Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00109 * 2 1 4 4 O 1.20826 * 119.99691 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00144 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47024 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99981 * 82.95492 * 6 5 3 8 8 H 1.08005 * 119.99544 * 166.31524 * 7 6 5 9 9 C 1.38808 * 120.00299 * 346.32236 * 7 6 5 10 10 N 1.31620 * 120.00091 * 8.36436 * 9 7 6 11 11 Si 1.86798 * 120.00294 * 188.36989 * 9 7 6 12 12 H 1.48497 * 109.47490 * 89.99521 * 11 9 7 13 13 H 1.48500 * 109.47287 * 209.99890 * 11 9 7 14 14 H 1.48511 * 109.46955 * 329.99675 * 11 9 7 15 15 C 1.46505 * 119.99881 * 262.95291 * 6 5 3 16 16 C 1.53008 * 109.46727 * 90.00357 * 15 6 5 17 17 H 1.08998 * 109.47382 * 60.00013 * 16 15 6 18 18 O 1.42898 * 109.46837 * 299.99924 * 16 15 6 19 19 C 1.50700 * 109.46679 * 180.02562 * 16 15 6 20 20 C 1.38233 * 120.00016 * 84.72604 * 19 16 15 21 21 C 1.38236 * 119.99666 * 179.78301 * 20 19 16 22 22 C 1.38232 * 120.00185 * 0.44775 * 21 20 19 23 23 C 1.38241 * 119.99868 * 359.80495 * 22 21 20 24 24 C 1.38231 * 119.99906 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47246 * 300.00338 * 1 2 3 26 26 H 1.08998 * 109.47132 * 60.00066 * 1 2 3 27 27 H 1.09007 * 109.47435 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46874 * 59.99357 * 5 3 2 29 29 H 1.09005 * 109.46613 * 299.99532 * 5 3 2 30 30 H 0.97001 * 120.00469 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.46991 * 209.99713 * 15 6 5 32 32 H 1.08997 * 109.47300 * 330.00786 * 15 6 5 33 33 H 0.96703 * 114.00522 * 299.99824 * 18 16 15 34 34 H 1.07993 * 120.00513 * 359.97438 * 20 19 16 35 35 H 1.08000 * 120.00249 * 180.27127 * 21 20 19 36 36 H 1.08000 * 120.00328 * 179.83609 * 22 21 20 37 37 H 1.08000 * 119.99907 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.00014 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.0368 3.3778 1.1757 8 1 4.5455 4.3297 1.2155 9 6 3.4389 2.8621 2.3173 10 7 2.9640 1.6346 2.3143 11 14 3.3081 3.9102 3.8580 12 1 2.0321 4.6693 3.8335 13 1 3.3402 3.0343 5.0568 14 1 4.4484 4.8603 3.9086 15 6 4.3382 3.3377 -1.2606 16 6 3.0892 3.9727 -1.8755 17 1 2.6782 4.7088 -1.1846 18 8 2.1141 2.9588 -2.1270 19 6 3.4558 4.6490 -3.1714 20 6 3.5055 3.9172 -4.3430 21 6 3.8374 4.5385 -5.5324 22 6 4.1286 5.8897 -5.5486 23 6 4.0840 6.6205 -4.3760 24 6 3.7476 6.0001 -3.1874 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9557 0.7808 -0.8908 29 1 3.9564 0.7806 0.8893 30 1 2.5459 1.2742 3.1119 31 1 5.0819 4.1110 -1.0687 32 1 4.7492 2.6017 -1.9515 33 1 2.4122 2.2686 -2.7352 34 1 3.2821 2.8607 -4.3297 35 1 3.8720 3.9677 -6.4486 36 1 4.3905 6.3746 -6.4774 37 1 4.3111 7.6763 -4.3887 38 1 3.7124 6.5711 -2.2713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177620892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -71.239275 kcal Electronic energy + Delta-G solvation = -22711.875350 eV Core-core repulsion = 19328.023269 eV Total energy + Delta-G solvation = -3383.852081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.38263 -38.62663 -36.77124 -35.18171 -34.14870 -31.68890 -30.93473 -30.66051 -28.35829 -26.98605 -25.85023 -23.88661 -22.39039 -21.61373 -20.44261 -19.52512 -17.34306 -16.85729 -16.02463 -15.66235 -15.30648 -15.06268 -14.95506 -14.70381 -14.51352 -13.76263 -13.54762 -13.44602 -13.22515 -12.71745 -12.49139 -12.14655 -12.01055 -11.47271 -11.25768 -11.04803 -10.94032 -10.84032 -10.74228 -10.49138 -10.21620 -10.11628 -10.09148 -9.59373 -9.25346 -8.89073 -8.77376 -8.47964 -8.42947 -7.02519 -5.82746 -3.26379 1.52256 1.54811 3.36716 3.42953 3.45135 3.94137 4.18616 4.26958 4.52239 4.95056 5.01900 5.09387 5.16185 5.24446 5.41798 5.53744 5.66779 5.73304 5.85736 5.95060 6.02726 6.06605 6.14450 6.16266 6.23803 6.45243 6.48117 6.53591 6.62648 6.63778 6.91259 7.00115 7.16441 7.42544 7.62762 8.04551 8.24923 8.34553 9.06450 9.65039 9.81255 10.11235 11.18449 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.006268 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.974311 B = 4466.370836 C = 5561.100457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.387 6.387 3 C 0.464 3.536 4 O -0.491 6.491 5 C 0.192 3.808 6 N -0.566 5.566 7 C -0.239 4.239 8 H 0.080 0.920 9 C 0.004 3.996 10 N -0.914 5.914 11 Si 0.916 3.084 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.126 3.874 16 C 0.122 3.878 17 H 0.105 0.895 18 O -0.522 6.522 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.133 0.867 30 H 0.257 0.743 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.346 0.654 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 1.678 -12.007 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.305 6.305 3 C 0.303 3.697 4 O -0.374 6.374 5 C 0.064 3.936 6 N -0.285 5.285 7 C -0.367 4.367 8 H 0.097 0.903 9 C -0.192 4.192 10 N -0.563 5.563 11 Si 0.746 3.254 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C -0.002 4.002 16 C 0.060 3.940 17 H 0.123 0.877 18 O -0.324 6.324 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.150 0.850 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.190 0.810 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.441 2.302 -11.395 11.714 hybrid contribution -0.347 0.458 0.467 0.741 sum 1.094 2.761 -10.928 11.324 Atomic orbital electron populations 1.22746 0.80579 1.00696 1.00901 1.86535 1.20287 1.37382 1.86329 1.25125 0.93227 0.80120 0.71221 1.90489 1.66220 1.36035 1.44696 1.20609 0.85954 0.85672 1.01395 1.43930 1.74966 1.07788 1.01798 1.19344 1.28389 1.02904 0.86078 0.90254 1.24831 0.98675 0.96750 0.98923 1.69719 1.44105 1.13792 1.28639 0.86070 0.77949 0.79423 0.81942 1.21505 1.21710 1.20589 1.21631 0.94265 0.96140 0.88184 1.21759 0.92089 0.90007 0.90142 0.87745 1.86981 1.40560 1.37103 1.67749 1.21085 0.97463 0.94459 0.96980 1.20891 1.00498 0.99757 0.92376 1.21061 1.00046 0.94941 0.97710 1.21049 1.01822 0.94504 0.97946 1.21104 1.00247 0.99589 0.92854 1.21051 0.99766 0.94352 0.98114 0.93533 0.93736 0.90673 0.94747 0.84960 0.93210 0.92144 0.93668 0.80960 0.86447 0.86492 0.86642 0.86455 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 10.56 101.05 1.07 1.94 16 2 O -0.39 -8.77 10.57 -39.26 -0.41 -9.18 16 3 C 0.46 11.44 4.82 36.01 0.17 11.62 16 4 O -0.49 -13.50 13.00 -26.55 -0.34 -13.85 16 5 C 0.19 4.50 5.44 -5.19 -0.03 4.48 16 6 N -0.57 -13.42 2.04 -174.60 -0.36 -13.77 16 7 C -0.24 -6.27 9.57 -15.06 -0.14 -6.42 16 8 H 0.08 2.02 7.82 -52.48 -0.41 1.61 16 9 C 0.00 0.11 5.19 -17.43 -0.09 0.02 16 10 N -0.91 -25.46 8.02 55.49 0.45 -25.01 16 11 Si 0.92 22.04 29.56 -169.99 -5.03 17.01 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.13 2.43 5.38 -4.03 -0.02 2.41 16 16 C 0.12 2.31 3.37 -27.88 -0.09 2.21 16 17 H 0.10 2.29 8.05 -51.93 -0.42 1.87 16 18 O -0.52 -10.54 8.95 -58.77 -0.53 -11.07 16 19 C -0.10 -1.55 5.00 -104.63 -0.52 -2.08 16 20 C -0.12 -1.63 9.33 -39.58 -0.37 -2.00 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 22 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 24 C -0.11 -1.67 9.68 -39.58 -0.38 -2.06 16 25 H 0.05 0.95 8.13 -51.92 -0.42 0.52 16 26 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.70 7.82 -51.93 -0.41 0.29 16 29 H 0.13 3.41 6.06 -51.93 -0.31 3.09 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 32 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 33 H 0.35 5.79 7.40 45.56 0.34 6.13 16 34 H 0.12 1.47 6.62 -52.49 -0.35 1.12 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -31.65 316.52 -7.54 -39.19 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.48 Total: 7.55 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.61 Total: 4.36 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.09 Total: -38.79 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.29 Total: -34.10 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.65 -7.54 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.048 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds