Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00109 * 2 1 4 4 O 1.20826 * 119.99691 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00144 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47024 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99981 * 82.95492 * 6 5 3 8 8 H 1.08005 * 119.99544 * 166.31524 * 7 6 5 9 9 C 1.38808 * 120.00299 * 346.32236 * 7 6 5 10 10 N 1.31620 * 120.00091 * 8.36436 * 9 7 6 11 11 Si 1.86798 * 120.00294 * 188.36989 * 9 7 6 12 12 H 1.48497 * 109.47490 * 89.99521 * 11 9 7 13 13 H 1.48500 * 109.47287 * 209.99890 * 11 9 7 14 14 H 1.48511 * 109.46955 * 329.99675 * 11 9 7 15 15 C 1.46505 * 119.99881 * 262.95291 * 6 5 3 16 16 C 1.53008 * 109.46727 * 90.00357 * 15 6 5 17 17 H 1.08998 * 109.47382 * 60.00013 * 16 15 6 18 18 O 1.42898 * 109.46837 * 299.99924 * 16 15 6 19 19 C 1.50700 * 109.46679 * 180.02562 * 16 15 6 20 20 C 1.38233 * 120.00016 * 84.72604 * 19 16 15 21 21 C 1.38236 * 119.99666 * 179.78301 * 20 19 16 22 22 C 1.38232 * 120.00185 * 0.44775 * 21 20 19 23 23 C 1.38241 * 119.99868 * 359.80495 * 22 21 20 24 24 C 1.38231 * 119.99906 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47246 * 300.00338 * 1 2 3 26 26 H 1.08998 * 109.47132 * 60.00066 * 1 2 3 27 27 H 1.09007 * 109.47435 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46874 * 59.99357 * 5 3 2 29 29 H 1.09005 * 109.46613 * 299.99532 * 5 3 2 30 30 H 0.97001 * 120.00469 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.46991 * 209.99713 * 15 6 5 32 32 H 1.08997 * 109.47300 * 330.00786 * 15 6 5 33 33 H 0.96703 * 114.00522 * 299.99824 * 18 16 15 34 34 H 1.07993 * 120.00513 * 359.97438 * 20 19 16 35 35 H 1.08000 * 120.00249 * 180.27127 * 21 20 19 36 36 H 1.08000 * 120.00328 * 179.83609 * 22 21 20 37 37 H 1.08000 * 119.99907 * 180.02562 * 23 22 21 38 38 H 1.08003 * 120.00014 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.0368 3.3778 1.1757 8 1 4.5455 4.3297 1.2155 9 6 3.4389 2.8621 2.3173 10 7 2.9640 1.6346 2.3143 11 14 3.3081 3.9102 3.8580 12 1 2.0321 4.6693 3.8335 13 1 3.3402 3.0343 5.0568 14 1 4.4484 4.8603 3.9086 15 6 4.3382 3.3377 -1.2606 16 6 3.0892 3.9727 -1.8755 17 1 2.6782 4.7088 -1.1846 18 8 2.1141 2.9588 -2.1270 19 6 3.4558 4.6490 -3.1714 20 6 3.5055 3.9172 -4.3430 21 6 3.8374 4.5385 -5.5324 22 6 4.1286 5.8897 -5.5486 23 6 4.0840 6.6205 -4.3760 24 6 3.7476 6.0001 -3.1874 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9557 0.7808 -0.8908 29 1 3.9564 0.7806 0.8893 30 1 2.5459 1.2742 3.1119 31 1 5.0819 4.1110 -1.0687 32 1 4.7492 2.6017 -1.9515 33 1 2.4122 2.2686 -2.7352 34 1 3.2821 2.8607 -4.3297 35 1 3.8720 3.9677 -6.4486 36 1 4.3905 6.3746 -6.4774 37 1 4.3111 7.6763 -4.3887 38 1 3.7124 6.5711 -2.2713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177620892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -89.879324 kcal Electronic energy + Delta-G solvation = -22712.683643 eV Core-core repulsion = 19328.023269 eV Total energy + Delta-G solvation = -3384.660375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.73445 -40.28478 -38.28272 -36.88772 -36.05339 -33.38996 -32.37132 -31.67947 -30.03714 -28.59504 -27.60801 -25.44745 -23.44572 -23.17342 -21.76469 -21.38544 -18.97046 -18.36019 -17.86525 -17.24943 -16.82579 -16.66021 -16.43672 -16.35365 -15.90452 -15.41763 -15.08604 -14.78144 -14.45123 -14.12598 -13.87590 -13.80046 -13.56172 -13.11233 -12.93872 -12.62396 -12.52213 -12.49494 -12.14792 -12.05160 -11.98415 -11.91260 -11.78841 -11.28342 -11.04617 -10.67239 -10.42155 -9.77934 -9.64116 -8.89567 -7.85344 -5.28379 0.47761 0.54217 1.41755 1.47351 1.51916 2.33077 2.42664 2.64359 2.90486 3.33838 3.52315 3.76141 4.02307 4.02534 4.19077 4.32790 4.35037 4.46659 4.51254 4.53577 4.64218 4.67582 4.72631 4.76045 4.93613 5.04495 5.12495 5.16752 5.25217 5.49189 5.57869 5.61756 5.64896 5.79289 6.16152 6.19069 6.30797 6.97549 7.07390 7.71458 7.93713 8.15563 9.12529 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.006268 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.974311 B = 4466.370836 C = 5561.100457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.393 6.393 3 C 0.468 3.532 4 O -0.526 6.526 5 C 0.192 3.808 6 N -0.580 5.580 7 C -0.240 4.240 8 H 0.081 0.919 9 C -0.048 4.048 10 N -0.932 5.932 11 Si 0.966 3.034 12 H -0.305 1.305 13 H -0.292 1.292 14 H -0.264 1.264 15 C 0.127 3.873 16 C 0.138 3.862 17 H 0.061 0.939 18 O -0.543 6.543 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.133 4.133 25 H 0.025 0.975 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.246 0.754 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.360 0.640 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 1.873 -14.523 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.311 6.311 3 C 0.309 3.691 4 O -0.412 6.412 5 C 0.064 3.936 6 N -0.299 5.299 7 C -0.369 4.369 8 H 0.099 0.901 9 C -0.241 4.241 10 N -0.582 5.582 11 Si 0.796 3.204 12 H -0.234 1.234 13 H -0.219 1.219 14 H -0.189 1.189 15 C 0.000 4.000 16 C 0.076 3.924 17 H 0.080 0.920 18 O -0.348 6.348 19 C -0.119 4.119 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.206 0.794 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.243 2.497 -13.946 14.344 hybrid contribution -0.600 0.411 1.097 1.317 sum 1.642 2.908 -12.848 13.275 Atomic orbital electron populations 1.22995 0.78490 1.03422 1.00068 1.86494 1.22339 1.36327 1.85904 1.25304 0.93682 0.80025 0.70078 1.90471 1.67080 1.37232 1.46397 1.20531 0.85448 0.85817 1.01832 1.44052 1.75093 1.08138 1.02602 1.19617 1.27370 1.02724 0.87196 0.90102 1.25440 0.99574 0.97765 1.01311 1.69905 1.45274 1.14658 1.28349 0.85267 0.77376 0.78286 0.79503 1.23362 1.21871 1.18854 1.21745 0.94535 0.96687 0.86983 1.21281 0.90802 0.89074 0.91229 0.92047 1.86934 1.41415 1.37936 1.68466 1.20762 0.99960 0.95105 0.96111 1.21076 1.00419 1.00379 0.92297 1.21435 0.98775 0.95471 0.98053 1.21497 0.99932 0.94446 0.98834 1.21401 0.99431 1.00912 0.92263 1.21164 1.00683 0.94177 0.99090 0.95573 0.93371 0.86157 0.91224 0.87328 0.94405 0.91944 0.91087 0.79377 0.85364 0.83543 0.83410 0.84089 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 10.56 113.37 1.20 2.86 16 2 O -0.39 -17.64 10.57 -51.41 -0.54 -18.18 16 3 C 0.47 23.27 4.82 71.24 0.34 23.61 16 4 O -0.53 -29.50 13.00 29.42 0.38 -29.12 16 5 C 0.19 9.01 5.44 85.64 0.47 9.48 16 6 N -0.58 -27.65 2.04 -706.32 -1.44 -29.09 16 7 C -0.24 -12.79 9.57 84.03 0.80 -11.99 16 8 H 0.08 4.17 7.82 -2.91 -0.02 4.15 16 9 C -0.05 -2.66 5.19 84.86 0.44 -2.21 16 10 N -0.93 -53.19 8.02 21.65 0.17 -53.02 16 11 Si 0.97 46.29 29.56 68.60 2.03 48.32 16 12 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 14 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.13 4.87 5.38 86.38 0.46 5.33 16 16 C 0.14 5.28 3.37 29.85 0.10 5.38 16 17 H 0.06 2.85 8.05 -2.39 -0.02 2.83 16 18 O -0.54 -22.02 8.95 -126.47 -1.13 -23.16 16 19 C -0.12 -3.65 5.00 -19.87 -0.10 -3.75 16 20 C -0.12 -3.16 9.33 22.27 0.21 -2.96 16 21 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 22 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 23 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 24 C -0.13 -3.79 9.68 22.27 0.22 -3.57 16 25 H 0.03 1.06 8.13 -2.38 -0.02 1.04 16 26 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 27 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 28 H 0.07 2.72 7.82 -2.39 -0.02 2.70 16 29 H 0.11 5.68 6.06 -2.38 -0.01 5.67 16 30 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 32 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 33 H 0.36 11.76 7.40 -74.05 -0.55 11.21 16 34 H 0.13 2.90 6.62 -2.91 -0.02 2.88 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -69.73 316.52 4.80 -64.93 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.52 Total: 24.26 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 4.81 Total: 15.05 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.26 Total: -82.10 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -1.29 Total: -70.46 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -69.73 4.80 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.946 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds