Wall clock time and date at job start Wed Apr 15 2020 11:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 117.00413 * 2 1 4 4 C 1.38701 * 119.99686 * 0.02562 * 3 2 1 5 5 C 1.38651 * 119.99676 * 180.02562 * 4 3 2 6 6 O 1.35895 * 119.99785 * 179.97438 * 5 4 3 7 7 C 1.38693 * 120.00394 * 359.76808 * 5 4 3 8 8 C 1.38660 * 119.99722 * 0.46349 * 7 5 4 9 9 O 1.35899 * 120.00115 * 179.79119 * 8 7 5 10 10 C 1.42898 * 117.00171 * 173.76799 * 9 8 7 11 11 C 1.53510 * 114.17047 * 201.71570 * 10 9 8 12 12 N 1.47481 * 87.93053 * 220.33092 * 11 10 9 13 13 C 1.46895 * 111.00081 * 138.70264 * 12 11 10 14 14 C 1.50706 * 109.46905 * 169.99514 * 13 12 11 15 15 H 1.07991 * 120.00246 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99806 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00040 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47550 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47132 * 300.00070 * 18 16 14 21 21 H 1.48503 * 109.47412 * 59.99992 * 18 16 14 22 22 C 1.47478 * 87.83685 * 27.00786 * 12 11 10 23 23 C 1.38655 * 120.00197 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47020 * 59.99722 * 1 2 3 25 25 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46758 * 299.99750 * 1 2 3 27 27 H 1.08000 * 119.99652 * 359.97438 * 4 3 2 28 28 H 0.96701 * 114.00008 * 90.00138 * 6 5 4 29 29 H 1.07998 * 120.00569 * 180.25359 * 7 5 4 30 30 H 1.09003 * 113.38217 * 334.79289 * 10 9 8 31 31 H 1.08996 * 113.47742 * 105.55870 * 11 10 9 32 32 H 1.09002 * 113.47649 * 335.09025 * 11 10 9 33 33 H 1.09005 * 109.47456 * 50.00286 * 13 12 11 34 34 H 1.08995 * 109.47278 * 289.99878 * 13 12 11 35 35 H 0.97003 * 119.99644 * 180.02562 * 17 16 14 36 36 H 1.08997 * 113.47477 * 87.75829 * 22 12 11 37 37 H 1.09001 * 113.47715 * 218.22170 * 22 12 11 38 38 H 1.08000 * 120.00122 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3740 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7491 0.0000 7 6 3.3052 3.6820 0.0038 8 6 4.0604 2.5191 -0.0016 9 8 5.4175 2.5901 -0.0022 10 6 6.1316 1.3595 0.1304 11 6 7.5701 1.5195 0.6419 12 7 7.9733 0.4841 -0.3278 13 6 9.2433 0.8363 -0.9765 14 6 9.7467 -0.3427 -1.7688 15 1 9.1796 -1.2615 -1.7888 16 6 10.9306 -0.2479 -2.4690 17 7 11.6210 0.8713 -2.4451 18 14 11.5541 -1.7090 -3.4517 19 1 12.8381 -1.3531 -4.1074 20 1 11.7670 -2.8631 -2.5416 21 1 10.5534 -2.0729 -4.4867 22 6 6.8247 0.8931 -1.1575 23 6 3.4307 1.2833 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2121 2.3175 0.0005 28 1 0.9662 5.0792 0.8834 29 1 3.7956 4.6442 0.0075 30 1 5.5616 0.5810 0.6375 31 1 7.6980 1.2151 1.6807 32 1 7.9986 2.4999 0.4335 33 1 9.9778 1.1035 -0.2166 34 1 9.0874 1.6832 -1.6447 35 1 12.4537 0.9380 -2.9381 36 1 7.0542 1.7064 -1.8460 37 1 6.3209 0.0578 -1.6438 38 1 4.0189 0.3775 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230709284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:58 Heat of formation + Delta-G solvation = -44.974843 kcal Electronic energy + Delta-G solvation = -21041.761920 eV Core-core repulsion = 17659.048749 eV Total energy + Delta-G solvation = -3382.713170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82355 -39.79496 -38.58946 -37.73485 -35.22001 -32.88551 -30.32395 -29.84606 -28.98328 -27.41717 -25.60935 -25.29092 -23.08437 -22.38414 -21.31496 -19.59631 -19.34979 -17.44601 -16.88966 -16.73471 -16.26998 -16.15207 -16.01944 -15.32377 -15.14749 -14.69291 -14.48083 -14.34646 -13.87476 -13.31955 -12.84023 -12.67344 -12.37461 -12.13393 -12.10172 -11.88832 -11.62177 -11.18544 -11.08387 -11.01832 -10.82992 -10.62168 -10.27518 -9.96939 -9.81238 -9.27880 -8.55631 -8.45952 -8.23468 -8.02191 -6.05384 -4.07135 1.05070 1.27131 2.89293 3.18059 3.33668 3.37152 3.40654 3.47113 4.01978 4.41519 4.65304 4.74890 4.79801 4.82408 4.86764 4.94532 5.03926 5.16527 5.19444 5.21713 5.29917 5.39618 5.67523 5.91391 5.94953 6.05141 6.11244 6.18798 6.23756 6.31314 6.33921 6.48773 7.04235 7.12493 7.36409 7.48487 7.58654 7.79430 8.04495 8.39283 8.99662 9.57022 11.05694 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.003275 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.779644 B = 8546.808821 C = 9192.612659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.182 3.818 4 C -0.278 4.278 5 C 0.180 3.820 6 O -0.496 6.496 7 C -0.219 4.219 8 C 0.195 3.805 9 O -0.294 6.294 10 C 0.039 3.961 11 C 0.004 3.996 12 N -0.460 5.460 13 C 0.161 3.839 14 C -0.508 4.508 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.004 4.004 23 C -0.251 4.251 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.394 0.606 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.007 0.993 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.809 4.046 7.713 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.136 3.864 4 C -0.297 4.297 5 C 0.135 3.865 6 O -0.307 6.307 7 C -0.238 4.238 8 C 0.148 3.852 9 O -0.206 6.206 10 C -0.017 4.017 11 C -0.125 4.125 12 N -0.184 5.184 13 C 0.035 3.965 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.729 3.271 19 H -0.213 1.213 20 H -0.201 1.201 21 H -0.202 1.202 22 C -0.133 4.133 23 C -0.270 4.270 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.250 0.750 29 H 0.156 0.844 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.254 3.347 7.210 23.631 hybrid contribution 0.140 0.175 -0.431 0.486 sum -22.114 3.522 6.779 23.396 Atomic orbital electron populations 1.23086 0.78191 1.04037 1.01484 1.86107 1.21548 1.26623 1.88210 1.18402 0.91342 0.83836 0.92853 1.21254 1.00519 0.91640 1.16335 1.17682 0.88341 0.84988 0.95480 1.84793 1.72368 1.39843 1.33654 1.20530 0.92397 0.97978 1.12884 1.18414 0.83336 0.92292 0.91189 1.86228 1.14188 1.34187 1.85998 1.24637 0.91952 0.84992 1.00125 1.24041 0.91041 0.97436 0.99960 1.69035 1.03798 1.37289 1.08320 1.20289 0.85728 0.96495 0.93968 1.21043 1.06179 0.98925 1.28481 0.91810 1.25008 0.96638 0.96226 0.96806 1.69949 1.15573 1.25701 1.42675 0.86506 0.77919 0.82575 0.80105 1.21313 1.20105 1.20207 1.24293 0.93775 0.99981 0.95260 1.20535 0.92515 0.98389 1.15569 0.92457 0.88102 0.92578 0.84908 0.74981 0.84435 0.87098 0.89575 0.90804 0.95007 0.97541 0.92778 0.90614 0.89932 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.56 10.49 -19.41 -0.20 -3.76 16 3 C 0.18 2.24 6.68 -39.26 -0.26 1.98 16 4 C -0.28 -3.03 8.97 -39.26 -0.35 -3.39 16 5 C 0.18 2.04 6.70 -39.26 -0.26 1.78 16 6 O -0.50 -4.64 13.50 -19.41 -0.26 -4.90 16 7 C -0.22 -2.79 9.92 -39.26 -0.39 -3.18 16 8 C 0.19 2.76 6.67 -39.26 -0.26 2.50 16 9 O -0.29 -4.64 10.18 -19.42 -0.20 -4.84 16 10 C 0.04 0.63 4.01 -26.20 -0.10 0.52 16 11 C 0.00 0.08 7.52 -7.55 -0.06 0.02 16 12 N -0.46 -9.98 6.32 -246.12 -1.55 -11.53 16 13 C 0.16 4.22 4.57 -4.98 -0.02 4.20 16 14 C -0.51 -14.54 9.39 -34.44 -0.32 -14.86 16 15 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.00 -0.07 7.55 -7.55 -0.06 -0.13 16 23 C -0.25 -3.40 8.96 -39.26 -0.35 -3.75 16 24 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 28 H 0.39 1.61 9.06 45.56 0.41 2.03 16 29 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.59 6.00 -51.93 -0.31 1.28 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 33 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.14 1.93 5.91 -52.49 -0.31 1.62 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -32.89 322.75 -7.35 -40.24 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.16 Total: 0.91 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.55 Total: -11.66 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.82 Total: -37.71 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.66 Total: -13.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.89 -7.35 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230709284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.734 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds