Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99843 * 2 1 4 4 C 1.38566 * 120.07358 * 359.72084 * 3 2 1 5 5 C 1.38243 * 120.00005 * 179.74788 * 4 3 2 6 6 C 1.38259 * 120.14555 * 0.50831 * 5 4 3 7 7 C 1.50699 * 119.92536 * 179.74435 * 6 5 4 8 8 C 1.52995 * 109.47221 * 270.02124 * 7 6 5 9 9 N 1.46500 * 109.47281 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00567 * 180.02562 * 9 8 7 11 11 O 1.21289 * 119.99635 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00508 * 179.97438 * 10 9 8 13 13 C 1.50706 * 109.47170 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00068 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99783 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00181 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47323 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47442 * 119.99998 * 17 15 13 20 20 H 1.48503 * 109.47103 * 240.00054 * 17 15 13 21 21 C 1.38237 * 120.14360 * 359.76928 * 6 5 4 22 22 C 1.38569 * 120.00282 * 359.97438 * 21 6 5 23 23 O 1.35993 * 120.07217 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.47103 * 60.00803 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00363 * 1 2 3 27 27 H 1.07999 * 120.00009 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.92686 * 180.25380 * 5 4 3 29 29 H 1.09000 * 109.47233 * 30.02958 * 7 6 5 30 30 H 1.09006 * 109.46493 * 150.02571 * 7 6 5 31 31 H 1.09005 * 109.47144 * 300.00103 * 8 7 6 32 32 H 1.08999 * 109.47355 * 60.00189 * 8 7 6 33 33 H 0.97001 * 119.99531 * 0.02562 * 9 8 7 34 34 H 1.08991 * 109.47227 * 300.00197 * 12 10 9 35 35 H 1.09006 * 109.46493 * 60.00423 * 12 10 9 36 36 H 0.97004 * 120.00503 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.00343 * 179.97438 * 21 6 5 38 38 H 0.96705 * 114.00435 * 269.97555 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9223 3.6057 -0.0006 6 6 3.3029 3.6799 -0.0001 7 6 3.9836 5.0244 -0.0001 8 6 4.2140 5.4793 -1.4426 9 7 4.8762 6.7861 -1.4427 10 6 5.1803 7.3875 -2.6098 11 8 4.9052 6.8470 -3.6602 12 6 5.8610 8.7320 -2.6098 13 6 6.0881 9.1801 -4.0307 14 1 5.7708 8.5541 -4.8516 15 6 6.7009 10.3892 -4.2827 16 7 7.0877 11.1513 -3.2831 17 14 6.9817 10.9449 -6.0438 18 1 6.4597 9.9146 -6.9772 19 1 6.2732 12.2290 -6.2767 20 1 8.4361 11.1325 -6.2777 21 6 4.0602 2.5234 0.0000 22 6 3.4359 1.2864 0.0000 23 8 4.1796 0.1478 0.0006 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2146 2.3196 -0.0108 28 1 1.3341 4.5114 -0.0010 29 1 3.3537 5.7506 0.5137 30 1 4.9418 4.9465 0.5137 31 1 4.8439 4.7531 -1.9564 32 1 3.2559 5.5572 -1.9565 33 1 5.0958 7.2185 -0.6026 34 1 5.2313 9.4581 -2.0958 35 1 6.8193 8.6540 -2.0963 36 1 7.5191 12.0018 -3.4603 37 1 5.1386 2.5840 -0.0001 38 1 4.3947 -0.1820 -0.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -105.985505 kcal Electronic energy + Delta-G solvation = -20427.198514 eV Core-core repulsion = 17041.839723 eV Total energy + Delta-G solvation = -3385.358791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69095 -38.75087 -38.14420 -37.13695 -34.66419 -32.90645 -31.91689 -30.33590 -29.28053 -28.28248 -26.96551 -24.07658 -22.90385 -22.64803 -21.21907 -19.65297 -18.68243 -17.76437 -16.86954 -16.40259 -16.16442 -15.88525 -15.48500 -15.03300 -14.96210 -14.65220 -14.34351 -14.26236 -14.08338 -13.33715 -12.93300 -12.62563 -12.40984 -12.24082 -12.09077 -11.96851 -11.62393 -11.35925 -11.10863 -11.01397 -10.81905 -10.72204 -10.59496 -9.94338 -9.24015 -9.10540 -8.65802 -8.48634 -8.39167 -8.27151 -6.04883 -4.04076 0.96061 1.06788 2.91814 3.29336 3.34114 3.41102 3.49851 3.74596 3.89962 3.98004 4.48776 4.49869 4.63100 4.76564 4.78911 4.93411 5.03881 5.06963 5.13661 5.15653 5.32197 5.33538 5.57584 5.60250 5.93061 5.93372 5.99384 6.02506 6.36586 6.40361 6.43754 6.90869 7.05698 7.20499 7.34510 7.49903 7.97221 8.07347 8.45983 9.07431 9.25557 9.61107 11.07601 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038551 B = 0.002562 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.138467 B =10926.282997 C =10960.134905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.097 3.903 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.095 4.095 7 C -0.088 4.088 8 C 0.126 3.874 9 N -0.751 5.751 10 C 0.513 3.487 11 O -0.547 6.547 12 C 0.004 3.996 13 C -0.506 4.506 14 H 0.075 0.925 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.099 4.099 22 C 0.075 3.925 23 O -0.488 6.488 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.396 0.604 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.261 0.739 37 H 0.138 0.862 38 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -19.537 11.067 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.051 3.949 4 C -0.212 4.212 5 C -0.099 4.099 6 C -0.096 4.096 7 C -0.126 4.126 8 C 0.001 3.999 9 N -0.406 5.406 10 C 0.303 3.697 11 O -0.423 6.423 12 C -0.035 4.035 13 C -0.545 4.545 14 H 0.093 0.907 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.118 4.118 22 C 0.030 3.970 23 O -0.297 6.297 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.898 -19.912 10.915 25.635 hybrid contribution 0.016 0.620 -0.899 1.092 sum -11.882 -19.292 10.016 24.772 Atomic orbital electron populations 1.23087 0.78518 1.03986 1.01396 1.86139 1.21185 1.26329 1.88698 1.19465 0.91778 0.84890 0.98790 1.21147 1.00102 0.91836 1.08090 1.20926 0.93968 0.97266 0.97736 1.19538 0.93331 0.94601 1.02143 1.20765 1.01147 0.93276 0.97415 1.21142 0.97882 0.85916 0.94912 1.46329 1.63837 1.20730 1.09680 1.22011 0.77084 0.88490 0.82067 1.90539 1.53432 1.66558 1.31742 1.19247 0.96415 0.87560 1.00283 1.21217 1.37968 1.03624 0.91690 0.90660 1.25015 0.95589 0.96492 0.97620 1.69967 1.41261 1.12183 1.30718 0.86381 0.77716 0.78457 0.84615 1.19489 1.21023 1.21019 1.21203 1.00736 0.90315 0.99537 1.17704 0.86115 0.86607 1.06602 1.84876 1.71783 1.39664 1.33400 0.92573 0.88205 0.92630 0.85010 0.85191 0.90134 0.90167 0.92133 0.92111 0.77062 0.93464 0.93455 0.92982 0.84447 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.22 10.28 -34.22 -0.35 -3.57 16 3 C 0.10 1.05 6.70 -39.12 -0.26 0.79 16 4 C -0.19 -1.83 9.04 -39.46 -0.36 -2.19 16 5 C -0.08 -0.79 9.69 -39.57 -0.38 -1.17 16 6 C -0.10 -0.99 5.13 -104.62 -0.54 -1.53 16 7 C -0.09 -0.90 5.45 -27.89 -0.15 -1.06 16 8 C 0.13 1.79 5.66 -4.04 -0.02 1.76 16 9 N -0.75 -12.56 5.56 -60.30 -0.33 -12.90 16 10 C 0.51 11.70 7.82 -10.99 -0.09 11.61 16 11 O -0.55 -14.43 15.46 5.55 0.09 -14.34 16 12 C 0.00 0.11 5.46 -29.03 -0.16 -0.05 16 13 C -0.51 -14.80 8.92 -34.44 -0.31 -15.10 16 14 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 17 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.10 -1.06 9.63 -39.46 -0.38 -1.44 16 22 C 0.08 0.85 6.72 -39.12 -0.26 0.58 16 23 O -0.49 -5.19 13.29 -34.22 -0.45 -5.65 16 24 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 27 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.40 5.46 8.47 -40.82 -0.35 5.12 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 37 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.39 2.46 9.07 45.56 0.41 2.87 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -35.78 331.45 -6.71 -42.49 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.35 Total: 2.74 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.01 Total: -5.21 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.40 Total: -38.66 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.72 Total: -23.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.78 -6.71 -42.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.495 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds