Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 117.00124 * 2 1 4 4 C 1.38569 * 120.07197 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.92780 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00165 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00458 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47135 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47491 * 119.99896 * 16 14 12 19 19 H 1.48511 * 109.47242 * 239.99873 * 16 14 12 20 20 C 1.38250 * 120.14712 * 0.28051 * 5 4 3 21 21 C 1.38244 * 120.14516 * 359.44406 * 20 5 4 22 22 C 1.38566 * 119.99897 * 0.55115 * 21 20 5 23 23 O 1.35994 * 120.07374 * 179.70229 * 22 21 20 24 24 H 1.09006 * 109.46849 * 299.99952 * 1 2 3 25 25 H 1.09003 * 109.47140 * 59.99349 * 1 2 3 26 26 H 1.08997 * 109.47615 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00167 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 330.00458 * 6 5 4 29 29 H 1.08994 * 109.47551 * 210.00110 * 6 5 4 30 30 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 31 31 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 32 32 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 33 33 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 34 34 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.08007 * 119.92728 * 179.70547 * 20 5 4 37 37 H 1.08002 * 119.99813 * 180.25691 * 21 20 5 38 38 H 0.96695 * 114.00355 * 270.03022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1017 4.8696 0.0011 7 6 0.8277 5.2905 1.4219 8 8 1.2570 4.6296 2.3438 9 7 0.1107 6.4049 1.6682 10 6 -0.1506 6.8174 3.0494 11 6 -0.9796 8.1033 3.0496 12 6 -1.2479 8.5280 4.4703 13 1 -0.8657 7.9394 5.2912 14 6 -1.9822 9.6674 4.7224 15 7 -2.4480 10.3839 3.7228 16 14 -2.3140 10.1942 6.4835 17 1 -1.6852 9.2254 7.4169 18 1 -1.7420 11.5454 6.7122 19 1 -3.7795 10.2304 6.7216 20 6 3.3029 3.6798 -0.0048 21 6 4.0603 2.5233 0.0004 22 6 3.4359 1.2862 0.0000 23 8 4.1795 0.1476 -0.0011 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2147 2.3197 0.0005 28 1 0.1576 4.6898 -0.5131 29 1 1.6504 5.6591 -0.5123 30 1 -0.2324 6.9337 0.9310 31 1 -0.7008 6.0307 3.5657 32 1 0.7956 6.9946 3.5609 33 1 -0.4298 8.8902 2.5332 34 1 -1.9258 7.9256 2.5384 35 1 -2.9649 11.1854 3.9001 36 1 3.7908 4.6434 -0.0092 37 1 5.1386 2.5839 0.0000 38 1 4.3945 -0.1810 -0.8847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001447634001.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -131.624267 kcal Electronic energy + Delta-G solvation = -20698.210268 eV Core-core repulsion = 17311.739697 eV Total energy + Delta-G solvation = -3386.470571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52642 -40.53819 -38.77299 -37.73384 -36.51760 -34.80887 -33.11502 -31.50688 -31.14042 -28.94344 -27.69410 -26.35181 -23.40486 -23.27220 -22.59471 -21.36556 -19.61007 -18.60768 -18.38023 -17.88254 -17.55762 -16.89171 -16.66440 -16.46478 -16.41059 -16.13934 -15.27222 -15.17640 -14.79717 -14.75684 -14.66794 -14.29740 -13.43989 -13.22262 -13.15442 -13.04115 -12.95845 -12.56938 -12.52794 -12.25063 -12.21647 -12.00031 -11.66623 -11.54392 -11.44663 -10.84884 -10.61312 -9.98934 -9.75843 -9.08400 -8.25161 -6.35176 0.15979 0.38669 1.40010 1.41469 1.54229 1.70475 2.21783 2.32054 2.43759 2.75574 3.09727 3.24214 3.60888 3.85569 4.04141 4.12982 4.28748 4.32877 4.33969 4.48857 4.52828 4.56767 4.61466 4.64193 4.69981 4.86222 4.92752 5.13744 5.28613 5.31494 5.50911 5.54458 5.59115 5.72407 5.79215 6.16543 6.26319 6.67950 6.78422 6.88932 7.34166 7.34422 8.86741 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.002795 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.751970 B =10016.337460 C =10233.445545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.085 3.915 4 C -0.188 4.188 5 C -0.043 4.043 6 C -0.094 4.094 7 C 0.505 3.495 8 O -0.588 6.588 9 N -0.717 5.717 10 C 0.141 3.859 11 C 0.023 3.977 12 C -0.547 4.547 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.134 4.134 21 C -0.109 4.109 22 C 0.056 3.944 23 O -0.500 6.500 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.413 0.587 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.211 -16.322 -15.265 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.039 3.961 4 C -0.207 4.207 5 C -0.044 4.044 6 C -0.133 4.133 7 C 0.293 3.707 8 O -0.469 6.469 9 N -0.369 5.369 10 C 0.017 3.983 11 C -0.014 4.014 12 C -0.586 4.586 13 H 0.074 0.926 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.152 4.152 21 C -0.128 4.128 22 C 0.011 3.989 23 O -0.312 6.312 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.139 0.861 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.249 0.751 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 8.447 -16.779 -14.042 23.454 hybrid contribution -0.737 0.742 0.275 1.082 sum 7.710 -16.037 -13.767 22.498 Atomic orbital electron populations 1.23336 0.76803 1.05569 1.01974 1.86091 1.23061 1.26219 1.88800 1.19604 0.92211 0.85221 0.99088 1.21183 1.00713 0.91376 1.07388 1.19349 0.94099 0.93562 0.97358 1.20753 1.03396 0.96731 0.92414 1.21244 0.77165 0.79875 0.92388 1.90701 1.52873 1.55007 1.48285 1.46138 1.54561 1.26777 1.09397 1.21173 0.98374 0.96675 0.82105 1.19128 0.94351 0.91395 0.96537 1.21508 1.34082 1.09687 0.93310 0.92596 1.25841 0.95216 0.96342 1.01672 1.70055 1.36760 1.16870 1.32808 0.85425 0.78061 0.78234 0.79501 1.19159 1.20150 1.20168 1.21108 0.92970 0.99204 1.01909 1.21435 1.01553 0.90360 0.99424 1.17973 0.86347 0.87194 1.07419 1.84841 1.71631 1.39746 1.34983 0.93125 0.91062 0.86055 0.84074 0.85037 0.84465 0.75066 0.93986 0.93889 0.97115 0.97157 0.92511 0.83770 0.82748 0.73947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.85 10.28 -79.63 -0.82 -8.67 16 3 C 0.08 2.14 6.70 22.57 0.15 2.29 16 4 C -0.19 -4.45 8.69 22.35 0.19 -4.26 16 5 C -0.04 -0.99 4.37 -19.86 -0.09 -1.08 16 6 C -0.09 -1.83 5.83 29.10 0.17 -1.66 16 7 C 0.51 15.71 7.82 87.66 0.69 16.40 16 8 O -0.59 -24.14 16.03 -3.04 -0.05 -24.19 16 9 N -0.72 -23.22 5.56 -463.06 -2.57 -25.80 16 10 C 0.14 5.97 5.61 86.38 0.48 6.45 16 11 C 0.02 1.16 5.09 29.85 0.15 1.31 16 12 C -0.55 -30.49 9.11 25.60 0.23 -30.26 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.01 0.45 5.46 84.66 0.46 0.92 16 15 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 16 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 C -0.13 -2.92 9.69 22.27 0.22 -2.71 16 21 C -0.11 -2.36 9.98 22.35 0.22 -2.13 16 22 C 0.06 1.36 6.72 22.57 0.15 1.51 16 23 O -0.50 -10.99 13.29 -79.61 -1.06 -12.05 16 24 H 0.05 0.87 7.66 -2.38 -0.02 0.86 16 25 H 0.07 0.88 7.66 -2.39 -0.02 0.87 16 26 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.14 2.86 6.30 -2.91 -0.02 2.85 16 28 H 0.13 1.82 8.08 -2.38 -0.02 1.80 16 29 H 0.14 1.84 8.08 -2.39 -0.02 1.82 16 30 H 0.41 10.86 8.47 -92.71 -0.79 10.07 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.40 4.63 9.06 -74.06 -0.67 3.95 16 Total: -1.00 -75.73 332.39 1.60 -74.14 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.37 Total: 16.27 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.15 Total: -11.83 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.29 Total: -79.16 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.93 Total: -44.91 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.73 1.60 -74.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447634001.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.487 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds