Wall clock time and date at job start Wed Apr 15 2020 11:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99843 * 2 1 4 4 C 1.38566 * 120.07358 * 359.72084 * 3 2 1 5 5 C 1.38243 * 120.00005 * 179.74788 * 4 3 2 6 6 C 1.38259 * 120.14555 * 0.50831 * 5 4 3 7 7 C 1.50699 * 119.92536 * 179.74435 * 6 5 4 8 8 C 1.52995 * 109.47221 * 270.02124 * 7 6 5 9 9 N 1.46500 * 109.47281 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00567 * 180.02562 * 9 8 7 11 11 O 1.21289 * 119.99635 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00508 * 179.97438 * 10 9 8 13 13 C 1.50706 * 109.47170 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00068 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99783 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00181 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47323 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47442 * 119.99998 * 17 15 13 20 20 H 1.48503 * 109.47103 * 240.00054 * 17 15 13 21 21 C 1.38237 * 120.14360 * 359.76928 * 6 5 4 22 22 C 1.38569 * 120.00282 * 359.97438 * 21 6 5 23 23 O 1.35993 * 120.07217 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.47103 * 60.00803 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00363 * 1 2 3 27 27 H 1.07999 * 120.00009 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.92686 * 180.25380 * 5 4 3 29 29 H 1.09000 * 109.47233 * 30.02958 * 7 6 5 30 30 H 1.09006 * 109.46493 * 150.02571 * 7 6 5 31 31 H 1.09005 * 109.47144 * 300.00103 * 8 7 6 32 32 H 1.08999 * 109.47355 * 60.00189 * 8 7 6 33 33 H 0.97001 * 119.99531 * 0.02562 * 9 8 7 34 34 H 1.08991 * 109.47227 * 300.00197 * 12 10 9 35 35 H 1.09006 * 109.46493 * 60.00423 * 12 10 9 36 36 H 0.97004 * 120.00503 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.00343 * 179.97438 * 21 6 5 38 38 H 0.96705 * 114.00435 * 269.97555 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9223 3.6057 -0.0006 6 6 3.3029 3.6799 -0.0001 7 6 3.9836 5.0244 -0.0001 8 6 4.2140 5.4793 -1.4426 9 7 4.8762 6.7861 -1.4427 10 6 5.1803 7.3875 -2.6098 11 8 4.9052 6.8470 -3.6602 12 6 5.8610 8.7320 -2.6098 13 6 6.0881 9.1801 -4.0307 14 1 5.7708 8.5541 -4.8516 15 6 6.7009 10.3892 -4.2827 16 7 7.0877 11.1513 -3.2831 17 14 6.9817 10.9449 -6.0438 18 1 6.4597 9.9146 -6.9772 19 1 6.2732 12.2290 -6.2767 20 1 8.4361 11.1325 -6.2777 21 6 4.0602 2.5234 0.0000 22 6 3.4359 1.2864 0.0000 23 8 4.1796 0.1478 0.0006 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2146 2.3196 -0.0108 28 1 1.3341 4.5114 -0.0010 29 1 3.3537 5.7506 0.5137 30 1 4.9418 4.9465 0.5137 31 1 4.8439 4.7531 -1.9564 32 1 3.2559 5.5572 -1.9565 33 1 5.0958 7.2185 -0.6026 34 1 5.2313 9.4581 -2.0958 35 1 6.8193 8.6540 -2.0963 36 1 7.5191 12.0018 -3.4603 37 1 5.1386 2.5840 -0.0001 38 1 4.3947 -0.1820 -0.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:59 Heat of formation + Delta-G solvation = -132.385409 kcal Electronic energy + Delta-G solvation = -20428.343300 eV Core-core repulsion = 17041.839723 eV Total energy + Delta-G solvation = -3386.503577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42610 -40.40311 -38.93835 -37.98066 -36.00662 -35.07860 -33.04289 -31.20097 -30.93670 -29.26941 -27.82267 -25.79059 -24.01290 -23.62780 -22.10444 -21.29258 -19.44233 -18.53541 -18.49540 -17.62854 -17.59962 -17.03148 -16.70214 -16.36056 -16.26235 -15.88090 -15.48318 -15.11556 -14.93037 -14.62891 -14.52218 -14.17407 -13.58531 -13.29407 -13.06131 -13.01271 -12.84408 -12.74210 -12.58965 -12.30814 -12.04922 -12.03015 -11.82952 -11.56190 -11.41982 -10.62059 -10.52577 -9.97227 -9.84141 -9.04929 -8.24562 -6.31381 0.21239 0.29080 1.40077 1.40941 1.55822 1.91631 2.30148 2.33051 2.47883 2.66785 3.10766 3.23887 3.81113 3.88136 4.05966 4.11091 4.21336 4.34208 4.37436 4.40237 4.46905 4.56879 4.68000 4.72660 4.78784 5.02632 5.07644 5.13712 5.18232 5.24121 5.29322 5.58414 5.60256 5.70388 5.75585 6.07939 6.26706 6.74314 6.84086 6.87034 7.35109 7.54981 8.87700 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.038551 B = 0.002562 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.138467 B =10926.282997 C =10960.134905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.085 3.915 4 C -0.193 4.193 5 C -0.084 4.084 6 C -0.105 4.105 7 C -0.074 4.074 8 C 0.127 3.873 9 N -0.726 5.726 10 C 0.517 3.483 11 O -0.589 6.589 12 C 0.007 3.993 13 C -0.536 4.536 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.924 5.924 17 Si 0.964 3.036 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.107 4.107 22 C 0.056 3.944 23 O -0.502 6.502 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.413 0.587 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.267 0.733 37 H 0.143 0.857 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.665 -19.570 11.655 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.039 3.961 4 C -0.212 4.212 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.111 4.111 8 C 0.003 3.997 9 N -0.380 5.380 10 C 0.306 3.694 11 O -0.469 6.469 12 C -0.033 4.033 13 C -0.574 4.574 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.126 4.126 22 C 0.011 3.989 23 O -0.313 6.313 24 H 0.084 0.916 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.250 0.750 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.744 -19.956 11.562 26.350 hybrid contribution 0.228 0.547 -1.028 1.186 sum -12.516 -19.409 10.534 25.384 Atomic orbital electron populations 1.23371 0.76521 1.05581 1.02330 1.86110 1.23349 1.26343 1.88663 1.19671 0.91943 0.85629 0.98871 1.21417 1.01286 0.91259 1.07209 1.21205 0.93898 0.98128 0.96975 1.19580 0.93789 0.94346 1.02891 1.20651 1.02358 0.93576 0.94530 1.21275 0.96741 0.83877 0.97761 1.45999 1.62084 1.21292 1.08593 1.21470 0.77070 0.87840 0.83049 1.90517 1.55418 1.67348 1.33598 1.19093 0.96489 0.89283 0.98412 1.21411 1.38954 1.04134 0.92937 0.92854 1.25784 0.95020 0.96352 1.01786 1.70031 1.41330 1.12554 1.32505 0.85415 0.78174 0.78051 0.79513 1.20067 1.19702 1.19770 1.21330 1.01168 0.90423 0.99657 1.17934 0.86707 0.86889 1.07369 1.84819 1.71846 1.39716 1.34966 0.91636 0.86446 0.91594 0.82738 0.83395 0.88220 0.88885 0.93298 0.92889 0.75006 0.93761 0.93855 0.92396 0.83957 0.74068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.55 10.28 -79.59 -0.82 -7.37 16 3 C 0.08 1.77 6.70 22.57 0.15 1.92 16 4 C -0.19 -3.31 9.04 22.35 0.20 -3.11 16 5 C -0.08 -1.46 9.69 22.28 0.22 -1.25 16 6 C -0.11 -2.02 5.13 -19.86 -0.10 -2.12 16 7 C -0.07 -1.34 5.45 29.85 0.16 -1.17 16 8 C 0.13 3.45 5.66 86.38 0.49 3.94 16 9 N -0.73 -23.44 5.56 -463.07 -2.57 -26.02 16 10 C 0.52 23.62 7.82 87.66 0.69 24.31 16 11 O -0.59 -31.62 15.46 -3.06 -0.05 -31.66 16 12 C 0.01 0.34 5.46 29.10 0.16 0.50 16 13 C -0.54 -31.81 8.92 25.60 0.23 -31.58 16 14 H 0.05 3.35 6.75 -2.91 -0.02 3.33 16 15 C 0.01 0.52 5.46 84.65 0.46 0.98 16 16 N -0.92 -54.02 13.29 21.45 0.28 -53.73 16 17 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 C -0.11 -2.21 9.63 22.35 0.22 -1.99 16 22 C 0.06 1.24 6.72 22.57 0.15 1.40 16 23 O -0.50 -10.63 13.29 -79.60 -1.06 -11.69 16 24 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 25 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.07 0.55 7.68 -2.39 -0.02 0.53 16 27 H 0.16 1.81 6.30 -2.91 -0.02 1.79 16 28 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 29 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 30 H 0.09 1.48 8.08 -2.38 -0.02 1.46 16 31 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 10.58 8.47 -92.71 -0.79 9.80 16 34 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.40 5.13 9.07 -74.05 -0.67 4.46 16 Total: -1.00 -77.02 331.45 1.58 -75.44 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.36 Total: 14.42 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.13 Total: -6.89 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -2.29 Total: -79.75 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -1.92 Total: -50.72 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -77.02 1.58 -75.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.950 kcal (2) G-P(sol) polarization free energy of solvation -77.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds