Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34749 * 116.99511 * 2 1 4 4 O 1.21508 * 120.00617 * 359.97438 * 3 2 1 5 5 C 1.47408 * 119.99677 * 180.02562 * 3 2 1 6 6 C 1.39769 * 120.19733 * 359.97438 * 5 3 2 7 7 C 1.37765 * 119.90055 * 179.97438 * 6 5 3 8 8 C 1.50697 * 119.84291 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47066 * 90.00201 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00162 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99532 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00003 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47381 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47001 * 119.99934 * 15 13 11 18 18 H 1.48497 * 109.47392 * 239.99632 * 15 13 11 19 19 C 1.38563 * 120.30952 * 0.27735 * 7 6 5 20 20 C 1.38055 * 120.40017 * 359.44808 * 19 7 6 21 21 C 1.38705 * 120.09004 * 0.55081 * 20 19 7 22 22 O 1.35648 * 120.15179 * 179.70511 * 21 20 19 23 23 C 1.42896 * 116.99882 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47108 * 299.99859 * 1 2 3 26 26 H 1.09000 * 109.46808 * 60.00391 * 1 2 3 27 27 H 1.07995 * 120.04815 * 0.02562 * 6 5 3 28 28 H 1.09001 * 109.47558 * 330.00365 * 8 7 6 29 29 H 1.08998 * 109.47216 * 210.00027 * 8 7 6 30 30 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 31 31 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 32 32 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 33 33 H 0.97001 * 119.99132 * 180.02562 * 14 13 11 34 34 H 1.07996 * 119.80026 * 179.70043 * 19 7 6 35 35 H 1.08003 * 119.95104 * 180.25153 * 20 19 7 36 36 H 1.09005 * 109.46894 * 180.02562 * 23 22 21 37 37 H 1.09006 * 109.47273 * 299.99996 * 23 22 21 38 38 H 1.08996 * 109.47196 * 60.00222 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2779 -0.0006 6 6 4.3010 0.1083 -0.0006 7 6 5.6764 0.1876 -0.0016 8 6 6.5003 -1.0742 -0.0022 9 7 6.7669 -1.4843 -1.3875 10 6 7.5692 -2.7142 -1.4272 11 6 7.8225 -3.1026 -2.8611 12 1 7.4267 -2.4966 -3.6627 13 6 8.5587 -4.2322 -3.1497 14 7 9.0402 -4.9703 -2.1735 15 14 8.8720 -4.7140 -4.9270 16 1 8.2270 -3.7261 -5.8288 17 1 10.3347 -4.7375 -5.1830 18 1 8.3032 -6.0617 -5.1822 19 6 6.3057 1.4220 0.0031 20 6 5.5622 2.5853 -0.0026 21 6 4.1764 2.5248 -0.0015 22 8 3.4447 3.6670 -0.0010 23 6 4.1667 4.9001 -0.0022 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8149 -0.8560 -0.0006 28 1 5.9541 -1.8651 0.5120 29 1 7.4445 -0.8919 0.5109 30 1 7.2155 -0.7427 -1.9041 31 1 8.5209 -2.5437 -0.9239 32 1 7.0301 -3.5161 -0.9230 33 1 9.5584 -5.7648 -2.3766 34 1 7.3844 1.4746 0.0071 35 1 6.0602 3.5436 -0.0030 36 1 3.4635 5.7329 -0.0012 37 1 4.7948 4.9543 0.8871 38 1 4.7927 4.9537 -0.8929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916577033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = -117.559336 kcal Electronic energy + Delta-G solvation = -21000.319349 eV Core-core repulsion = 17614.458679 eV Total energy + Delta-G solvation = -3385.860670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83033 -40.62532 -38.96863 -37.37767 -36.73611 -34.56683 -32.74678 -31.81482 -29.05635 -28.70037 -27.92150 -25.59680 -25.11237 -23.39258 -22.78275 -21.44154 -19.35165 -18.65636 -18.51307 -17.74659 -17.41918 -17.06267 -16.72583 -16.61819 -16.12944 -15.50015 -15.43128 -15.17239 -14.58666 -14.41785 -14.39205 -14.34454 -13.52187 -13.42426 -13.20036 -13.03667 -12.92568 -12.72338 -12.59694 -12.37461 -12.20644 -11.98337 -11.85166 -11.77463 -11.44435 -11.24338 -10.64356 -10.16310 -9.30821 -9.02508 -8.20172 -6.30631 -0.33217 0.31529 1.42929 1.44175 1.49122 1.57684 1.73412 2.23982 2.42155 2.66066 3.13504 3.59715 3.67946 3.80686 3.92936 4.09430 4.29116 4.30901 4.33283 4.34056 4.38097 4.40729 4.58757 4.69822 4.73770 4.78668 4.88749 5.01474 5.12350 5.14753 5.30256 5.32940 5.55037 5.61722 5.65932 6.05032 6.31417 6.47292 6.73424 6.74891 6.92368 7.40252 8.91299 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.003574 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.151036 B = 7831.887512 C = 8620.463595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.510 3.490 4 O -0.522 6.522 5 C -0.190 4.190 6 C -0.005 4.005 7 C -0.131 4.131 8 C 0.103 3.897 9 N -0.685 5.685 10 C 0.207 3.793 11 C -0.534 4.534 12 H 0.063 0.937 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.280 1.280 19 C -0.028 4.028 20 C -0.212 4.212 21 C 0.179 3.821 22 O -0.313 6.313 23 C 0.011 3.989 24 H 0.131 0.869 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.141 0.859 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.336 0.664 31 H -0.033 1.033 32 H 0.002 0.998 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 17.439 6.496 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.357 3.643 4 O -0.413 6.413 5 C -0.192 4.192 6 C -0.024 4.024 7 C -0.131 4.131 8 C -0.026 4.026 9 N -0.316 5.316 10 C 0.079 3.921 11 C -0.572 4.572 12 H 0.081 0.919 13 C -0.196 4.196 14 N -0.573 5.573 15 Si 0.795 3.205 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.047 4.047 20 C -0.230 4.230 21 C 0.131 3.869 22 O -0.224 6.224 23 C -0.083 4.083 24 H 0.149 0.851 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.153 0.847 31 H -0.015 1.015 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.380 17.271 6.471 21.672 hybrid contribution 1.040 -0.200 -0.393 1.129 sum -10.340 17.072 6.078 20.864 Atomic orbital electron populations 1.23548 0.74389 1.05686 1.02587 1.86575 1.25262 1.32027 1.84213 1.21090 0.89167 0.81523 0.72554 1.90820 1.67034 1.36431 1.47005 1.18526 0.89301 0.92723 1.18613 1.21184 0.93221 0.97060 0.90966 1.19712 0.93385 0.95145 1.04891 1.20782 0.97297 0.93792 0.90716 1.60586 1.52084 1.06913 1.12021 1.19237 0.89211 0.87690 0.95933 1.21578 1.32493 1.09954 0.93191 0.91887 1.25908 0.95331 0.96201 1.02140 1.70090 1.36826 1.16732 1.33700 0.85315 0.77878 0.78123 0.79158 1.18809 1.20252 1.20533 1.21407 1.01414 0.90549 0.91304 1.21421 0.90835 1.01194 1.09542 1.19170 0.90706 0.85484 0.91495 1.86281 1.36026 1.13464 1.86670 1.23498 0.99015 0.82844 1.02977 0.85115 0.91625 0.91981 0.84143 0.91233 0.94273 0.84688 1.01546 0.97938 0.92642 0.82957 0.81222 0.86685 0.90674 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.57 113.37 1.20 1.79 16 2 O -0.36 -9.99 9.82 -56.60 -0.56 -10.54 16 3 C 0.51 15.82 7.89 70.24 0.55 16.38 16 4 O -0.52 -18.00 14.95 26.81 0.40 -17.59 16 5 C -0.19 -5.58 5.89 -20.02 -0.12 -5.70 16 6 C -0.01 -0.16 9.25 22.53 0.21 0.05 16 7 C -0.13 -3.68 5.39 -19.90 -0.11 -3.79 16 8 C 0.10 3.45 5.80 85.55 0.50 3.94 16 9 N -0.69 -28.61 6.48 -521.98 -3.38 -31.99 16 10 C 0.21 10.84 5.44 85.56 0.47 11.31 16 11 C -0.53 -30.14 9.32 25.60 0.24 -29.91 16 12 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 13 C 0.00 0.14 5.46 84.66 0.46 0.60 16 14 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 15 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 16 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.03 -0.64 9.68 22.30 0.22 -0.42 16 20 C -0.21 -4.32 9.03 22.34 0.20 -4.12 16 21 C 0.18 4.67 6.70 22.86 0.15 4.82 16 22 O -0.31 -7.93 8.57 -68.71 -0.59 -8.52 16 23 C 0.01 0.15 9.81 113.37 1.11 1.26 16 24 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.14 4.11 7.61 -2.91 -0.02 4.08 16 28 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 29 H 0.04 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.34 13.22 8.72 -89.69 -0.78 12.44 16 31 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 32 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.17 2.22 6.30 -2.91 -0.02 2.20 16 36 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 0.76 7.66 -2.38 -0.02 0.75 16 38 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 Total: -1.00 -71.82 331.31 3.56 -68.26 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.29 Total: 13.63 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.08 Total: -3.79 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -3.10 Total: -87.45 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.74 Total: -36.66 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.82 3.56 -68.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916577033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.296 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds