Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 117.00124 * 2 1 4 4 C 1.38569 * 120.07197 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.92780 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00165 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00458 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47491 * 119.99896 * 16 14 12 19 19 H 1.48511 * 109.47242 * 239.99873 * 16 14 12 20 20 C 1.38250 * 120.14712 * 0.28051 * 5 4 3 21 21 C 1.38244 * 120.14516 * 359.44406 * 20 5 4 22 22 C 1.38566 * 119.99897 * 0.55115 * 21 20 5 23 23 O 1.35994 * 120.07374 * 179.70229 * 22 21 20 24 24 H 1.09006 * 109.46849 * 299.99952 * 1 2 3 25 25 H 1.09003 * 109.47140 * 59.99349 * 1 2 3 26 26 H 1.08997 * 109.47615 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00167 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 330.00458 * 6 5 4 29 29 H 1.08994 * 109.47551 * 210.00110 * 6 5 4 30 30 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 31 31 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 32 32 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 33 33 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 34 34 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.08007 * 119.92728 * 179.70547 * 20 5 4 37 37 H 1.08002 * 119.99813 * 180.25691 * 21 20 5 38 38 H 0.96695 * 114.00355 * 270.03022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1017 4.8696 0.0011 7 6 0.8277 5.2905 1.4219 8 8 1.2570 4.6296 2.3438 9 7 0.1107 6.4049 1.6682 10 6 -0.1506 6.8174 3.0494 11 6 -0.9796 8.1033 3.0496 12 6 -1.2479 8.5280 4.4703 13 1 -0.8657 7.9394 5.2912 14 6 -1.9822 9.6674 4.7224 15 7 -2.4480 10.3839 3.7228 16 14 -2.3140 10.1942 6.4835 17 1 -1.6852 9.2254 7.4169 18 1 -1.7420 11.5454 6.7122 19 1 -3.7795 10.2304 6.7216 20 6 3.3029 3.6798 -0.0048 21 6 4.0603 2.5233 0.0004 22 6 3.4359 1.2862 0.0000 23 8 4.1795 0.1476 -0.0011 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2147 2.3197 0.0005 28 1 0.1576 4.6898 -0.5131 29 1 1.6504 5.6591 -0.5123 30 1 -0.2324 6.9337 0.9310 31 1 -0.7008 6.0307 3.5657 32 1 0.7956 6.9946 3.5609 33 1 -0.4298 8.8902 2.5332 34 1 -1.9258 7.9256 2.5384 35 1 -2.9649 11.1854 3.9001 36 1 3.7908 4.6434 -0.0092 37 1 5.1386 2.5839 0.0000 38 1 4.3945 -0.1810 -0.8847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447634001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -105.818103 kcal Electronic energy + Delta-G solvation = -20697.091228 eV Core-core repulsion = 17311.739697 eV Total energy + Delta-G solvation = -3385.351532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62835 -39.26080 -37.92615 -36.80707 -34.84543 -32.89210 -32.07562 -30.34725 -29.72130 -28.05249 -26.66452 -24.58158 -22.52289 -22.08410 -20.97033 -20.08220 -18.75183 -17.49535 -16.86082 -16.67793 -16.29387 -16.02978 -15.43450 -15.13943 -15.10019 -14.48327 -14.33132 -14.23681 -13.85867 -13.35821 -13.27356 -12.43449 -12.38293 -12.32363 -12.23006 -11.67911 -11.44535 -11.22094 -11.18649 -11.06235 -10.71387 -10.64235 -10.35976 -9.82946 -9.50901 -9.23246 -8.85914 -8.56976 -8.37965 -8.19865 -6.12068 -4.14765 1.04904 1.26977 2.97462 3.05400 3.26718 3.34049 3.36733 3.40727 3.82595 4.06125 4.40398 4.49873 4.68031 4.86034 4.96666 4.98972 5.14639 5.21593 5.25227 5.28708 5.35994 5.40001 5.46163 5.73546 6.00088 6.14135 6.31809 6.32299 6.42781 6.54698 6.71474 6.89236 7.04124 7.49022 7.58640 7.59597 7.86431 7.98524 8.25384 8.63359 8.91591 9.50345 10.99579 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.002795 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.751970 B =10016.337460 C =10233.445545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.103 3.897 4 C -0.180 4.180 5 C -0.026 4.026 6 C -0.107 4.107 7 C 0.505 3.495 8 O -0.541 6.541 9 N -0.723 5.723 10 C 0.122 3.878 11 C 0.012 3.988 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.126 4.126 21 C -0.105 4.105 22 C 0.068 3.932 23 O -0.487 6.487 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.398 0.602 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.104 -16.283 -14.595 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.058 3.942 4 C -0.199 4.199 5 C -0.026 4.026 6 C -0.147 4.147 7 C 0.290 3.710 8 O -0.419 6.419 9 N -0.374 5.374 10 C -0.001 4.001 11 C -0.025 4.025 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.145 4.145 21 C -0.123 4.123 22 C 0.022 3.978 23 O -0.296 6.296 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.149 0.851 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.231 0.769 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 8.343 -16.736 -13.320 22.959 hybrid contribution -0.724 0.802 0.106 1.086 sum 7.619 -15.935 -13.214 22.058 Atomic orbital electron populations 1.23099 0.78439 1.03938 1.01597 1.86122 1.21264 1.26246 1.88727 1.19364 0.91698 0.84758 0.98427 1.20978 1.00031 0.91326 1.07521 1.19129 0.93559 0.93183 0.96767 1.20740 1.01516 0.96377 0.96072 1.20377 0.78834 0.81211 0.90592 1.90717 1.51192 1.53746 1.46197 1.46338 1.54173 1.26051 1.10805 1.21717 0.99975 0.98730 0.79633 1.19325 0.94682 0.90299 0.98183 1.21098 1.33758 1.09243 0.91903 0.92208 1.24999 0.95540 0.96350 0.97431 1.69965 1.36231 1.16394 1.30744 0.86458 0.77990 0.78548 0.84587 1.19564 1.20903 1.20925 1.20810 0.92887 0.98336 1.02446 1.21174 1.00442 0.90768 0.99930 1.17711 0.86096 0.86534 1.07411 1.84912 1.71807 1.39892 1.32951 0.92346 0.92672 0.88209 0.85129 0.88044 0.87702 0.76885 0.92653 0.92579 0.95926 0.95964 0.92890 0.85378 0.84697 0.76328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.79 10.28 -34.23 -0.35 -4.14 16 3 C 0.10 1.34 6.70 -39.12 -0.26 1.07 16 4 C -0.18 -2.23 8.69 -39.46 -0.34 -2.57 16 5 C -0.03 -0.32 4.37 -104.62 -0.46 -0.78 16 6 C -0.11 -1.19 5.83 -29.03 -0.17 -1.36 16 7 C 0.50 8.20 7.82 -10.98 -0.09 8.11 16 8 O -0.54 -11.18 16.03 5.55 0.09 -11.09 16 9 N -0.72 -12.09 5.56 -60.29 -0.33 -12.42 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 11 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 12 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.13 -1.49 9.69 -39.57 -0.38 -1.87 16 21 C -0.10 -1.19 9.98 -39.46 -0.39 -1.59 16 22 C 0.07 0.85 6.72 -39.12 -0.26 0.58 16 23 O -0.49 -5.52 13.29 -34.23 -0.45 -5.98 16 24 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 28 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.40 5.56 8.47 -40.82 -0.35 5.22 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.38 2.37 9.06 45.56 0.41 2.78 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -35.09 332.39 -6.67 -41.76 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.40 Total: 3.47 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.94 Total: -7.69 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.40 Total: -37.64 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.72 Total: -21.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.09 -6.67 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447634001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.058 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds