Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99787 * 2 1 4 4 C 1.38691 * 120.04190 * 359.72100 * 3 2 1 5 5 C 1.38210 * 120.08393 * 179.77117 * 4 3 2 6 6 C 1.38255 * 120.18169 * 0.50777 * 5 4 3 7 7 C 1.38651 * 120.08754 * 359.74893 * 6 5 4 8 8 O 1.35987 * 120.04279 * 180.02562 * 7 6 5 9 9 C 1.38955 * 120.04598 * 180.02562 * 3 2 1 10 10 O 1.36093 * 120.08590 * 359.95336 * 9 3 2 11 11 C 1.42902 * 117.00500 * 90.00287 * 10 9 3 12 12 C 1.53931 * 113.73427 * 246.72929 * 11 10 9 13 13 N 1.47956 * 86.17950 * 221.91517 * 12 11 10 14 14 C 1.46903 * 111.00240 * 137.58006 * 13 12 11 15 15 C 1.50699 * 109.47188 * 70.63880 * 14 13 12 16 16 H 1.08002 * 119.99589 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00078 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99714 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47042 * 90.00413 * 19 17 15 21 21 H 1.48500 * 109.47101 * 210.00075 * 19 17 15 22 22 H 1.48494 * 109.47469 * 330.00305 * 19 17 15 23 23 C 1.47960 * 90.76505 * 24.68797 * 13 12 11 24 24 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 25 25 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.07993 * 119.95913 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.91060 * 180.25988 * 5 4 3 29 29 H 1.07995 * 119.95556 * 179.76381 * 6 5 4 30 30 H 0.96702 * 114.00308 * 269.97783 * 8 7 6 31 31 H 1.09007 * 112.93445 * 18.42948 * 11 10 9 32 32 H 1.09000 * 113.75809 * 336.23320 * 12 11 10 33 33 H 1.09003 * 113.76192 * 107.59618 * 12 11 10 34 34 H 1.09001 * 109.47489 * 190.64362 * 14 13 12 35 35 H 1.09003 * 109.47112 * 310.64555 * 14 13 12 36 36 H 0.96996 * 119.99569 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.76325 * 220.99576 * 23 13 12 38 38 H 1.09001 * 113.85878 * 89.63876 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3755 -0.0058 5 6 1.9184 3.6074 -0.0011 6 6 3.2987 3.6853 -0.0011 7 6 4.0603 2.5266 -0.0006 8 8 5.4179 2.6042 0.0000 9 6 3.4340 1.2857 -0.0005 10 8 4.1779 0.1461 -0.0001 11 6 4.5322 -0.3980 -1.2731 12 6 3.8730 -1.7567 -1.5713 13 7 5.1872 -2.1630 -2.1163 14 6 5.5324 -3.5275 -1.6958 15 6 4.6407 -4.5130 -2.4063 16 1 3.8927 -4.1607 -3.1012 17 6 4.7799 -5.8641 -2.1695 18 7 4.0020 -6.7240 -2.7900 19 14 6.0742 -6.4732 -0.9682 20 1 5.4889 -6.5471 0.3947 21 1 6.5376 -7.8221 -1.3817 22 1 7.2250 -5.5347 -0.9624 23 6 5.8703 -1.1589 -1.2711 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2134 2.3190 -0.0100 28 1 1.3281 4.5118 -0.0014 29 1 3.7844 4.6498 -0.0012 30 1 5.8110 2.6262 -0.8833 31 1 4.4393 0.3241 -2.0844 32 1 3.5787 -2.3075 -0.6780 33 1 3.0832 -1.7066 -2.3209 34 1 6.5732 -3.7327 -1.9466 35 1 5.3927 -3.6222 -0.6189 36 1 4.1002 -7.6745 -2.6236 37 1 6.6763 -0.6311 -1.7808 38 1 6.1611 -1.5332 -0.2896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227481583.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -69.743988 kcal Electronic energy + Delta-G solvation = -21861.395958 eV Core-core repulsion = 18477.608717 eV Total energy + Delta-G solvation = -3383.787241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77486 -40.67579 -39.43904 -37.84040 -36.92384 -34.95177 -31.85804 -30.68586 -30.28477 -28.12531 -27.34858 -26.87320 -23.85711 -23.22647 -22.86763 -20.97972 -19.91228 -19.07322 -18.84062 -18.06057 -17.65507 -17.20607 -16.61776 -16.47749 -16.14621 -15.83062 -15.54463 -15.33795 -15.10686 -14.75586 -14.08134 -13.94689 -13.77881 -13.58737 -13.26916 -13.03927 -12.95811 -12.73448 -12.64500 -12.22996 -11.93242 -11.83348 -11.79113 -11.48063 -11.42956 -10.85097 -10.67295 -9.83385 -9.58376 -9.17403 -8.34006 -6.38746 0.05452 0.28332 1.31729 1.32964 1.44494 2.22785 2.30451 2.33449 2.75724 2.98823 3.16492 3.30976 3.47225 3.90444 3.92525 3.99714 4.14113 4.26153 4.37570 4.38075 4.44402 4.47770 4.60077 4.62675 4.69163 4.72890 4.76821 4.81789 4.98261 5.17399 5.25902 5.33144 5.38008 5.60581 5.66327 5.91574 6.17705 6.43261 6.54629 6.65743 6.86929 7.25006 8.82786 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.004409 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.577807 B = 6349.570241 C = 7150.182777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.108 3.892 4 C -0.208 4.208 5 C -0.059 4.059 6 C -0.172 4.172 7 C 0.120 3.880 8 O -0.497 6.497 9 C -0.003 4.003 10 O -0.323 6.323 11 C 0.081 3.919 12 C 0.013 3.987 13 N -0.484 5.484 14 C 0.142 3.858 15 C -0.523 4.523 16 H 0.034 0.966 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.249 1.249 23 C 0.005 3.995 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.159 0.841 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.408 0.592 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.036 0.964 35 H -0.008 1.008 36 H 0.269 0.731 37 H 0.119 0.881 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 24.516 6.599 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.062 3.938 4 C -0.227 4.227 5 C -0.076 4.076 6 C -0.190 4.190 7 C 0.075 3.925 8 O -0.309 6.309 9 C -0.048 4.048 10 O -0.239 6.239 11 C 0.025 3.975 12 C -0.117 4.117 13 N -0.208 5.208 14 C 0.014 3.986 15 C -0.562 4.562 16 H 0.053 0.947 17 C -0.187 4.187 18 N -0.585 5.585 19 Si 0.771 3.229 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.172 1.172 23 C -0.123 4.123 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.177 0.823 28 H 0.188 0.812 29 H 0.176 0.824 30 H 0.267 0.733 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.010 0.990 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.360 23.994 6.623 25.271 hybrid contribution -0.054 -1.158 0.454 1.245 sum -4.414 22.837 7.076 24.312 Atomic orbital electron populations 1.23371 0.76386 1.05176 1.02765 1.86223 1.23523 1.26821 1.88130 1.19644 0.91371 0.86043 0.96750 1.21549 1.01501 0.91145 1.08489 1.21297 0.93848 0.98007 0.94495 1.21565 0.94410 0.97956 1.05109 1.18654 0.84006 0.90631 0.99233 1.84812 1.15233 1.95863 1.35016 1.18823 0.87753 0.86986 1.11242 1.86265 1.69717 1.38824 1.29062 1.24391 0.94802 0.93273 0.85039 1.24059 0.94257 0.95277 0.98072 1.68387 1.04127 1.03433 1.44846 1.20435 0.96839 0.87966 0.93313 1.21159 1.18403 0.91309 1.25287 0.94724 1.25855 0.98244 0.96742 0.97826 1.70042 1.41016 1.02805 1.44652 0.85703 0.79979 0.78295 0.78951 1.19396 1.20058 1.17235 1.24309 0.97010 0.93684 0.97333 0.90913 0.90749 0.87843 0.82313 0.81179 0.82354 0.73316 0.87531 0.92935 0.90987 0.94629 0.98983 0.92226 0.86343 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -9.82 10.28 -79.64 -0.82 -10.64 16 3 C 0.11 2.89 6.70 22.55 0.15 3.04 16 4 C -0.21 -3.75 9.04 22.37 0.20 -3.54 16 5 C -0.06 -0.82 10.04 22.27 0.22 -0.60 16 6 C -0.17 -2.87 9.98 22.37 0.22 -2.65 16 7 C 0.12 2.82 6.71 22.55 0.15 2.98 16 8 O -0.50 -10.89 13.29 -79.48 -1.06 -11.94 16 9 C 0.00 -0.09 5.64 22.62 0.13 0.03 16 10 O -0.32 -11.34 9.65 -70.46 -0.68 -12.02 16 11 C 0.08 2.75 4.56 31.24 0.14 2.89 16 12 C 0.01 0.53 7.29 86.40 0.63 1.16 16 13 N -0.48 -21.54 6.25 -916.46 -5.73 -27.27 16 14 C 0.14 7.28 3.65 85.56 0.31 7.59 16 15 C -0.52 -31.82 9.39 25.60 0.24 -31.58 16 16 H 0.03 2.34 8.05 -2.91 -0.02 2.32 16 17 C 0.01 0.67 5.47 84.65 0.46 1.13 16 18 N -0.94 -60.46 13.96 21.45 0.30 -60.17 16 19 Si 0.95 45.55 27.47 68.60 1.88 47.44 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 23 C 0.01 0.18 7.80 86.40 0.67 0.85 16 24 H 0.07 1.06 7.65 -2.39 -0.02 1.04 16 25 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 26 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.16 1.93 6.29 -2.91 -0.02 1.91 16 28 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 29 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.41 5.22 9.06 -74.06 -0.67 4.55 16 31 H 0.11 3.13 7.96 -2.38 -0.02 3.11 16 32 H 0.05 2.47 7.78 -2.39 -0.02 2.46 16 33 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.04 1.79 7.20 -2.39 -0.02 1.77 16 35 H -0.01 -0.38 7.12 -2.39 -0.02 -0.40 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.07 2.43 7.80 -2.39 -0.02 2.42 16 Total: -1.00 -78.74 323.16 -1.10 -79.84 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.35 Total: 12.02 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.65 Total: -17.26 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -5.43 Total: -87.44 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -2.55 Total: -34.60 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.44 kcal Total: -78.74 -1.10 -79.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227481583.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.097 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds