Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99896 * 2 1 4 4 C 1.52997 * 109.47513 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47404 * 64.99179 * 4 3 2 6 6 C 1.37100 * 120.00784 * 264.75430 * 5 4 3 7 7 H 1.07993 * 120.00101 * 138.05138 * 6 5 4 8 8 C 1.38950 * 119.99417 * 318.05623 * 6 5 4 9 9 N 1.31409 * 120.00195 * 344.92382 * 8 6 5 10 10 Si 1.86801 * 119.99836 * 164.92593 * 8 6 5 11 11 H 1.48505 * 109.47032 * 89.99619 * 10 8 6 12 12 H 1.48494 * 109.47030 * 209.99621 * 10 8 6 13 13 H 1.48496 * 109.47283 * 330.00061 * 10 8 6 14 14 C 1.34779 * 119.99529 * 84.75348 * 5 4 3 15 15 O 1.21297 * 120.00401 * 5.46490 * 14 5 4 16 16 C 1.50709 * 120.00036 * 185.19230 * 14 5 4 17 17 H 1.08999 * 109.46660 * 51.35223 * 16 14 5 18 18 O 1.42902 * 109.47130 * 171.35344 * 16 14 5 19 19 C 1.50700 * 109.47067 * 291.35635 * 16 14 5 20 20 C 1.38237 * 120.00009 * 283.67502 * 19 16 14 21 21 C 1.38228 * 120.00213 * 179.81047 * 20 19 16 22 22 C 1.38238 * 119.99746 * 0.39680 * 21 20 19 23 23 C 1.38234 * 119.99983 * 359.85583 * 22 21 20 24 24 C 1.38234 * 119.99807 * 103.94660 * 19 16 14 25 25 H 1.09008 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47293 * 300.00186 * 1 2 3 27 27 H 1.08994 * 109.47406 * 60.00406 * 1 2 3 28 28 H 1.08999 * 109.47437 * 59.99254 * 3 2 1 29 29 H 1.09004 * 109.46710 * 300.00121 * 3 2 1 30 30 H 1.09004 * 109.46877 * 304.99325 * 4 3 2 31 31 H 1.08992 * 109.47216 * 185.00021 * 4 3 2 32 32 H 0.97003 * 120.00392 * 180.02562 * 9 8 6 33 33 H 0.96698 * 113.99647 * 60.00356 * 18 16 14 34 34 H 1.08004 * 119.99651 * 359.97438 * 20 19 16 35 35 H 1.08002 * 120.00355 * 180.23115 * 21 20 19 36 36 H 1.08000 * 120.00225 * 179.83348 * 22 21 20 37 37 H 1.08000 * 119.99781 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.00602 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.2007 -0.7869 -1.3061 7 1 3.8686 -1.3561 -2.1617 8 6 4.8559 -1.4240 -0.2595 9 7 5.5165 -0.7170 0.6296 10 14 4.7978 -3.2856 -0.1164 11 1 5.9391 -3.8752 -0.8614 12 1 4.8861 -3.6751 1.3138 13 1 3.5220 -3.7864 -0.6881 14 6 4.1595 1.3223 -2.3518 15 8 4.0572 2.5289 -2.2809 16 6 4.4984 0.6711 -3.6680 17 1 3.7806 -0.1223 -3.8762 18 8 4.4452 1.6473 -4.7102 19 6 5.8859 0.0871 -3.5971 20 6 6.9895 0.9154 -3.6810 21 6 8.2621 0.3803 -3.6119 22 6 8.4313 -0.9841 -3.4672 23 6 7.3277 -1.8129 -3.3885 24 6 6.0550 -1.2773 -3.4537 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6885 1.8465 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5685 0.8410 31 1 3.9783 2.1766 0.0889 32 1 5.9743 -1.1618 1.3601 33 1 5.0593 2.3846 -4.5902 34 1 6.8573 1.9809 -3.7978 35 1 9.1243 1.0277 -3.6737 36 1 9.4256 -1.4025 -3.4159 37 1 7.4599 -2.8788 -3.2759 38 1 5.1929 -1.9248 -3.3921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316576903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -112.413212 kcal Electronic energy + Delta-G solvation = -23000.934059 eV Core-core repulsion = 19615.296542 eV Total energy + Delta-G solvation = -3385.637517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24493 -39.61037 -38.61504 -37.35930 -36.41102 -33.50473 -32.66615 -31.63112 -30.83596 -27.83677 -27.26517 -26.30340 -23.82547 -23.36276 -22.41560 -21.03393 -19.44381 -18.41081 -18.06196 -17.24955 -16.98976 -16.87263 -16.34625 -16.20735 -15.89865 -15.69851 -15.36953 -15.02276 -14.58309 -14.34935 -14.10916 -13.64350 -13.58011 -13.34565 -13.00697 -12.84006 -12.81218 -12.62736 -12.51054 -12.35588 -12.11002 -11.86603 -11.74594 -11.54533 -10.90268 -10.56118 -10.34844 -9.64494 -9.52963 -9.25920 -8.20080 -5.96518 0.54264 0.68001 1.42824 1.50621 1.59195 1.93319 2.35779 2.81777 2.99406 3.00823 3.23640 3.58666 3.88734 4.04084 4.16284 4.23963 4.24818 4.34152 4.45803 4.47811 4.52573 4.59013 4.61596 4.75239 4.77892 4.85639 4.89080 5.17120 5.27144 5.34239 5.53440 5.66148 5.72857 5.81221 6.05045 6.24994 6.38887 6.42719 6.57148 7.19855 7.56164 7.99167 8.84347 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.008980 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.089031 B = 3117.422368 C = 4295.471144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.064 3.936 4 C 0.115 3.885 5 N -0.426 5.426 6 C -0.323 4.323 7 H 0.090 0.910 8 C 0.024 3.976 9 N -0.893 5.893 10 Si 0.955 3.045 11 H -0.260 1.260 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.437 3.563 15 O -0.631 6.631 16 C 0.156 3.844 17 H 0.120 0.880 18 O -0.548 6.548 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.081 4.081 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.383 0.617 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -2.829 -3.996 4.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.009 4.009 5 N -0.143 5.143 6 C -0.450 4.450 7 H 0.108 0.892 8 C -0.179 4.179 9 N -0.530 5.530 10 Si 0.779 3.221 11 H -0.185 1.185 12 H -0.215 1.215 13 H -0.187 1.187 14 C 0.226 3.774 15 O -0.520 6.520 16 C 0.094 3.906 17 H 0.137 0.863 18 O -0.354 6.354 19 C -0.102 4.102 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.152 4.152 24 C -0.099 4.099 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.134 -2.855 -3.998 4.915 hybrid contribution 0.028 0.000 0.858 0.858 sum -0.106 -2.855 -3.140 4.245 Atomic orbital electron populations 1.22892 0.80603 1.03417 1.00224 1.88057 1.20475 1.27615 1.95304 1.22813 0.94443 0.84698 0.99380 1.21352 0.91229 0.97737 0.90592 1.43439 1.55592 1.07733 1.07531 1.19388 1.36108 0.81846 1.07669 0.89230 1.25829 0.93335 1.02722 0.95991 1.69963 1.30256 1.37612 1.15214 0.85513 0.79470 0.79600 0.77534 1.18494 1.21546 1.18716 1.21604 0.80462 0.86871 0.88420 1.90487 1.59149 1.15573 1.86830 1.20319 0.95263 0.90113 0.84933 0.86278 1.86469 1.66519 1.37063 1.45399 1.19970 0.93999 0.94865 1.01370 1.20979 0.93159 0.99297 1.01014 1.21248 0.96678 0.95997 1.00886 1.21393 0.99481 0.93598 0.99511 1.21320 0.92473 1.00654 1.00787 1.21050 0.98052 0.94065 0.96714 0.88655 0.93018 0.94305 0.91533 0.95245 0.88761 0.92780 0.92341 0.76738 0.86621 0.84093 0.83761 0.84798 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.27 10.43 -148.98 -1.55 -17.82 16 3 C 0.06 2.65 6.24 71.98 0.45 3.10 16 4 C 0.11 5.54 5.31 86.38 0.46 6.00 16 5 N -0.43 -21.15 2.46 -635.55 -1.56 -22.71 16 6 C -0.32 -15.60 6.13 84.04 0.52 -15.09 16 7 H 0.09 4.16 5.37 -2.91 -0.02 4.14 16 8 C 0.02 1.18 5.03 84.93 0.43 1.61 16 9 N -0.89 -46.68 11.47 21.66 0.25 -46.43 16 10 Si 0.95 38.77 29.58 68.60 2.03 40.80 16 11 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 12 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 14 C 0.44 21.44 6.94 87.66 0.61 22.05 16 15 O -0.63 -33.58 15.94 15.80 0.25 -33.33 16 16 C 0.16 6.53 2.94 29.10 0.09 6.62 16 17 H 0.12 4.85 7.23 -2.39 -0.02 4.83 16 18 O -0.55 -21.68 12.91 -130.10 -1.68 -23.36 16 19 C -0.10 -3.98 4.42 -19.87 -0.09 -4.07 16 20 C -0.13 -4.60 9.27 22.27 0.21 -4.40 16 21 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 22 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 23 C -0.13 -4.42 10.05 22.27 0.22 -4.19 16 24 C -0.08 -3.00 7.86 22.27 0.18 -2.82 16 25 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 4.89 5.70 -2.38 -0.01 4.87 16 31 H 0.05 2.70 7.51 -2.39 -0.02 2.69 16 32 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 33 H 0.38 13.60 7.31 -74.06 -0.54 13.06 16 34 H 0.12 3.99 6.94 -2.91 -0.02 3.97 16 35 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 37 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.12 4.43 6.49 -2.91 -0.02 4.41 16 Total: -1.00 -63.08 319.15 3.03 -60.05 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.54 Total: 39.35 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.76 Total: 3.45 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.31 Total: -69.14 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: -2.98 Total: -74.52 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -63.08 3.03 -60.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316576903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.364 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds