Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36069 * 116.99968 * 2 1 4 4 C 1.38528 * 120.02176 * 359.96967 * 3 2 1 5 5 C 1.38226 * 120.05593 * 180.02562 * 4 3 2 6 6 C 1.38703 * 120.09163 * 0.04221 * 5 4 3 7 7 O 1.35973 * 119.98474 * 179.97438 * 6 5 4 8 8 C 1.38666 * 120.03240 * 359.95760 * 6 5 4 9 9 C 1.38543 * 119.94755 * 0.02562 * 8 6 5 10 10 O 1.35989 * 120.04598 * 180.27508 * 9 8 6 11 11 C 1.42900 * 116.99846 * 5.65288 * 10 9 8 12 12 H 1.09004 * 110.88214 * 31.97813 * 11 10 9 13 13 C 1.55154 * 111.00438 * 155.85229 * 11 10 9 14 14 C 1.54320 * 102.94513 * 153.57847 * 13 11 10 15 15 N 1.47023 * 107.26868 * 337.80850 * 14 13 11 16 16 C 1.36938 * 125.64568 * 178.98914 * 15 14 13 17 17 H 1.07995 * 119.99908 * 186.24327 * 16 15 14 18 18 C 1.38818 * 120.00030 * 6.25475 * 16 15 14 19 19 N 1.31614 * 119.99836 * 352.91798 * 18 16 15 20 20 Si 1.86797 * 119.99722 * 172.91800 * 18 16 15 21 21 H 1.48499 * 109.47434 * 94.98009 * 20 18 16 22 22 H 1.48505 * 109.47115 * 214.97775 * 20 18 16 23 23 H 1.48503 * 109.47311 * 334.97562 * 20 18 16 24 24 C 1.47461 * 108.72379 * 358.97634 * 15 14 13 25 25 H 1.09004 * 109.46712 * 60.00484 * 1 2 3 26 26 H 1.08995 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47308 * 300.00625 * 1 2 3 28 28 H 1.07998 * 119.97302 * 0.02569 * 4 3 2 29 29 H 1.08005 * 119.95915 * 180.02562 * 5 4 3 30 30 H 0.96701 * 113.99606 * 90.00548 * 7 6 5 31 31 H 1.07996 * 120.02603 * 180.02562 * 8 6 5 32 32 H 1.09005 * 110.72238 * 271.94949 * 13 11 10 33 33 H 1.09006 * 110.71922 * 35.21106 * 13 11 10 34 34 H 1.09006 * 109.88176 * 97.22742 * 14 13 11 35 35 H 1.09000 * 109.88438 * 218.23528 * 14 13 11 36 36 H 0.97006 * 119.99805 * 180.02562 * 19 18 16 37 37 H 1.08999 * 110.34818 * 265.25099 * 24 15 14 38 38 H 1.09001 * 110.40661 * 142.91789 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2927 2.3745 -0.0006 5 6 1.9195 3.6064 -0.0012 6 6 3.3045 3.6821 -0.0020 7 8 3.9188 4.8951 -0.0030 8 6 4.0629 2.5212 -0.0013 9 6 3.4363 1.2856 -0.0004 10 8 4.1781 0.1459 0.0058 11 6 5.5934 0.2938 0.1367 12 1 5.8385 1.1647 0.7447 13 6 6.2351 -0.9917 0.7224 14 6 7.6755 -0.9412 0.1708 15 7 7.6557 -0.0841 -1.0236 16 6 8.7409 0.2333 -1.7961 17 1 8.6426 0.9524 -2.5958 18 6 9.9672 -0.3694 -1.5515 19 7 10.1235 -1.1379 -0.4945 20 14 11.3954 -0.0898 -2.7224 21 1 12.2402 1.0218 -2.2164 22 1 12.2100 -1.3281 -2.8144 23 1 10.8718 0.2592 -4.0675 24 6 6.2739 0.3771 -1.2524 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2142 2.3178 -0.0007 29 1 1.3301 4.5115 -0.0012 30 1 4.0970 5.2465 0.8801 31 1 5.1413 2.5802 -0.0015 32 1 6.2379 -0.9594 1.8119 33 1 5.7155 -1.8801 0.3633 34 1 8.3446 -0.5178 0.9200 35 1 8.0057 -1.9451 -0.0959 36 1 10.9806 -1.5588 -0.3233 37 1 5.7684 -0.2776 -1.9623 38 1 6.2714 1.4050 -1.6150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225466184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = -54.911190 kcal Electronic energy + Delta-G solvation = -21798.912270 eV Core-core repulsion = 18415.768228 eV Total energy + Delta-G solvation = -3383.144043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63229 -38.73051 -38.35485 -36.45464 -35.28195 -32.31116 -30.32086 -29.49945 -29.03791 -27.29979 -27.05789 -24.57824 -22.67926 -22.27787 -20.29246 -20.06338 -18.90604 -18.03459 -17.12904 -16.70905 -16.49144 -15.86308 -15.05901 -14.83141 -14.67163 -14.63875 -14.18768 -13.78543 -13.72335 -13.09296 -12.73052 -12.49414 -12.35346 -11.96627 -11.82605 -11.52886 -11.36609 -10.96310 -10.94618 -10.78982 -10.66180 -10.32204 -10.20309 -10.05608 -9.87181 -9.68038 -8.69258 -8.59610 -7.69767 -6.87155 -5.74954 -3.08124 1.17439 1.32841 3.22354 3.37094 3.40247 3.46305 3.48896 3.55687 4.17962 4.49649 4.71524 4.86722 5.02041 5.03544 5.16622 5.21550 5.29877 5.35542 5.38110 5.53461 5.56554 5.66348 5.73418 5.92706 6.11019 6.19569 6.34438 6.37410 6.45132 6.53710 6.60768 6.68316 7.18522 7.50245 7.56810 7.58038 7.75137 7.81814 8.21607 9.18351 9.78239 10.43428 11.37343 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.004266 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.089264 B = 6561.509812 C = 7335.423999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.083 3.917 4 C -0.159 4.159 5 C -0.152 4.152 6 C 0.109 3.891 7 O -0.496 6.496 8 C -0.201 4.201 9 C 0.133 3.867 10 O -0.291 6.291 11 C 0.062 3.938 12 H 0.080 0.920 13 C -0.135 4.135 14 C 0.178 3.822 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.120 3.880 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.388 0.612 31 H 0.148 0.852 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.253 0.747 37 H 0.032 0.968 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.860 6.625 4.911 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.038 3.962 4 C -0.178 4.178 5 C -0.171 4.171 6 C 0.065 3.935 7 O -0.306 6.306 8 C -0.220 4.220 9 C 0.086 3.914 10 O -0.203 6.203 11 C 0.006 3.994 12 H 0.098 0.902 13 C -0.173 4.173 14 C 0.053 3.947 15 N -0.330 5.330 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.243 0.757 31 H 0.165 0.835 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.629 6.088 4.271 20.059 hybrid contribution 0.725 0.548 -0.083 0.913 sum -17.904 6.636 4.188 19.548 Atomic orbital electron populations 1.23040 0.78999 1.03859 1.00928 1.86234 1.20600 1.25732 1.89140 1.18277 0.89211 0.85241 1.03502 1.20841 0.99745 0.91015 1.06231 1.21016 0.93667 0.97614 1.04776 1.18055 0.89915 0.84395 1.01159 1.84860 1.80207 1.32120 1.33381 1.21512 1.01754 0.90751 1.07978 1.18124 0.88216 0.86402 0.98643 1.86229 1.19859 1.27338 1.86904 1.23918 0.76141 1.00209 0.99177 0.90201 1.23027 0.98734 0.95789 0.99782 1.21207 0.88679 0.96251 0.88530 1.44339 1.01693 1.56834 1.30133 1.19066 0.86883 1.19932 1.10040 0.90291 1.24826 0.97816 0.99347 0.98168 1.69958 1.23931 1.36012 1.26843 0.86104 0.82161 0.77086 0.80455 1.21617 1.21555 1.20552 1.21926 0.87298 0.98042 0.93408 0.92870 0.88318 0.92938 0.84629 0.85276 0.75664 0.83461 0.91401 0.91001 0.93477 0.92902 0.93649 0.95051 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.27 10.28 -34.55 -0.36 -4.62 16 3 C 0.08 1.20 6.70 -39.14 -0.26 0.94 16 4 C -0.16 -1.83 9.03 -39.48 -0.36 -2.19 16 5 C -0.15 -1.75 9.98 -39.41 -0.39 -2.14 16 6 C 0.11 1.46 6.70 -39.25 -0.26 1.19 16 7 O -0.50 -5.96 13.50 -19.66 -0.27 -6.22 16 8 C -0.20 -3.06 8.88 -39.31 -0.35 -3.41 16 9 C 0.13 2.18 6.69 -39.13 -0.26 1.92 16 10 O -0.29 -5.38 9.73 -34.29 -0.33 -5.72 16 11 C 0.06 1.19 2.81 -24.59 -0.07 1.12 16 12 H 0.08 1.44 6.22 -51.93 -0.32 1.12 16 13 C -0.13 -2.65 6.69 -24.90 -0.17 -2.82 16 14 C 0.18 4.36 5.38 -3.07 -0.02 4.35 16 15 N -0.60 -15.74 3.40 -170.04 -0.58 -16.32 16 16 C -0.23 -6.55 10.26 -15.06 -0.15 -6.70 16 17 H 0.08 2.17 7.84 -52.49 -0.41 1.75 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 19 N -0.92 -27.03 10.36 55.49 0.58 -26.45 16 20 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.12 2.65 6.87 -2.51 -0.02 2.63 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 28 H 0.14 1.13 6.29 -52.49 -0.33 0.80 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.39 2.70 9.06 45.56 0.41 3.11 16 31 H 0.15 2.34 5.67 -52.49 -0.30 2.04 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.05 1.24 7.55 -51.93 -0.39 0.85 16 35 H 0.05 1.42 7.36 -51.93 -0.38 1.04 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.91 7.82 -51.93 -0.41 0.51 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -33.21 315.51 -6.81 -40.03 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.17 Total: 1.49 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.41 Total: -4.13 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.00 Total: -42.77 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.95 Total: -16.56 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.21 -6.81 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225466184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.884 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds