Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 117.00413 * 2 1 4 4 C 1.38701 * 119.99686 * 0.02562 * 3 2 1 5 5 C 1.38651 * 119.99676 * 180.02562 * 4 3 2 6 6 O 1.35895 * 119.99785 * 179.97438 * 5 4 3 7 7 C 1.38693 * 120.00394 * 359.76808 * 5 4 3 8 8 C 1.38660 * 119.99722 * 0.46349 * 7 5 4 9 9 O 1.35899 * 120.00115 * 179.79119 * 8 7 5 10 10 C 1.42898 * 117.00171 * 173.76799 * 9 8 7 11 11 C 1.53510 * 114.17047 * 201.71570 * 10 9 8 12 12 N 1.47481 * 87.93053 * 220.33092 * 11 10 9 13 13 C 1.46895 * 111.00081 * 138.70264 * 12 11 10 14 14 C 1.50706 * 109.46905 * 169.99514 * 13 12 11 15 15 H 1.07991 * 120.00246 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99806 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00040 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47550 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47132 * 300.00070 * 18 16 14 21 21 H 1.48503 * 109.47412 * 59.99992 * 18 16 14 22 22 C 1.47478 * 87.83685 * 27.00786 * 12 11 10 23 23 C 1.38655 * 120.00197 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47020 * 59.99722 * 1 2 3 25 25 H 1.08997 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46758 * 299.99750 * 1 2 3 27 27 H 1.08000 * 119.99652 * 359.97438 * 4 3 2 28 28 H 0.96701 * 114.00008 * 90.00138 * 6 5 4 29 29 H 1.07998 * 120.00569 * 180.25359 * 7 5 4 30 30 H 1.09003 * 113.38217 * 334.79289 * 10 9 8 31 31 H 1.08996 * 113.47742 * 105.55870 * 11 10 9 32 32 H 1.09002 * 113.47649 * 335.09025 * 11 10 9 33 33 H 1.09005 * 109.47456 * 50.00286 * 13 12 11 34 34 H 1.08995 * 109.47278 * 289.99878 * 13 12 11 35 35 H 0.97003 * 119.99644 * 180.02562 * 17 16 14 36 36 H 1.08997 * 113.47477 * 87.75829 * 22 12 11 37 37 H 1.09001 * 113.47715 * 218.22170 * 22 12 11 38 38 H 1.08000 * 120.00122 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3740 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7491 0.0000 7 6 3.3052 3.6820 0.0038 8 6 4.0604 2.5191 -0.0016 9 8 5.4175 2.5901 -0.0022 10 6 6.1316 1.3595 0.1304 11 6 7.5701 1.5195 0.6419 12 7 7.9733 0.4841 -0.3278 13 6 9.2433 0.8363 -0.9765 14 6 9.7467 -0.3427 -1.7688 15 1 9.1796 -1.2615 -1.7888 16 6 10.9306 -0.2479 -2.4690 17 7 11.6210 0.8713 -2.4451 18 14 11.5541 -1.7090 -3.4517 19 1 12.8381 -1.3531 -4.1074 20 1 11.7670 -2.8631 -2.5416 21 1 10.5534 -2.0729 -4.4867 22 6 6.8247 0.8931 -1.1575 23 6 3.4307 1.2833 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2121 2.3175 0.0005 28 1 0.9662 5.0792 0.8834 29 1 3.7956 4.6442 0.0075 30 1 5.5616 0.5810 0.6375 31 1 7.6980 1.2151 1.6807 32 1 7.9986 2.4999 0.4335 33 1 9.9778 1.1035 -0.2166 34 1 9.0874 1.6832 -1.6447 35 1 12.4537 0.9380 -2.9381 36 1 7.0542 1.7064 -1.8460 37 1 6.3209 0.0578 -1.6438 38 1 4.0189 0.3775 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230709284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = -71.315940 kcal Electronic energy + Delta-G solvation = -21042.904155 eV Core-core repulsion = 17659.048749 eV Total energy + Delta-G solvation = -3383.855406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91738 -40.98815 -39.48203 -38.88023 -36.18467 -35.02248 -31.58405 -30.91108 -30.38078 -28.06947 -27.35186 -26.90055 -24.45031 -23.39922 -22.76834 -21.02286 -20.31594 -18.66068 -18.27745 -17.79906 -17.67621 -17.10199 -16.84468 -16.74332 -16.44384 -16.21458 -15.65317 -15.51481 -14.99517 -14.89467 -14.23779 -14.02600 -13.76819 -13.44942 -13.34735 -13.13229 -12.85253 -12.68212 -12.49792 -12.28909 -12.11488 -11.90274 -11.87499 -11.64947 -11.31722 -11.15220 -10.63624 -9.83655 -9.50024 -9.19606 -8.25087 -6.36029 0.14277 0.32484 1.39750 1.43389 1.51529 1.89823 2.28759 2.39060 2.53081 3.07060 3.18504 3.23565 3.33188 3.74809 3.96306 4.03864 4.10052 4.14063 4.30348 4.38679 4.40720 4.41561 4.48018 4.57883 4.63666 4.75272 4.78194 4.83122 5.00060 5.06789 5.22286 5.28398 5.42055 5.51514 5.69588 5.99846 6.22440 6.33239 6.37362 6.77401 6.80458 7.33562 8.86195 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.003275 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.779644 B = 8546.808821 C = 9192.612659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.178 3.822 4 C -0.270 4.270 5 C 0.189 3.811 6 O -0.500 6.500 7 C -0.230 4.230 8 C 0.175 3.825 9 O -0.307 6.307 10 C 0.069 3.931 11 C 0.002 3.998 12 N -0.474 5.474 13 C 0.176 3.824 14 C -0.530 4.530 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.281 1.281 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.010 4.010 23 C -0.265 4.265 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.418 0.582 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.008 0.992 34 H -0.019 1.019 35 H 0.266 0.734 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.129 3.298 7.994 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.132 3.868 4 C -0.289 4.289 5 C 0.144 3.856 6 O -0.314 6.314 7 C -0.250 4.250 8 C 0.129 3.871 9 O -0.219 6.219 10 C 0.013 3.987 11 C -0.127 4.127 12 N -0.198 5.198 13 C 0.049 3.951 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.206 1.206 20 H -0.191 1.191 21 H -0.193 1.193 22 C -0.139 4.139 23 C -0.284 4.284 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.090 0.910 27 H 0.177 0.823 28 H 0.279 0.721 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.026 0.974 34 H -0.002 1.002 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.617 2.612 7.520 25.872 hybrid contribution 0.664 0.488 -0.480 0.953 sum -23.953 3.099 7.041 25.158 Atomic orbital electron populations 1.23424 0.75881 1.05833 1.02638 1.86091 1.23968 1.26268 1.87965 1.18478 0.91096 0.84756 0.92466 1.21501 1.01769 0.90846 1.14813 1.17686 0.87859 0.85836 0.94247 1.84739 1.71751 1.39066 1.35876 1.20681 0.93236 0.97651 1.13400 1.18570 0.82462 0.93234 0.92883 1.86185 1.15501 1.33614 1.86644 1.24267 0.91392 0.85662 0.97394 1.24095 0.92256 0.96069 1.00283 1.68913 1.02511 1.38831 1.09499 1.19947 0.87481 0.94943 0.92750 1.21390 1.06746 0.99464 1.29244 0.92031 1.25962 0.96711 0.99268 0.97754 1.70075 1.16016 1.27844 1.43483 0.85380 0.77487 0.78827 0.78604 1.20578 1.19126 1.19278 1.24307 0.93376 0.99818 0.96407 1.20562 0.93463 0.97914 1.16505 0.91625 0.86190 0.90983 0.82324 0.72107 0.84249 0.84875 0.87262 0.91670 0.97438 1.00161 0.92495 0.92403 0.89217 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.86 10.49 -92.37 -0.97 -7.83 16 3 C 0.18 4.08 6.68 22.48 0.15 4.23 16 4 C -0.27 -5.17 8.97 22.48 0.20 -4.97 16 5 C 0.19 3.86 6.70 22.48 0.15 4.01 16 6 O -0.50 -7.92 13.50 -92.37 -1.25 -9.17 16 7 C -0.23 -5.65 9.92 22.48 0.22 -5.43 16 8 C 0.17 4.87 6.67 22.48 0.15 5.02 16 9 O -0.31 -9.71 10.18 -92.41 -0.94 -10.65 16 10 C 0.07 2.20 4.01 30.94 0.12 2.33 16 11 C 0.00 0.07 7.52 83.57 0.63 0.69 16 12 N -0.47 -21.04 6.32 -932.98 -5.89 -26.93 16 13 C 0.18 9.61 4.57 85.56 0.39 10.00 16 14 C -0.53 -31.07 9.39 25.60 0.24 -30.83 16 15 H 0.06 3.55 7.81 -2.92 -0.02 3.53 16 16 C 0.00 0.07 5.46 84.65 0.46 0.54 16 17 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 18 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C -0.01 -0.38 7.55 83.57 0.63 0.25 16 23 C -0.27 -6.96 8.96 22.48 0.20 -6.76 16 24 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 25 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 27 H 0.16 2.14 6.29 -2.91 -0.02 2.12 16 28 H 0.42 2.09 9.06 -74.06 -0.67 1.42 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.13 3.67 6.00 -2.39 -0.01 3.65 16 31 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.06 2.46 7.91 -2.39 -0.02 2.44 16 33 H 0.01 0.44 8.08 -2.38 -0.02 0.42 16 34 H -0.02 -1.14 7.30 -2.39 -0.02 -1.15 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.06 2.45 7.42 -2.39 -0.02 2.43 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.14 3.66 5.91 -2.91 -0.02 3.65 16 Total: -1.00 -71.71 322.75 -1.66 -73.37 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.41 Total: 10.60 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.67 Total: -19.61 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -5.61 Total: -83.73 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -3.16 Total: -27.65 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.71 -1.66 -73.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230709284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.053 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds