Wall clock time and date at job start Wed Apr 15 2020 11:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34902 * 116.99502 * 2 1 4 4 O 1.21619 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.46470 * 119.99329 * 179.97438 * 3 2 1 6 6 C 1.36642 * 125.99055 * 179.97438 * 5 3 2 7 7 C 1.40307 * 106.70418 * 180.02562 * 6 5 3 8 8 C 1.35172 * 107.12236 * 0.02562 * 7 6 5 9 9 C 1.50708 * 125.60957 * 179.97438 * 8 7 6 10 10 N 1.46890 * 109.47101 * 89.99570 * 9 8 7 11 11 C 1.46907 * 111.00178 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47391 * 185.35445 * 11 10 9 13 13 C 1.50708 * 115.54865 * 65.04863 * 12 11 10 14 14 H 1.07998 * 119.99540 * 265.44173 * 13 12 11 15 15 C 1.37880 * 119.99865 * 85.44900 * 13 12 11 16 16 N 1.31513 * 120.00017 * 353.59055 * 15 13 12 17 17 Si 1.86796 * 119.99505 * 173.59506 * 15 13 12 18 18 H 1.48494 * 109.47677 * 359.97438 * 17 15 13 19 19 H 1.48509 * 109.47043 * 120.00059 * 17 15 13 20 20 H 1.48503 * 109.47048 * 239.99286 * 17 15 13 21 21 C 1.52996 * 117.49969 * 279.37811 * 12 11 10 22 22 C 1.52997 * 117.49938 * 210.71588 * 12 11 10 23 23 O 1.33913 * 108.78258 * 0.26063 * 8 7 6 24 24 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47705 * 300.00163 * 1 2 3 26 26 H 1.09008 * 109.47202 * 60.00317 * 1 2 3 27 27 H 1.07999 * 126.65017 * 0.02562 * 6 5 3 28 28 H 1.07993 * 126.44045 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.46674 * 330.00100 * 9 8 7 30 30 H 1.08993 * 109.47309 * 210.00288 * 9 8 7 31 31 H 1.00902 * 111.00986 * 303.95657 * 10 9 8 32 32 H 1.09005 * 109.46369 * 305.35273 * 11 10 9 33 33 H 1.08996 * 109.46993 * 65.35429 * 11 10 9 34 34 H 0.96994 * 119.99624 * 180.02562 * 16 15 13 35 35 H 1.09004 * 117.50152 * 0.02562 * 21 12 11 36 36 H 1.09001 * 117.49969 * 145.01953 * 21 12 11 37 37 H 1.08998 * 117.50043 * 214.98026 * 22 12 11 38 38 H 1.08999 * 117.49947 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5271 1.2787 0.0006 6 6 4.2711 2.4247 0.0001 7 6 5.6179 2.0312 0.0004 8 6 5.6375 0.6796 0.0003 9 6 6.8755 -0.1799 0.0000 10 7 7.2781 -0.4591 1.3848 11 6 8.4847 -1.2962 1.4237 12 6 8.7957 -1.6757 2.8728 13 6 7.7722 -2.5508 3.5495 14 1 6.9932 -2.1050 4.1501 15 6 7.8306 -3.9204 3.4020 16 7 8.6991 -4.4560 2.5722 17 14 6.6760 -5.0152 4.3807 18 1 5.8025 -4.1733 5.2369 19 1 5.8376 -5.8099 3.4474 20 1 7.4705 -5.9330 5.2360 21 6 9.5197 -0.6394 3.7346 22 6 10.2639 -1.8857 3.2486 23 8 4.3762 0.2301 -0.0057 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 3.8954 3.4373 -0.0003 28 1 6.4773 2.6852 0.0005 29 1 7.6814 0.3440 -0.5141 30 1 6.6662 -1.1181 -0.5138 31 1 7.4155 0.3968 1.9011 32 1 8.3181 -2.2009 0.8389 33 1 9.3248 -0.7423 1.0048 34 1 8.7398 -5.4195 2.4682 35 1 9.7742 0.3129 3.2693 36 1 9.2561 -0.5908 4.7911 37 1 10.4895 -2.6565 3.9855 38 1 11.0082 -1.7539 2.4632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430775070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:03 Heat of formation + Delta-G solvation = -37.778985 kcal Electronic energy + Delta-G solvation = -21083.884692 eV Core-core repulsion = 17701.483557 eV Total energy + Delta-G solvation = -3382.401134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.73392 -40.27994 -37.16265 -36.67107 -34.81677 -33.07920 -31.83779 -30.67494 -28.25038 -26.53910 -25.35743 -23.64196 -22.61434 -21.51198 -21.02785 -20.42838 -19.05570 -18.50755 -17.18208 -16.85623 -16.49664 -15.85980 -15.46738 -14.67877 -14.40437 -14.07283 -13.91306 -13.84380 -13.37289 -13.24185 -13.13539 -12.98569 -12.73679 -12.34103 -11.62643 -11.50353 -11.24391 -11.01723 -11.01339 -10.92799 -10.67961 -10.43429 -10.18759 -10.10290 -9.51102 -8.83116 -8.68775 -8.38123 -8.07715 -7.73307 -5.95744 -3.96908 0.77382 2.16982 2.24839 2.80676 2.94825 3.34814 3.43097 3.48360 4.46029 4.49822 4.74842 4.79972 4.90448 4.94219 4.99298 5.30976 5.32782 5.36198 5.42335 5.49622 5.57494 5.74383 5.84940 6.05705 6.11255 6.25990 6.27411 6.43822 6.54821 6.71213 6.79766 6.87845 7.10365 7.44762 7.49134 7.51311 7.77455 7.96903 7.99547 8.54283 9.02886 9.66835 11.14225 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.004324 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.780117 B = 6474.356980 C = 7726.532368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.557 3.443 4 O -0.496 6.496 5 C -0.081 4.081 6 C -0.097 4.097 7 C -0.232 4.232 8 C 0.069 3.931 9 C 0.125 3.875 10 N -0.664 5.664 11 C 0.107 3.893 12 C 0.051 3.949 13 C -0.470 4.470 14 H 0.060 0.940 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.216 4.216 22 C -0.156 4.156 23 O -0.136 6.136 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.336 0.664 32 H 0.081 0.919 33 H 0.000 1.000 34 H 0.257 0.743 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 10.765 -7.534 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.403 3.597 4 O -0.386 6.386 5 C -0.131 4.131 6 C -0.117 4.117 7 C -0.252 4.252 8 C 0.014 3.986 9 C -0.004 4.004 10 N -0.295 5.295 11 C -0.021 4.021 12 C 0.050 3.950 13 C -0.508 4.508 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.253 4.253 22 C -0.195 4.195 23 O -0.030 6.030 24 H 0.123 0.877 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.179 0.821 28 H 0.177 0.823 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.919 9.996 -7.544 15.375 hybrid contribution -0.033 0.162 0.254 0.303 sum -8.952 10.158 -7.290 15.378 Atomic orbital electron populations 1.23351 0.75525 1.04158 1.02663 1.86716 1.23839 1.31725 1.83853 1.19206 0.85615 0.82031 0.72873 1.90920 1.64537 1.35944 1.47184 1.20571 0.87869 0.86471 1.18214 1.21904 0.92410 0.98524 0.98877 1.21604 0.97600 0.94369 1.11611 1.23126 0.84028 0.93736 0.97680 1.20555 0.87997 0.98140 0.93673 1.60293 1.38957 1.21552 1.08704 1.21616 0.86266 0.95134 0.99035 1.18799 0.91395 0.94997 0.89780 1.20351 1.11375 0.89839 1.29191 0.92190 1.24928 0.95417 0.98003 0.95063 1.70007 1.36114 1.10928 1.35352 0.86607 0.80962 0.80672 0.80183 1.19778 1.21168 1.21265 1.23006 1.09617 0.92493 1.00180 1.22522 0.96604 0.97948 1.02382 1.84169 1.15395 1.34262 1.69198 0.87660 0.91559 0.91687 0.82053 0.82344 0.92141 0.88756 0.84661 0.90108 0.98196 0.93355 0.92147 0.90462 0.89993 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.74 10.58 -42.49 -0.45 -5.19 16 3 C 0.56 8.15 7.93 34.05 0.27 8.42 16 4 O -0.50 -7.60 16.66 -19.36 -0.32 -7.92 16 5 C -0.08 -1.20 7.18 -36.84 -0.26 -1.47 16 6 C -0.10 -1.24 10.62 -39.38 -0.42 -1.66 16 7 C -0.23 -2.86 10.77 -39.90 -0.43 -3.29 16 8 C 0.07 1.00 6.83 -35.40 -0.24 0.76 16 9 C 0.13 1.86 6.20 -4.98 -0.03 1.82 16 10 N -0.66 -12.20 6.37 -115.06 -0.73 -12.94 16 11 C 0.11 2.24 5.51 -3.82 -0.02 2.22 16 12 C 0.05 1.20 1.55 -155.66 -0.24 0.96 16 13 C -0.47 -12.64 8.74 -34.44 -0.30 -12.94 16 14 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 15 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 16 N -0.89 -24.78 12.92 55.43 0.72 -24.07 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.22 -4.51 9.96 -26.69 -0.27 -4.78 16 22 C -0.16 -3.56 9.41 -26.69 -0.25 -3.81 16 23 O -0.14 -2.24 10.67 4.76 0.05 -2.19 16 24 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.34 5.74 8.78 -39.29 -0.34 5.39 16 32 H 0.08 1.89 8.13 -51.93 -0.42 1.47 16 33 H 0.00 0.00 8.09 -51.93 -0.42 -0.42 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -30.40 339.22 -7.25 -37.65 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.38 Total: 3.71 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.22 Total: -10.61 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.02 Total: -37.00 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.72 Total: -15.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.40 -7.25 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430775070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.125 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds