Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99787 * 2 1 4 4 C 1.38691 * 120.04190 * 359.72100 * 3 2 1 5 5 C 1.38210 * 120.08393 * 179.77117 * 4 3 2 6 6 C 1.38255 * 120.18169 * 0.50777 * 5 4 3 7 7 C 1.38651 * 120.08754 * 359.74893 * 6 5 4 8 8 O 1.35987 * 120.04279 * 180.02562 * 7 6 5 9 9 C 1.38955 * 120.04598 * 180.02562 * 3 2 1 10 10 O 1.36093 * 120.08590 * 359.95336 * 9 3 2 11 11 C 1.42902 * 117.00500 * 90.00287 * 10 9 3 12 12 C 1.53931 * 113.73427 * 246.72929 * 11 10 9 13 13 N 1.47956 * 86.17950 * 221.91517 * 12 11 10 14 14 C 1.46903 * 111.00240 * 137.58006 * 13 12 11 15 15 C 1.50699 * 109.47188 * 70.63880 * 14 13 12 16 16 H 1.08002 * 119.99589 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00078 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99714 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47042 * 90.00413 * 19 17 15 21 21 H 1.48500 * 109.47101 * 210.00075 * 19 17 15 22 22 H 1.48494 * 109.47469 * 330.00305 * 19 17 15 23 23 C 1.47960 * 90.76505 * 24.68797 * 13 12 11 24 24 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 25 25 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.07993 * 119.95913 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.91060 * 180.25988 * 5 4 3 29 29 H 1.07995 * 119.95556 * 179.76381 * 6 5 4 30 30 H 0.96702 * 114.00308 * 269.97783 * 8 7 6 31 31 H 1.09007 * 112.93445 * 18.42948 * 11 10 9 32 32 H 1.09000 * 113.75809 * 336.23320 * 12 11 10 33 33 H 1.09003 * 113.76192 * 107.59618 * 12 11 10 34 34 H 1.09001 * 109.47489 * 190.64362 * 14 13 12 35 35 H 1.09003 * 109.47112 * 310.64555 * 14 13 12 36 36 H 0.96996 * 119.99569 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.76325 * 220.99576 * 23 13 12 38 38 H 1.09001 * 113.85878 * 89.63876 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3755 -0.0058 5 6 1.9184 3.6074 -0.0011 6 6 3.2987 3.6853 -0.0011 7 6 4.0603 2.5266 -0.0006 8 8 5.4179 2.6042 0.0000 9 6 3.4340 1.2857 -0.0005 10 8 4.1779 0.1461 -0.0001 11 6 4.5322 -0.3980 -1.2731 12 6 3.8730 -1.7567 -1.5713 13 7 5.1872 -2.1630 -2.1163 14 6 5.5324 -3.5275 -1.6958 15 6 4.6407 -4.5130 -2.4063 16 1 3.8927 -4.1607 -3.1012 17 6 4.7799 -5.8641 -2.1695 18 7 4.0020 -6.7240 -2.7900 19 14 6.0742 -6.4732 -0.9682 20 1 5.4889 -6.5471 0.3947 21 1 6.5376 -7.8221 -1.3817 22 1 7.2250 -5.5347 -0.9624 23 6 5.8703 -1.1589 -1.2711 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2134 2.3190 -0.0100 28 1 1.3281 4.5118 -0.0014 29 1 3.7844 4.6498 -0.0012 30 1 5.8110 2.6262 -0.8833 31 1 4.4393 0.3241 -2.0844 32 1 3.5787 -2.3075 -0.6780 33 1 3.0832 -1.7066 -2.3209 34 1 6.5732 -3.7327 -1.9466 35 1 5.3927 -3.6222 -0.6189 36 1 4.1002 -7.6745 -2.6236 37 1 6.6763 -0.6311 -1.7808 38 1 6.1611 -1.5332 -0.2896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227481583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -41.849268 kcal Electronic energy + Delta-G solvation = -21860.186352 eV Core-core repulsion = 18477.608717 eV Total energy + Delta-G solvation = -3382.577635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76842 -39.28190 -38.50871 -36.59013 -36.08519 -32.74214 -30.31212 -29.61572 -29.20044 -27.30961 -25.66662 -25.17811 -22.71660 -22.38131 -21.19549 -19.43002 -18.97144 -17.82643 -17.10337 -16.84616 -16.71419 -16.00772 -15.44763 -15.20113 -14.89164 -14.49880 -14.36072 -14.05769 -13.81311 -12.92497 -12.79485 -12.44397 -12.41915 -12.17040 -12.02698 -11.98027 -11.79768 -11.30302 -11.15290 -11.03222 -10.71597 -10.67451 -9.87894 -9.75115 -9.36908 -9.26157 -8.78619 -8.59214 -8.31436 -7.95559 -6.05241 -4.03196 0.91054 1.12658 3.06243 3.24290 3.30163 3.37290 3.40253 3.79056 4.10012 4.43029 4.62763 4.70897 4.80810 4.87743 5.03331 5.04199 5.06313 5.20813 5.24245 5.28420 5.35803 5.42987 5.83847 5.94694 6.01432 6.03887 6.10282 6.15636 6.31120 6.38220 6.43565 6.54429 6.83909 7.11897 7.29516 7.37060 7.75530 7.80799 7.84201 8.60367 9.02133 9.56164 11.07969 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.004409 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.577807 B = 6349.570241 C = 7150.182777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.073 4.073 6 C -0.174 4.174 7 C 0.124 3.876 8 O -0.483 6.483 9 C 0.043 3.957 10 O -0.305 6.305 11 C 0.056 3.944 12 C 0.018 3.982 13 N -0.466 5.466 14 C 0.132 3.868 15 C -0.511 4.511 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.000 4.000 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.390 0.610 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.032 0.968 35 H -0.006 1.006 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 21.742 5.536 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.081 3.919 4 C -0.229 4.229 5 C -0.091 4.091 6 C -0.193 4.193 7 C 0.079 3.921 8 O -0.293 6.293 9 C -0.002 4.002 10 O -0.221 6.221 11 C 0.000 4.000 12 C -0.111 4.111 13 N -0.191 5.191 14 C 0.005 3.995 15 C -0.549 4.549 16 H 0.097 0.903 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.129 4.129 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.247 0.753 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.012 0.988 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.968 21.188 5.570 22.464 hybrid contribution 0.285 -0.428 0.827 0.974 sum -4.683 20.760 6.397 22.222 Atomic orbital electron populations 1.23142 0.78330 1.04533 1.01016 1.86284 1.21221 1.25525 1.87728 1.19368 0.91369 0.85260 0.95863 1.21210 1.00300 0.91809 1.09583 1.20791 0.93902 0.97145 0.97309 1.21231 0.93929 0.97871 1.06291 1.18472 0.83623 0.90660 0.99360 1.84867 1.15297 1.95905 1.33277 1.18366 0.87060 0.87108 1.07674 1.86305 1.69137 1.37251 1.29379 1.24746 0.96777 0.94555 0.83911 1.24135 0.94782 0.92662 0.99501 1.68486 1.02715 1.04373 1.43478 1.20669 0.97875 0.86841 0.94164 1.20953 1.18491 0.89861 1.25629 0.90316 1.24898 0.95785 0.96706 0.95833 1.69897 1.38987 1.02203 1.42805 0.86847 0.82731 0.78407 0.81724 1.20230 1.21083 1.19105 1.24244 0.95771 0.94914 0.97938 0.92590 0.92733 0.87736 0.84832 0.85144 0.84960 0.75331 0.89580 0.90339 0.89974 0.94976 0.98829 0.92646 0.89603 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.25 10.28 -34.35 -0.35 -4.60 16 3 C 0.13 1.75 6.70 -39.15 -0.26 1.49 16 4 C -0.21 -2.17 9.04 -39.42 -0.36 -2.53 16 5 C -0.07 -0.66 10.04 -39.59 -0.40 -1.06 16 6 C -0.17 -1.76 9.98 -39.42 -0.39 -2.15 16 7 C 0.12 1.57 6.71 -39.15 -0.26 1.31 16 8 O -0.48 -5.74 13.29 -34.27 -0.46 -6.20 16 9 C 0.04 0.65 5.64 -39.03 -0.22 0.43 16 10 O -0.31 -5.31 9.65 -45.29 -0.44 -5.75 16 11 C 0.06 0.95 4.56 -25.80 -0.12 0.83 16 12 C 0.02 0.37 7.29 -2.77 -0.02 0.35 16 13 N -0.47 -10.23 6.25 -240.00 -1.50 -11.73 16 14 C 0.13 3.33 3.65 -4.97 -0.02 3.31 16 15 C -0.51 -14.96 9.39 -34.44 -0.32 -15.28 16 16 H 0.08 2.50 8.05 -52.49 -0.42 2.08 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 19 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.00 0.01 7.80 -2.77 -0.02 -0.01 16 24 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 25 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 28 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.39 2.90 9.06 45.56 0.41 3.31 16 31 H 0.09 1.30 7.96 -51.92 -0.41 0.88 16 32 H 0.08 1.73 7.78 -51.93 -0.40 1.33 16 33 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 35 H -0.01 -0.15 7.12 -51.93 -0.37 -0.52 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.34 7.80 -51.93 -0.40 0.93 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -34.80 323.16 -7.65 -42.46 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.38 Total: 0.96 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.50 Total: -10.13 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.73 Total: -38.92 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.25 Total: -16.55 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.80 -7.65 -42.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227481583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.606 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds