013 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 15.991 7.203 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.385 6.385 5 C -0.169 4.169 6 C -0.021 4.021 7 C -0.118 4.118 8 C -0.031 4.031 9 N -0.315 5.315 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.055 4.055 20 C -0.242 4.242 21 C 0.134 3.866 22 O -0.200 6.200 23 C -0.073 4.073 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.164 0.836 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.146 0.854 31 H 0.005 0.995 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.738 15.805 7.169 20.952 hybrid contribution 1.222 0.159 -0.678 1.406 sum -10.516 15.965 6.492 20.189 Atomic orbital electron populations 1.23229 0.76304 1.03624 1.02327 1.86583 1.23261 1.32726 1.84643 1.20901 0.88797 0.81453 0.73156 1.90851 1.66491 1.35706 1.45499 1.18389 0.89424 0.91908 1.17194 1.21259 0.93079 0.97142 0.90660 1.19943 0.93765 0.95399 1.02720 1.20832 0.96560 0.92646 0.93082 1.60741 1.53472 1.08087 1.09202 1.19595 0.90055 0.86303 0.97421 1.21221 1.32290 1.09549 0.92166 0.91870 1.24989 0.95736 0.96317 0.97538 1.69973 1.36206 1.16216 1.31348 0.86428 0.77737 0.78453 0.84715 1.19639 1.21110 1.20972 1.21171 1.00241 0.91255 0.92804 1.21116 0.91795 1.00011 1.11299 1.18946 0.89859 0.85521 0.92284 1.86303 1.34371 1.12290 1.87004 1.23144 0.98207 0.84549 1.01403 0.88039 0.92089 0.91993 0.83570 0.90580 0.95191 0.85417 0.99491 0.95217 0.92954 0.85150 0.84708 0.88152 0.92549 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.45 16 2 O -0.36 -4.84 9.82 -40.62 -0.40 -5.24 16 3 C 0.51 7.86 7.89 34.46 0.27 8.13 16 4 O -0.50 -8.49 14.95 -26.59 -0.40 -8.89 16 5 C -0.17 -2.48 5.89 -104.86 -0.62 -3.10 16 6 C 0.00 -0.04 9.25 -39.18 -0.36 -0.40 16 7 C -0.12 -1.71 5.39 -104.68 -0.56 -2.27 16 8 C 0.10 1.65 5.80 -4.97 -0.03 1.62 16 9 N -0.68 -14.24 6.48 -116.34 -0.75 -15.00 16 10 C 0.19 4.94 5.44 -4.98 -0.03 4.91 16 11 C -0.51 -14.41 9.32 -34.44 -0.32 -14.73 16 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 15 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.04 -0.45 9.68 -39.53 -0.38 -0.83 16 20 C -0.22 -2.61 9.03 -39.48 -0.36 -2.96 16 21 C 0.18 2.49 6.70 -38.67 -0.26 2.23 16 22 O -0.29 -3.88 8.57 -40.53 -0.35 -4.22 16 23 C 0.02 0.18 9.81 101.05 0.99 1.18 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.15 2.07 7.61 -52.49 -0.40 1.67 16 28 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 29 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.33 6.58 8.72 -39.29 -0.34 6.23 16 31 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.14 1.18 6.30 -52.48 -0.33 0.85 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 38 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -33.14 331.31 -7.09 -40.22 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.21 Total: 0.72 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.68 Total: -3.29 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.02 Total: -40.83 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.14 Total: -18.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.14 -7.09 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916577033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.787 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds