Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99896 * 2 1 4 4 C 1.52997 * 109.47513 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47404 * 64.99179 * 4 3 2 6 6 C 1.37100 * 120.00784 * 264.75430 * 5 4 3 7 7 H 1.07993 * 120.00101 * 138.05138 * 6 5 4 8 8 C 1.38950 * 119.99417 * 318.05623 * 6 5 4 9 9 N 1.31409 * 120.00195 * 344.92382 * 8 6 5 10 10 Si 1.86801 * 119.99836 * 164.92593 * 8 6 5 11 11 H 1.48505 * 109.47032 * 89.99619 * 10 8 6 12 12 H 1.48494 * 109.47030 * 209.99621 * 10 8 6 13 13 H 1.48496 * 109.47283 * 330.00061 * 10 8 6 14 14 C 1.34779 * 119.99529 * 84.75348 * 5 4 3 15 15 O 1.21297 * 120.00401 * 5.46490 * 14 5 4 16 16 C 1.50709 * 120.00036 * 185.19230 * 14 5 4 17 17 H 1.08999 * 109.46660 * 51.35223 * 16 14 5 18 18 O 1.42902 * 109.47130 * 171.35344 * 16 14 5 19 19 C 1.50700 * 109.47067 * 291.35635 * 16 14 5 20 20 C 1.38237 * 120.00009 * 283.67502 * 19 16 14 21 21 C 1.38228 * 120.00213 * 179.81047 * 20 19 16 22 22 C 1.38238 * 119.99746 * 0.39680 * 21 20 19 23 23 C 1.38234 * 119.99983 * 359.85583 * 22 21 20 24 24 C 1.38234 * 119.99807 * 103.94660 * 19 16 14 25 25 H 1.09008 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47293 * 300.00186 * 1 2 3 27 27 H 1.08994 * 109.47406 * 60.00406 * 1 2 3 28 28 H 1.08999 * 109.47437 * 59.99254 * 3 2 1 29 29 H 1.09004 * 109.46710 * 300.00121 * 3 2 1 30 30 H 1.09004 * 109.46877 * 304.99325 * 4 3 2 31 31 H 1.08992 * 109.47216 * 185.00021 * 4 3 2 32 32 H 0.97003 * 120.00392 * 180.02562 * 9 8 6 33 33 H 0.96698 * 113.99647 * 60.00356 * 18 16 14 34 34 H 1.08004 * 119.99651 * 359.97438 * 20 19 16 35 35 H 1.08002 * 120.00355 * 180.23115 * 21 20 19 36 36 H 1.08000 * 120.00225 * 179.83348 * 22 21 20 37 37 H 1.08000 * 119.99781 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.00602 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.2007 -0.7869 -1.3061 7 1 3.8686 -1.3561 -2.1617 8 6 4.8559 -1.4240 -0.2595 9 7 5.5165 -0.7170 0.6296 10 14 4.7978 -3.2856 -0.1164 11 1 5.9391 -3.8752 -0.8614 12 1 4.8861 -3.6751 1.3138 13 1 3.5220 -3.7864 -0.6881 14 6 4.1595 1.3223 -2.3518 15 8 4.0572 2.5289 -2.2809 16 6 4.4984 0.6711 -3.6680 17 1 3.7806 -0.1223 -3.8762 18 8 4.4452 1.6473 -4.7102 19 6 5.8859 0.0871 -3.5971 20 6 6.9895 0.9154 -3.6810 21 6 8.2621 0.3803 -3.6119 22 6 8.4313 -0.9841 -3.4672 23 6 7.3277 -1.8129 -3.3885 24 6 6.0550 -1.2773 -3.4537 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6885 1.8465 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5685 0.8410 31 1 3.9783 2.1766 0.0889 32 1 5.9743 -1.1618 1.3601 33 1 5.0593 2.3846 -4.5902 34 1 6.8573 1.9809 -3.7978 35 1 9.1243 1.0277 -3.6737 36 1 9.4256 -1.4025 -3.4159 37 1 7.4599 -2.8788 -3.2759 38 1 5.1929 -1.9248 -3.3921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316576903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -93.633242 kcal Electronic energy + Delta-G solvation = -23000.119699 eV Core-core repulsion = 19615.296542 eV Total energy + Delta-G solvation = -3384.823157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.57468 -38.04872 -37.04123 -35.73082 -34.56291 -31.62450 -31.16398 -30.25763 -29.18583 -26.29222 -25.72289 -24.56208 -22.15529 -21.97475 -20.89914 -19.20797 -17.69254 -16.91239 -16.32974 -15.63411 -15.39252 -15.29335 -14.75954 -14.55755 -14.33016 -14.11075 -13.81534 -13.48558 -12.90595 -12.84827 -12.62478 -12.08491 -11.97884 -11.78747 -11.32311 -11.23599 -11.10846 -11.01162 -10.98064 -10.71554 -10.42065 -10.38486 -10.06980 -9.97214 -9.10635 -8.99495 -8.64494 -8.25914 -7.91396 -7.44042 -6.32907 -4.05062 1.94505 2.05935 3.12376 3.23250 3.26906 3.75878 4.12875 4.38666 4.47101 4.65012 5.05892 5.15912 5.37138 5.42544 5.54033 5.63793 5.66331 5.70438 5.89134 5.95608 5.97310 6.03825 6.10989 6.20948 6.28795 6.34366 6.53980 6.64081 6.69250 7.01545 7.07999 7.23316 7.25030 7.43704 7.60388 7.79609 7.99220 8.07522 8.33445 9.08808 9.43641 9.86808 10.70848 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.008980 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.089031 B = 3117.422368 C = 4295.471144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.117 3.883 5 N -0.418 5.418 6 C -0.323 4.323 7 H 0.084 0.916 8 C 0.058 3.942 9 N -0.861 5.861 10 Si 0.903 3.097 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.449 3.551 15 O -0.603 6.603 16 C 0.146 3.854 17 H 0.118 0.882 18 O -0.547 6.547 19 C -0.081 4.081 20 C -0.109 4.109 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.065 4.065 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.268 0.732 33 H 0.375 0.625 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -1.485 -3.646 3.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.007 4.007 5 N -0.136 5.136 6 C -0.451 4.451 7 H 0.102 0.898 8 C -0.148 4.148 9 N -0.497 5.497 10 Si 0.729 3.271 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.237 3.763 15 O -0.490 6.490 16 C 0.084 3.916 17 H 0.135 0.865 18 O -0.352 6.352 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.083 4.083 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.223 0.777 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.550 -1.505 -3.632 3.969 hybrid contribution 0.157 -0.455 0.756 0.896 sum -0.393 -1.959 -2.876 3.502 Atomic orbital electron populations 1.22648 0.83373 1.01757 0.98870 1.88127 1.17422 1.27718 1.95048 1.23056 0.96566 0.84324 0.98659 1.21415 0.88950 0.99114 0.91208 1.43234 1.55745 1.07376 1.07265 1.19199 1.36464 0.81953 1.07465 0.89832 1.25202 0.93809 0.99341 0.96454 1.69850 1.29124 1.36159 1.14559 0.86313 0.78911 0.83859 0.77971 1.20040 1.20841 1.19175 1.20977 0.80960 0.87034 0.87311 1.90526 1.57923 1.14414 1.86132 1.20455 0.94191 0.90249 0.86661 0.86484 1.86502 1.66056 1.36736 1.45879 1.19983 0.94476 0.94175 0.99528 1.20751 0.92473 0.98986 1.00531 1.20866 0.96527 0.95128 1.02062 1.20962 0.98164 0.93808 1.01227 1.20992 0.92810 0.99295 1.01353 1.20928 0.97078 0.94310 0.95989 0.90393 0.95158 0.94958 0.94222 0.94197 0.87051 0.91232 0.92164 0.77673 0.86971 0.86911 0.87059 0.86844 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.65 10.43 -35.23 -0.37 -8.02 16 3 C 0.05 1.07 6.24 37.16 0.23 1.30 16 4 C 0.12 2.76 5.31 -4.05 -0.02 2.74 16 5 N -0.42 -10.26 2.46 -114.82 -0.28 -10.54 16 6 C -0.32 -7.83 6.13 -14.93 -0.09 -7.92 16 7 H 0.08 1.95 5.37 -52.49 -0.28 1.67 16 8 C 0.06 1.43 5.03 -17.47 -0.09 1.34 16 9 N -0.86 -22.36 11.47 55.50 0.64 -21.72 16 10 Si 0.90 19.36 29.58 -169.99 -5.03 14.33 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.45 10.83 6.94 -10.98 -0.08 10.76 16 15 O -0.60 -15.68 15.94 -14.21 -0.23 -15.91 16 16 C 0.15 3.05 2.94 -29.03 -0.09 2.97 16 17 H 0.12 2.37 7.23 -51.93 -0.38 1.99 16 18 O -0.55 -10.79 12.91 -54.98 -0.71 -11.50 16 19 C -0.08 -1.61 4.42 -104.62 -0.46 -2.07 16 20 C -0.11 -2.03 9.27 -39.59 -0.37 -2.40 16 21 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 22 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.06 -1.24 7.86 -39.58 -0.31 -1.55 16 25 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 2.82 5.70 -51.93 -0.30 2.52 16 31 H 0.07 1.68 7.51 -51.93 -0.39 1.29 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.37 6.61 7.31 45.56 0.33 6.94 16 34 H 0.11 1.94 6.94 -52.48 -0.36 1.58 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.27 6.49 -52.49 -0.34 1.93 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -29.67 319.15 -6.75 -36.42 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -4.23 Total: 12.98 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.35 Total: -0.85 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.35 Total: -32.26 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.30 Total: -35.42 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.67 -6.75 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316576903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.212 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds