Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34902 * 116.99502 * 2 1 4 4 O 1.21619 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.46470 * 119.99329 * 179.97438 * 3 2 1 6 6 C 1.36642 * 125.99055 * 179.97438 * 5 3 2 7 7 C 1.40307 * 106.70418 * 180.02562 * 6 5 3 8 8 C 1.35172 * 107.12236 * 0.02562 * 7 6 5 9 9 C 1.50708 * 125.60957 * 179.97438 * 8 7 6 10 10 N 1.46890 * 109.47101 * 89.99570 * 9 8 7 11 11 C 1.46907 * 111.00178 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47391 * 185.35445 * 11 10 9 13 13 C 1.50708 * 115.54865 * 65.04863 * 12 11 10 14 14 H 1.07998 * 119.99540 * 265.44173 * 13 12 11 15 15 C 1.37880 * 119.99865 * 85.44900 * 13 12 11 16 16 N 1.31513 * 120.00017 * 353.59055 * 15 13 12 17 17 Si 1.86796 * 119.99505 * 173.59506 * 15 13 12 18 18 H 1.48494 * 109.47677 * 359.97438 * 17 15 13 19 19 H 1.48509 * 109.47043 * 120.00059 * 17 15 13 20 20 H 1.48503 * 109.47048 * 239.99286 * 17 15 13 21 21 C 1.52996 * 117.49969 * 279.37811 * 12 11 10 22 22 C 1.52997 * 117.49938 * 210.71588 * 12 11 10 23 23 O 1.33913 * 108.78258 * 0.26063 * 8 7 6 24 24 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47705 * 300.00163 * 1 2 3 26 26 H 1.09008 * 109.47202 * 60.00317 * 1 2 3 27 27 H 1.07999 * 126.65017 * 0.02562 * 6 5 3 28 28 H 1.07993 * 126.44045 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.46674 * 330.00100 * 9 8 7 30 30 H 1.08993 * 109.47309 * 210.00288 * 9 8 7 31 31 H 1.00902 * 111.00986 * 303.95657 * 10 9 8 32 32 H 1.09005 * 109.46369 * 305.35273 * 11 10 9 33 33 H 1.08996 * 109.46993 * 65.35429 * 11 10 9 34 34 H 0.96994 * 119.99624 * 180.02562 * 16 15 13 35 35 H 1.09004 * 117.50152 * 0.02562 * 21 12 11 36 36 H 1.09001 * 117.49969 * 145.01953 * 21 12 11 37 37 H 1.08998 * 117.50043 * 214.98026 * 22 12 11 38 38 H 1.08999 * 117.49947 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5271 1.2787 0.0006 6 6 4.2711 2.4247 0.0001 7 6 5.6179 2.0312 0.0004 8 6 5.6375 0.6796 0.0003 9 6 6.8755 -0.1799 0.0000 10 7 7.2781 -0.4591 1.3848 11 6 8.4847 -1.2962 1.4237 12 6 8.7957 -1.6757 2.8728 13 6 7.7722 -2.5508 3.5495 14 1 6.9932 -2.1050 4.1501 15 6 7.8306 -3.9204 3.4020 16 7 8.6991 -4.4560 2.5722 17 14 6.6760 -5.0152 4.3807 18 1 5.8025 -4.1733 5.2369 19 1 5.8376 -5.8099 3.4474 20 1 7.4705 -5.9330 5.2360 21 6 9.5197 -0.6394 3.7346 22 6 10.2639 -1.8857 3.2486 23 8 4.3762 0.2301 -0.0057 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 3.8954 3.4373 -0.0003 28 1 6.4773 2.6852 0.0005 29 1 7.6814 0.3440 -0.5141 30 1 6.6662 -1.1181 -0.5138 31 1 7.4155 0.3968 1.9011 32 1 8.3181 -2.2009 0.8389 33 1 9.3248 -0.7423 1.0048 34 1 8.7398 -5.4195 2.4682 35 1 9.7742 0.3129 3.2693 36 1 9.2561 -0.5908 4.7911 37 1 10.4895 -2.6565 3.9855 38 1 11.0082 -1.7539 2.4632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430775070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = -56.369326 kcal Electronic energy + Delta-G solvation = -21084.690830 eV Core-core repulsion = 17701.483557 eV Total energy + Delta-G solvation = -3383.207272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.80903 -41.32997 -38.83472 -37.71829 -36.25421 -34.15419 -33.87679 -31.83587 -29.23793 -27.87354 -27.17032 -25.05526 -23.71020 -22.83563 -22.53008 -21.50334 -20.87357 -19.56604 -18.30038 -18.09480 -17.91819 -17.08513 -16.89780 -16.48991 -15.82314 -15.44519 -15.25170 -15.10368 -14.64129 -14.33065 -14.26521 -14.19217 -13.99357 -13.43428 -13.15385 -13.11100 -12.88799 -12.62442 -12.56252 -12.33828 -12.09263 -11.97105 -11.94008 -11.34278 -11.11507 -10.72074 -10.35980 -9.95044 -9.72549 -9.11428 -8.03318 -6.08106 -0.31209 1.13859 1.26527 1.40201 1.44034 1.53578 1.75360 1.94620 2.48393 3.26498 3.28597 3.54720 3.72712 3.84512 3.86090 4.20728 4.26061 4.28994 4.41960 4.44454 4.50735 4.62992 4.64618 4.75344 4.77706 4.81062 4.86207 5.03735 5.06136 5.08601 5.32388 5.33788 5.68932 5.76980 5.82052 5.90354 6.25743 6.46214 6.50384 6.69520 6.95234 7.57135 9.05639 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.004324 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.780117 B = 6474.356980 C = 7726.532368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.556 3.444 4 O -0.509 6.509 5 C -0.106 4.106 6 C -0.088 4.088 7 C -0.211 4.211 8 C 0.047 3.953 9 C 0.131 3.869 10 N -0.683 5.683 11 C 0.124 3.876 12 C 0.022 3.978 13 C -0.479 4.479 14 H 0.043 0.957 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.282 1.282 21 C -0.187 4.187 22 C -0.164 4.164 23 O -0.166 6.166 24 H 0.130 0.870 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.186 0.814 28 H 0.193 0.807 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.345 0.655 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 12.616 -7.872 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.403 3.597 4 O -0.401 6.401 5 C -0.156 4.156 6 C -0.107 4.107 7 C -0.230 4.230 8 C -0.007 4.007 9 C 0.002 3.998 10 N -0.315 5.315 11 C -0.005 4.005 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.061 0.939 15 C -0.175 4.175 16 N -0.548 5.548 17 Si 0.764 3.236 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.208 1.208 21 C -0.225 4.225 22 C -0.202 4.202 23 O -0.061 6.061 24 H 0.148 0.852 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.203 0.797 28 H 0.210 0.790 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.855 11.853 -7.876 16.760 hybrid contribution -0.112 -0.383 0.366 0.541 sum -8.966 11.470 -7.509 16.381 Atomic orbital electron populations 1.23697 0.73308 1.06117 1.03353 1.86700 1.26193 1.31489 1.83551 1.19275 0.85761 0.82126 0.72576 1.90896 1.64835 1.36227 1.48127 1.20919 0.88140 0.87005 1.19564 1.22291 0.92406 0.98945 0.97055 1.21975 0.98401 0.93560 1.09047 1.23236 0.83393 0.94712 0.99337 1.20532 0.89168 0.98241 0.91835 1.60090 1.38012 1.22114 1.11312 1.21221 0.88070 0.94628 0.96574 1.18918 0.90882 0.96393 0.91680 1.20571 1.11640 0.90617 1.28939 0.93904 1.25497 0.96779 0.99182 0.95994 1.70084 1.37383 1.10922 1.36445 0.85830 0.79453 0.79223 0.79045 1.19848 1.21216 1.20782 1.22993 1.06783 0.93020 0.99656 1.22441 0.96717 0.98588 1.02465 1.84127 1.16364 1.35483 1.70134 0.85157 0.91170 0.90722 0.79716 0.78984 0.88634 0.90247 0.83645 0.93505 0.95729 0.93517 0.88655 0.91023 0.92747 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -9.95 10.58 -56.78 -0.60 -10.55 16 3 C 0.56 16.13 7.93 69.97 0.55 16.69 16 4 O -0.51 -15.28 16.66 19.45 0.32 -14.95 16 5 C -0.11 -3.10 7.18 24.04 0.17 -2.93 16 6 C -0.09 -2.03 10.62 22.40 0.24 -1.79 16 7 C -0.21 -4.53 10.77 22.07 0.24 -4.30 16 8 C 0.05 1.29 6.83 24.98 0.17 1.46 16 9 C 0.13 3.66 6.20 85.56 0.53 4.19 16 10 N -0.68 -24.16 6.37 -517.93 -3.30 -27.46 16 11 C 0.12 5.02 5.51 86.30 0.48 5.49 16 12 C 0.02 1.02 1.55 -52.93 -0.08 0.94 16 13 C -0.48 -26.03 8.74 25.60 0.22 -25.81 16 14 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 15 C 0.02 1.35 5.39 84.66 0.46 1.81 16 16 N -0.91 -51.62 12.92 21.45 0.28 -51.35 16 17 Si 0.94 44.61 29.54 68.60 2.03 46.64 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C -0.19 -7.44 9.96 30.62 0.30 -7.13 16 22 C -0.16 -7.33 9.41 30.62 0.29 -7.04 16 23 O -0.17 -5.42 10.67 -4.79 -0.05 -5.47 16 24 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.34 10.96 8.78 -89.69 -0.79 10.17 16 32 H 0.05 2.20 8.13 -2.38 -0.02 2.18 16 33 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 34 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.05 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -66.20 339.22 3.73 -62.47 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.28 Total: 17.40 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 4.77 Total: -16.72 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -3.02 Total: -78.81 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.33 Total: -30.98 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.20 3.73 -62.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430775070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.102 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds