Wall clock time and date at job start Wed Apr 15 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 C 1.52995 * 109.47081 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47483 * 63.56366 * 4 3 2 6 6 C 1.37092 * 120.00253 * 266.27064 * 5 4 3 7 7 H 1.07999 * 120.00300 * 142.48852 * 6 5 4 8 8 C 1.38947 * 119.99738 * 322.47855 * 6 5 4 9 9 N 1.31417 * 120.00126 * 160.74308 * 8 6 5 10 10 Si 1.86804 * 120.00192 * 340.73951 * 8 6 5 11 11 H 1.48496 * 109.46918 * 95.24001 * 10 8 6 12 12 H 1.48505 * 109.47080 * 215.23788 * 10 8 6 13 13 H 1.48494 * 109.46847 * 335.23709 * 10 8 6 14 14 C 1.34776 * 119.99575 * 86.26623 * 5 4 3 15 15 O 1.21299 * 120.00246 * 0.02562 * 14 5 4 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 5 4 17 17 C 1.50698 * 109.47420 * 180.02562 * 16 14 5 18 18 C 1.38261 * 119.94682 * 89.99938 * 17 16 14 19 19 C 1.38149 * 120.05703 * 180.02562 * 18 17 16 20 20 C 1.38729 * 119.94224 * 359.97438 * 19 18 17 21 21 O 1.35900 * 120.05131 * 180.02562 * 20 19 18 22 22 C 1.38733 * 119.88929 * 0.27959 * 20 19 18 23 23 C 1.38139 * 119.94102 * 359.46857 * 22 20 19 24 24 H 1.09002 * 109.47063 * 299.99628 * 1 2 3 25 25 H 1.08996 * 109.47297 * 59.99364 * 1 2 3 26 26 H 1.09004 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46648 * 60.00256 * 3 2 1 28 28 H 1.09002 * 109.46979 * 300.00670 * 3 2 1 29 29 H 1.09002 * 109.46924 * 303.56294 * 4 3 2 30 30 H 1.09001 * 109.47201 * 183.56805 * 4 3 2 31 31 H 0.96998 * 120.00321 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47291 * 59.99698 * 16 14 5 33 33 H 1.09005 * 109.46911 * 299.99684 * 16 14 5 34 34 H 1.08000 * 119.97086 * 0.02562 * 18 17 16 35 35 H 1.07996 * 120.02425 * 179.97438 * 19 18 17 36 36 H 0.96699 * 113.99851 * 90.00373 * 21 20 19 37 37 H 1.08000 * 120.02424 * 179.72050 * 22 20 19 38 38 H 1.08004 * 119.97157 * 180.23318 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9732 0.5333 -1.2377 6 6 4.1680 -0.8234 -1.2662 7 1 3.8964 -1.3896 -2.1449 8 6 4.7150 -1.4700 -0.1647 9 7 4.5616 -2.7673 -0.0211 10 14 5.6687 -0.4954 1.1121 11 1 4.7639 -0.1261 2.2301 12 1 6.7867 -1.3227 1.6327 13 1 6.2136 0.7371 0.4883 14 6 4.1844 1.2679 -2.3477 15 8 4.0125 2.4684 -2.3224 16 6 4.6342 0.5980 -3.6204 17 6 4.7971 1.6336 -4.7030 18 6 6.0150 2.2645 -4.8771 19 6 6.1666 3.2146 -5.8684 20 6 5.0957 3.5352 -6.6899 21 8 5.2425 4.4692 -7.6661 22 6 3.8732 2.9046 -6.5097 23 6 3.7282 1.9515 -5.5204 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8531 0.5894 0.8555 30 1 3.9787 2.1784 0.0633 31 1 4.9431 -3.2186 0.7480 32 1 3.8889 -0.1356 -3.9280 33 1 5.5877 0.0978 -3.4503 34 1 6.8485 2.0142 -4.2375 35 1 7.1181 3.7074 -6.0036 36 1 5.5309 4.1082 -8.5156 37 1 3.0367 3.1557 -7.1451 38 1 2.7777 1.4575 -5.3822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457208721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:05 Heat of formation + Delta-G solvation = -105.728038 kcal Electronic energy + Delta-G solvation = -21909.791240 eV Core-core repulsion = 18524.443614 eV Total energy + Delta-G solvation = -3385.347626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10716 -40.27509 -38.66529 -37.68822 -36.59574 -33.92578 -33.04410 -31.89325 -31.03077 -27.95947 -27.22048 -26.40688 -24.18229 -23.70752 -22.48301 -20.79531 -19.30234 -18.87109 -18.17388 -17.57171 -17.05349 -16.82633 -16.67275 -16.30695 -16.10437 -15.92754 -15.51784 -15.33885 -14.60631 -14.49207 -14.36305 -14.29316 -13.62388 -13.42017 -13.15763 -13.07508 -12.91096 -12.57732 -12.53682 -12.35494 -12.29338 -11.93653 -11.68186 -11.33664 -11.07278 -10.62718 -10.41087 -9.88123 -9.71978 -9.35395 -8.41571 -6.01931 0.31571 0.46157 1.21377 1.33119 1.42573 1.91015 2.23145 2.51125 2.83861 2.91680 3.18438 3.34455 3.92017 3.94659 4.03567 4.12231 4.13837 4.34495 4.36500 4.45952 4.49064 4.53198 4.54457 4.63372 4.75108 4.78923 4.83352 4.83601 5.04769 5.12956 5.38245 5.46661 5.48032 5.73893 5.94685 6.13138 6.28709 6.38049 6.91454 7.03785 7.46726 7.81519 8.72832 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.005139 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.888944 B = 5447.481598 C = 6134.522486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.091 3.909 5 N -0.466 5.466 6 C -0.321 4.321 7 H 0.083 0.917 8 C 0.034 3.966 9 N -0.898 5.898 10 Si 0.923 3.077 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.479 3.521 15 O -0.614 6.614 16 C -0.077 4.077 17 C -0.076 4.076 18 C -0.103 4.103 19 C -0.148 4.148 20 C 0.093 3.907 21 O -0.507 6.507 22 C -0.148 4.148 23 C -0.103 4.103 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.276 0.724 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.409 0.591 37 H 0.145 0.855 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 7.714 -8.223 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.031 4.031 5 N -0.186 5.186 6 C -0.449 4.449 7 H 0.100 0.900 8 C -0.170 4.170 9 N -0.535 5.535 10 Si 0.750 3.250 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.190 1.190 14 C 0.270 3.730 15 O -0.500 6.500 16 C -0.116 4.116 17 C -0.077 4.077 18 C -0.121 4.121 19 C -0.166 4.166 20 C 0.049 3.951 21 O -0.320 6.320 22 C -0.166 4.166 23 C -0.121 4.121 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.268 0.732 37 H 0.163 0.837 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.329 8.332 -7.655 11.392 hybrid contribution 0.271 -0.237 0.587 0.689 sum -1.058 8.094 -7.068 10.798 Atomic orbital electron populations 1.22869 0.80473 1.03197 1.00410 1.88142 1.20624 1.27502 1.95347 1.22787 0.93359 0.85076 1.00510 1.21856 0.94208 0.98337 0.88735 1.43753 1.58736 1.07247 1.08891 1.18801 1.41332 0.80509 1.04214 0.89958 1.25735 0.96523 0.95767 0.98962 1.69811 1.42839 1.10297 1.30569 0.86208 0.79052 0.79437 0.80284 1.19144 1.21335 1.18960 1.20800 0.79531 0.86281 0.86420 1.90541 1.57738 1.15624 1.86096 1.20362 1.04265 0.96742 0.90267 1.19643 0.94575 0.97762 0.95712 1.21052 0.97327 0.96090 0.97672 1.21528 0.99710 0.98332 0.97079 1.18497 0.92977 0.90977 0.92659 1.84770 1.90415 1.33507 1.23302 1.21518 0.98241 0.96677 1.00185 1.21027 0.98277 0.97724 0.95045 0.92682 0.93978 0.89348 0.90715 0.93901 0.91634 0.89439 0.91438 0.88523 0.87994 0.85402 0.83760 0.73215 0.83745 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.71 10.30 -148.98 -1.53 -18.25 16 3 C 0.06 2.34 6.27 71.98 0.45 2.79 16 4 C 0.09 4.02 4.42 86.38 0.38 4.40 16 5 N -0.47 -22.19 2.15 -635.55 -1.37 -23.55 16 6 C -0.32 -16.64 8.75 84.04 0.74 -15.90 16 7 H 0.08 4.52 7.23 -2.91 -0.02 4.50 16 8 C 0.03 1.79 5.34 84.92 0.45 2.24 16 9 N -0.90 -50.12 13.96 21.66 0.30 -49.82 16 10 Si 0.92 42.00 24.82 68.60 1.70 43.70 16 11 H -0.26 -11.53 6.70 99.48 0.67 -10.86 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.02 7.10 99.48 0.71 -11.32 16 14 C 0.48 21.80 7.61 87.66 0.67 22.47 16 15 O -0.61 -29.98 15.68 -3.09 -0.05 -30.03 16 16 C -0.08 -2.95 4.52 29.10 0.13 -2.82 16 17 C -0.08 -2.63 4.37 -19.85 -0.09 -2.72 16 18 C -0.10 -3.25 9.69 22.25 0.22 -3.04 16 19 C -0.15 -4.05 9.99 22.37 0.22 -3.83 16 20 C 0.09 2.47 6.70 22.51 0.15 2.62 16 21 O -0.51 -10.92 13.50 -92.42 -1.25 -12.17 16 22 C -0.15 -4.02 9.99 22.36 0.22 -3.80 16 23 C -0.10 -3.21 9.69 22.25 0.22 -2.99 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 2.97 3.21 -2.39 -0.01 2.97 16 30 H 0.09 3.68 7.54 -2.39 -0.02 3.66 16 31 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.10 3.60 7.61 -2.39 -0.02 3.58 16 33 H 0.10 3.81 8.04 -2.38 -0.02 3.79 16 34 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.41 4.28 9.06 -74.06 -0.67 3.61 16 37 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -67.37 323.61 3.18 -64.18 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.36 Total: 24.44 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.01 Total: 1.49 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.06 Total: -73.37 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -2.83 Total: -60.45 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.70 Total: 43.70 kcal Total: -67.37 3.18 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.544 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds