Wall clock time and date at job start Wed Apr 15 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 C 1.52995 * 109.47081 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47483 * 63.56366 * 4 3 2 6 6 C 1.37092 * 120.00253 * 266.27064 * 5 4 3 7 7 H 1.07999 * 120.00300 * 142.48852 * 6 5 4 8 8 C 1.38947 * 119.99738 * 322.47855 * 6 5 4 9 9 N 1.31417 * 120.00126 * 160.74308 * 8 6 5 10 10 Si 1.86804 * 120.00192 * 340.73951 * 8 6 5 11 11 H 1.48496 * 109.46918 * 95.24001 * 10 8 6 12 12 H 1.48505 * 109.47080 * 215.23788 * 10 8 6 13 13 H 1.48494 * 109.46847 * 335.23709 * 10 8 6 14 14 C 1.34776 * 119.99575 * 86.26623 * 5 4 3 15 15 O 1.21299 * 120.00246 * 0.02562 * 14 5 4 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 5 4 17 17 C 1.50698 * 109.47420 * 180.02562 * 16 14 5 18 18 C 1.38261 * 119.94682 * 89.99938 * 17 16 14 19 19 C 1.38149 * 120.05703 * 180.02562 * 18 17 16 20 20 C 1.38729 * 119.94224 * 359.97438 * 19 18 17 21 21 O 1.35900 * 120.05131 * 180.02562 * 20 19 18 22 22 C 1.38733 * 119.88929 * 0.27959 * 20 19 18 23 23 C 1.38139 * 119.94102 * 359.46857 * 22 20 19 24 24 H 1.09002 * 109.47063 * 299.99628 * 1 2 3 25 25 H 1.08996 * 109.47297 * 59.99364 * 1 2 3 26 26 H 1.09004 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46648 * 60.00256 * 3 2 1 28 28 H 1.09002 * 109.46979 * 300.00670 * 3 2 1 29 29 H 1.09002 * 109.46924 * 303.56294 * 4 3 2 30 30 H 1.09001 * 109.47201 * 183.56805 * 4 3 2 31 31 H 0.96998 * 120.00321 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47291 * 59.99698 * 16 14 5 33 33 H 1.09005 * 109.46911 * 299.99684 * 16 14 5 34 34 H 1.08000 * 119.97086 * 0.02562 * 18 17 16 35 35 H 1.07996 * 120.02425 * 179.97438 * 19 18 17 36 36 H 0.96699 * 113.99851 * 90.00373 * 21 20 19 37 37 H 1.08000 * 120.02424 * 179.72050 * 22 20 19 38 38 H 1.08004 * 119.97157 * 180.23318 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9732 0.5333 -1.2377 6 6 4.1680 -0.8234 -1.2662 7 1 3.8964 -1.3896 -2.1449 8 6 4.7150 -1.4700 -0.1647 9 7 4.5616 -2.7673 -0.0211 10 14 5.6687 -0.4954 1.1121 11 1 4.7639 -0.1261 2.2301 12 1 6.7867 -1.3227 1.6327 13 1 6.2136 0.7371 0.4883 14 6 4.1844 1.2679 -2.3477 15 8 4.0125 2.4684 -2.3224 16 6 4.6342 0.5980 -3.6204 17 6 4.7971 1.6336 -4.7030 18 6 6.0150 2.2645 -4.8771 19 6 6.1666 3.2146 -5.8684 20 6 5.0957 3.5352 -6.6899 21 8 5.2425 4.4692 -7.6661 22 6 3.8732 2.9046 -6.5097 23 6 3.7282 1.9515 -5.5204 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8531 0.5894 0.8555 30 1 3.9787 2.1784 0.0633 31 1 4.9431 -3.2186 0.7480 32 1 3.8889 -0.1356 -3.9280 33 1 5.5877 0.0978 -3.4503 34 1 6.8485 2.0142 -4.2375 35 1 7.1181 3.7074 -6.0036 36 1 5.5309 4.1082 -8.5156 37 1 3.0367 3.1557 -7.1451 38 1 2.7777 1.4575 -5.3822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457208721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:06 Heat of formation + Delta-G solvation = -83.319451 kcal Electronic energy + Delta-G solvation = -21908.819531 eV Core-core repulsion = 18524.443614 eV Total energy + Delta-G solvation = -3384.375917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.68823 -38.79005 -37.17220 -36.49374 -34.76174 -31.97888 -31.61755 -30.73149 -29.45791 -26.57191 -25.73655 -24.57696 -22.61727 -22.53734 -21.18544 -18.94709 -18.25555 -17.09975 -16.43590 -15.86853 -15.58771 -15.50816 -15.40843 -14.96885 -14.53889 -14.46198 -13.83610 -13.68545 -13.37816 -13.19181 -12.73435 -12.57020 -12.12512 -11.86042 -11.73232 -11.65206 -11.40118 -11.13026 -10.89671 -10.86785 -10.74703 -10.26068 -10.09706 -9.88156 -9.18679 -9.08659 -8.71128 -8.64798 -8.11781 -7.79183 -6.40493 -3.99589 1.49789 1.63523 3.06921 3.22706 3.28258 3.71574 3.84485 4.15829 4.30587 4.39014 4.51834 5.05875 5.11688 5.18698 5.28027 5.59308 5.65479 5.67959 5.73414 5.77737 5.84939 5.94139 5.99540 6.03596 6.07339 6.12727 6.30495 6.32832 6.40434 6.46691 6.58949 6.63452 6.98827 7.07839 7.35675 7.75827 7.79271 8.11711 8.27714 9.00154 9.37908 9.69688 10.70608 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.005139 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.888944 B = 5447.481598 C = 6134.522486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.101 3.899 5 N -0.455 5.455 6 C -0.330 4.330 7 H 0.103 0.897 8 C 0.072 3.928 9 N -0.859 5.859 10 Si 0.874 3.126 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.263 1.263 14 C 0.481 3.519 15 O -0.596 6.596 16 C -0.085 4.085 17 C -0.051 4.051 18 C -0.092 4.092 19 C -0.144 4.144 20 C 0.086 3.914 21 O -0.502 6.502 22 C -0.144 4.144 23 C -0.093 4.093 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.273 0.727 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.383 0.617 37 H 0.122 0.878 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 6.131 -7.673 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.023 4.023 4 C -0.022 4.022 5 N -0.175 5.175 6 C -0.457 4.457 7 H 0.121 0.879 8 C -0.135 4.135 9 N -0.495 5.495 10 Si 0.703 3.297 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.187 1.187 14 C 0.270 3.730 15 O -0.482 6.482 16 C -0.124 4.124 17 C -0.051 4.051 18 C -0.110 4.110 19 C -0.163 4.163 20 C 0.042 3.958 21 O -0.312 6.312 22 C -0.163 4.163 23 C -0.111 4.111 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.237 0.763 37 H 0.140 0.860 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.213 6.742 -7.084 9.855 hybrid contribution 0.290 0.172 0.554 0.648 sum -0.923 6.914 -6.530 9.555 Atomic orbital electron populations 1.22660 0.83036 1.02082 0.98746 1.88212 1.17670 1.26652 1.95021 1.22864 0.94998 0.85170 0.99302 1.21720 0.92238 0.98524 0.89692 1.43650 1.58101 1.07819 1.07961 1.18968 1.42003 0.79799 1.04965 0.87918 1.25240 0.95847 0.95186 0.97248 1.69740 1.41276 1.09002 1.29444 0.86999 0.80058 0.80785 0.81890 1.20223 1.21614 1.18742 1.20215 0.80590 0.86407 0.85759 1.90570 1.57156 1.14784 1.85672 1.20443 1.04423 0.96301 0.91268 1.19684 0.93296 0.96941 0.95213 1.20909 0.97574 0.95587 0.96954 1.21292 0.98521 0.98773 0.97699 1.18402 0.93246 0.91690 0.92491 1.84837 1.90314 1.33771 1.22233 1.21278 0.97267 0.97282 1.00463 1.20888 0.98398 0.97106 0.94702 0.95190 0.94922 0.90068 0.93990 0.93245 0.90775 0.89989 0.91677 0.88735 0.88114 0.85772 0.85931 0.76253 0.85960 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.66 10.30 -35.23 -0.36 -8.03 16 3 C 0.05 1.09 6.27 37.16 0.23 1.33 16 4 C 0.10 2.26 4.42 -4.04 -0.02 2.25 16 5 N -0.46 -10.82 2.15 -114.82 -0.25 -11.07 16 6 C -0.33 -8.43 8.75 -14.94 -0.13 -8.57 16 7 H 0.10 2.73 7.23 -52.49 -0.38 2.35 16 8 C 0.07 1.89 5.34 -17.47 -0.09 1.79 16 9 N -0.86 -23.65 13.96 55.50 0.77 -22.87 16 10 Si 0.87 20.43 24.82 -169.99 -4.22 16.21 16 11 H -0.28 -6.27 6.70 56.52 0.38 -5.89 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.26 -6.15 7.10 56.52 0.40 -5.75 16 14 C 0.48 10.92 7.61 -10.99 -0.08 10.83 16 15 O -0.60 -14.66 15.68 5.54 0.09 -14.57 16 16 C -0.08 -1.61 4.52 -29.04 -0.13 -1.74 16 17 C -0.05 -0.89 4.37 -104.60 -0.46 -1.34 16 18 C -0.09 -1.49 9.69 -39.61 -0.38 -1.87 16 19 C -0.14 -2.12 9.99 -39.43 -0.39 -2.51 16 20 C 0.09 1.24 6.70 -39.22 -0.26 0.98 16 21 O -0.50 -6.24 13.50 -19.42 -0.26 -6.50 16 22 C -0.14 -2.11 9.99 -39.44 -0.39 -2.51 16 23 C -0.09 -1.49 9.69 -39.61 -0.38 -1.87 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.72 3.21 -51.93 -0.17 1.55 16 30 H 0.08 1.76 7.54 -51.93 -0.39 1.37 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.09 1.71 7.61 -51.93 -0.40 1.32 16 33 H 0.10 1.84 8.04 -51.93 -0.42 1.43 16 34 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.38 2.69 9.06 45.56 0.41 3.11 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -31.87 323.61 -5.04 -36.91 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.30 Total: 6.66 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.39 Total: -1.61 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.53 Total: -33.94 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.54 Total: -29.10 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.22 Total: 16.21 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.87 -5.04 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.411 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds